mRNA_Ecto-sp6_S_contig102.840.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: D7FZ75_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ75_ECTSI) HSP 1 Score: 342 bits (876), Expect = 1.890e-118 Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 1 Query: 1 MSSIQQLLHVLQARPGVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVSRLVAPGVCGRRSDIRRAREVRRWSWW-RLWV 546
MSSIQQLLHVLQARPGVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVSRLVAPGVCGRRSDIRRAREVRRW RLW+
Sbjct: 1 MSSIQQLLHVLQARPGVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVSRLVAPGVCGRRSDIRRAREVRRWXXXXRLWL 183
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: A0A835Z9G4_9STRA (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G4_9STRA) HSP 1 Score: 148 bits (374), Expect = 2.300e-42 Identity = 78/165 (47.27%), Postives = 111/165 (67.27%), Query Frame = 1 Query: 19 LLHVLQ---ARPGVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVSRLVAPGVCGRRSDIRR 504
+LH+L+ A V QQ+ L EL TSLTMASG+ R+G ++ +L+ LL+ ++EV L A RALI IDI P AA ++ A G + +C LL++ D+D+AE CL+CL L++ + PRAV+ AGG +AC+AFFDFFP +L++ AL V+ L A G GR D+ R
Sbjct: 1 MLHLLEGLGAGADVHQQVTALTELTTSLTMASGYMGNVRLGPIMPSLLALLASPSSEVALQATRALIAAIDIAPHAAAAVAADGGLDVLCGHLLRMADIDLAEQCLRCLRLVAAEAPRAVVAAGGLRACMAFFDFFPRDLRRLALSVVAALCASGALGRAEDLPR 165
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: A0A6A1WG88_9ROSI (HECT-type E3 ubiquitin transferase n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WG88_9ROSI) HSP 1 Score: 87.8 bits (216), Expect = 7.830e-17 Identity = 52/147 (35.37%), Postives = 84/147 (57.14%), Query Frame = 1 Query: 19 LLHVLQARPGVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSG--ANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTV 453
+L L G +Q+A L EL L+ + + V + L+ L+ +N +++LLAIRA+ D+ PR++ L+ AV +C+RL+ ++ +DVAE CL+ L +S++ PRA L+AG A L + DFF +Q+ AL TV
Sbjct: 112 ILSSLSEVTGPSEQLAALTELCEVLSFCTEDSFSSMVADSLSPLLVNLAKHESNPDIMLLAIRAITYICDVYPRSSNFLIRHDAVAALCQRLMAVEYLDVAEQCLQALEKISREQPRACLQAGAIMAVLNYIDFFSTSVQRVALSTV 258
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: A0A8J5KUA3_ZINOF (HECT domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KUA3_ZINOF) HSP 1 Score: 79.7 bits (195), Expect = 5.020e-14 Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 139 IQTLVPLL-----SGANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVSRL 462
++ LVP L +G N E++LLAIRAL +D P +A ++ G + +C +LL I+ +DVAE C + L +S+ P A L+AG A L + DFFP +Q+ A+ TV+ +
Sbjct: 112 LEELVPSLLKLNANGRNPEIMLLAIRALTYLLDARPSSAAAIARHGGITVLCGKLLAIEYLDVAEKCHQALEKISRGYPVACLKAGAVNAVLTYIDFFPSNIQRVAVITVTNM 224
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: A0A3N4L5S2_9PEZI (HECT-type E3 ubiquitin transferase n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4L5S2_9PEZI) HSP 1 Score: 76.6 bits (187), Expect = 5.890e-13 Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 1 Query: 4 SSIQQLLHVLQARPGVDQQIAVLHELNTSLTMA-----SGHPSQNRVGGVIQTLVPLLS-----GANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVS 456
S ++ +L L+ + Q+ L EL L ++ SGH S ++ ++ LV L+ G N +++LLA R + ++ P A ++V GAV +C++L++IQ +D+AE L L +S + P +++ GG ACL + DFF +Q+ A+ T +
Sbjct: 91 SRLRDILANLRQKDDPSTQLIALQELAEILLVSTEDNLSGHFSPDQF---VKELVSLMEDQGPFGENPDMMLLACRCIANLMEALPAATANVVYGGAVPVLCRKLMEIQYIDLAEQALSTLEKISVEYPTSIVREGGLVACLTYLDFFATNVQRTAVTTAA 248
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: D5GFJ7_TUBMM (HECT-type E3 ubiquitin transferase n=5 Tax=Tuberaceae TaxID=40289 RepID=D5GFJ7_TUBMM) HSP 1 Score: 76.6 bits (187), Expect = 5.940e-13 Identity = 50/161 (31.06%), Postives = 86/161 (53.42%), Query Frame = 1 Query: 4 SSIQQLLHVLQARPGVDQQIAVLHELNTSLTMA-----SGHPSQNRVGGVIQTLVPLLS-----GANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVS 456
S ++ L L+ + Q+ L EL L ++ SGH S ++ ++ LV L+ G N E++LLA R + ++ P A ++V GAV +C++L++IQ +D+AE L L +S + P +++ GG ACL + DFF +Q+ A+ T +
Sbjct: 260 SRLRDNLASLRQKDDPSTQLIALQELAEILLVSTEDNLSGHFSPDQF---VKELVSLMEDQGPFGENPEMMLLACRCIANLMEALPAATANVVYGGAVPVLCRKLMEIQYIDLAEQALSTLEKISVEYPTSIVREGGLTACLTYLDFFATNVQRTAVTTAA 417
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: UPI0020080523 (HECT-domain-containing protein n=1 Tax=Xylaria bambusicola TaxID=326684 RepID=UPI0020080523) HSP 1 Score: 75.9 bits (185), Expect = 1.100e-12 Identity = 51/162 (31.48%), Postives = 90/162 (55.56%), Query Frame = 1 Query: 4 SSIQQLLHVLQARPGVDQQIAVLHELNTSLTMA-----SGHPSQNRVGGVIQTLVPLL-----SGANN-EVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVS 456
S ++ +L+ L+ + Q+ L EL+ L ++ SGH S + ++ LV L+ +G + E++LLA R L ++ P +A ++V GAV +C++LL+IQ +D+AE L L +S + P +++ GG ACL++ DFF Q+ A+ T +
Sbjct: 269 SRLRDILNNLRQKGDPSVQLIALQELSEILLVSNEDNLSGHFSPD---AFVKELVILMQPNEFTGEESPEIMLLACRCLANLMEALPASAANVVYGGAVPVLCRKLLEIQFIDLAEQALSTLEKISVEYPTSIVREGGLSACLSYLDFFATSTQRTAVTTAA 427
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: A0A553I2C4_9PEZI (HECT-type E3 ubiquitin transferase n=1 Tax=Xylaria flabelliformis TaxID=2512241 RepID=A0A553I2C4_9PEZI) HSP 1 Score: 75.1 bits (183), Expect = 2.030e-12 Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 4 SSIQQLLHVLQARPGVDQQIAVLHELNTSLTMA-----SGHPSQNRVGGVIQTLVPLL-----SGANN-EVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVS 456
S ++ +L L+ + Q+ L EL+ L ++ SGH S + ++ LV L+ +G + E++LLA R L ++ P +A ++V GAV +C++LL+IQ +D+AE L L +S + P +++ GG ACL++ DFF Q+ A+ T +
Sbjct: 289 SRLRDILSNLRQKGDPSVQLIALQELSELLLVSNEDNLSGHFSPD---AFVKELVVLMQPNEFTGEESPEIMLLACRCLANLMEALPASAANVVYGGAVPVLCRKLLEIQFIDLAEQALSTLEKISVEYPTSIVREGGLTACLSYLDFFATSTQRTAVTTAA 447
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: A0A1V1TSV9_9FUNG (HECT-type E3 ubiquitin transferase n=3 Tax=Fungi TaxID=4751 RepID=A0A1V1TSV9_9FUNG) HSP 1 Score: 74.7 bits (182), Expect = 2.760e-12 Identity = 50/160 (31.25%), Postives = 89/160 (55.62%), Query Frame = 1 Query: 10 IQQLLHVLQARPGVDQQIAVLHELNTSLTMA-----SGHPSQNRVGGVIQTLVPLL-----SGANN-EVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVS 456
++ +L+ L+ + Q+ L EL+ L ++ SGH S + ++ LV L+ +G + E++LLA R L ++ P +A ++V GAV +C++LL+IQ +D+AE L L +S + P +++ GG ACL++ DFF Q+ A+ T +
Sbjct: 264 LRDILNNLRQKGDSSVQLIALQELSEILLVSNEDNLSGHFSPD---AFVKELVVLMQPNEFTGEESPEIMLLACRCLANLMEALPASAANVVYGGAVPVLCRKLLEIQFIDLAEQALSTLEKISVEYPTSIVREGGLTACLSYLDFFATSTQRTAVTTAA 420
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Match: A0A0J8TNX1_COCIT (HECT-type E3 ubiquitin transferase n=1 Tax=Coccidioides immitis RMSCC 3703 TaxID=454286 RepID=A0A0J8TNX1_COCIT) HSP 1 Score: 73.6 bits (179), Expect = 6.770e-12 Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 58 QIAVLHELNTSL------TMASGHPSQNRVGGVIQTLVPLLSGANN-EVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVS 456
Q+ L EL+ L T++ + + V ++ + P +G N E++LLA R L ++ + ++V GAV +C++LL IQ +D+AE L L +S D P +++ GG ACL + DFFP Q+ A+ T +
Sbjct: 290 QLIALQELSDLLLVSNEDTLSGQFAADSYVKELVTLMEPSETGEENPEIMLLACRCLANLMEAIRGSVANVVYGGAVPVLCRKLLDIQFIDLAEQALSTLAKISVDFPASIVREGGLTACLTYLDFFPTSTQRTAVTTAA 429 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.840.1 >prot_Ecto-sp6_S_contig102.840.1 ID=prot_Ecto-sp6_S_contig102.840.1|Name=mRNA_Ecto-sp6_S_contig102.840.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=184bp MSSIQQLLHVLQARPGVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLback to top mRNA from alignment at Ecto-sp6_S_contig102:163039..166728+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.840.1 ID=mRNA_Ecto-sp6_S_contig102.840.1|Name=mRNA_Ecto-sp6_S_contig102.840.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3690bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:163039..166728+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:163039..166728+ >mRNA_Ecto-sp6_S_contig102.840.1 ID=mRNA_Ecto-sp6_S_contig102.840.1|Name=mRNA_Ecto-sp6_S_contig102.840.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:163039..166728+ (Ectocarpus species6 EcLAC_371)back to top |