mRNA_Ecto-sp6_S_contig101.818.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.818.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 1524 bits (3947), Expect = 0.000e+0 Identity = 925/1007 (91.86%), Postives = 939/1007 (93.25%), Query Frame = 1 Query: 49 ARKDFKIYMNKLLEHSTALDTFRPDKRHSDVGDTGSGVPAWGPSLGMSEEGGSVGKERGSPPAGAAVDVTMPPFSPSRFREEKHAWPRAGAVTPPRPRPPPNFSWMAGPGSPASRRRGXXXAGRVSGGGARKSISSADFASSPAPAAGGPRIEGGRLSADLGMDDGGRSWGAEEEEGEKDADAWKAQWSRRLSRGQIHSEYQDRFPWPPRSAFLGTVDDDAFSGAPPPPHPRGRRASARGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYPRDGGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRTGTGRLPGGDLEMAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SEQTSGLEVIGHRTSRASSVYDEKEWEAGRGSEADSGWPSGAADVGGSSXXXXXXXXXXXGDVAAAEVWRGEAVGRGEVTTMSGGRTLDFSSQQSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVMSLGLRWRRWSDIRTHLLGNKPELQGFLKRFDKDRAGLASAALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAMKEGKELDVDTMPMFQEPATSRSRAKLARRRQSSGCRAHGTVPGTVPPDGARKGREGRRPGAGEGGSGTQPRRSGTAVAPGATAATMSPSEQKHDEDHHHGRGGTRKDRRPSRAAATRGDDSTCPPGSTPTGGDTEGGSRGEGFRYFGEGGRGGDRGKVDVDGDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVGGGKENVRKAPHKHAXXXXXXXXXXXXSSSGVPASPPRRKVRSTGDAARRAGTETLGFEETLAPKGGRRGSVRRGLSRGDTQASHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILANARWPPPVDVPSQERTEQRSAYSLEHSFLAYD 3060
ARKDFKIYM+KLLEHSTALDTFRPDKRHSD GDTGSGVPAWGPSLGMSEEGGSVG+ RGSPPAGAAVDVTMPPFSPSRFREEKHAWPRAGAVTPPRPRPPPNFSWMA PGSPASR XXX ARKS+SSAD ASSPAPAAGGPRI+GGRLSADLGMDDGGRSWGAEEEEGE+DADAWKAQWSRRLSRG IHSEYQDRFPWPPRSAFLGTVDDDAF+GAPPPPHPRGRRASARGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYPRDGGGVG XXXXXXXXXXXX RR GTGRLPGGDLEMAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SEQTSGLEVIGHRTSRASSVYDEKEWEAGRGSEAD GWPS AADVGGSS GDVAAAEVWRGEAVGRGEVTTMSGGRTLDFSSQ SILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLV++LGLRWRRWSDIRTHLLGNKPELQGFLKRF+KDRAGLAS ALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLA+KEGKELDVDTMPMFQEPATSRSRAKLARRRQSSGCRAHGTVPGTVPPDGA KGREGRRPGAGEGGSGTQPR+SGTA A GATAATM SEQKHD+ HHHGRGGTRK RRPSRAAATRGDDSTCPPGSTPTGGDTEGGSRGEGFRYFGEGGRGGD GKVDVDGDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVGGGK NVRKAPHKHA XXXXXXXXXXX GVPASPPRR+VRSTGDAARRAGT TLGFEETLAPKGGRRGSVRRGLSRGDTQASHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILAN RWPPPVDVP+QERTEQRSAYSLEHSFLAYD
Sbjct: 3 ARKDFKIYMDKLLEHSTALDTFRPDKRHSDAGDTGSGVPAWGPSLGMSEEGGSVGEARGSPPAGAAVDVTMPPFSPSRFREEKHAWPRAGAVTPPRPRPPPNFSWMAEPGSPASRXXXXXXXXXXXXXXARKSLSSADLASSPAPAAGGPRIKGGRLSADLGMDDGGRSWGAEEEEGEEDADAWKAQWSRRLSRGPIHSEYQDRFPWPPRSAFLGTVDDDAFNGAPPPPHPRGRRASARGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYPRDGGGVGGXXXXXXXXXXXXVDTAAAGRGGEGSPSDGRRAGTGRLPGGDLEMAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSEQTSGLEVIGHRTSRASSVYDEKEWEAGRGSEADGGWPSRAADVGGSSMAGGATLIGSAGDVAAAEVWRGEAVGRGEVTTMSGGRTLDFSSQ-SILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVIALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAVKEGKELDVDTMPMFQEPATSRSRAKLARRRQSSGCRAHGTVPGTVPPDGASKGREGRRPGAGEGGSGTQPRKSGTAAAAGATAATMGLSEQKHDQGHHHGRGGTRKTRRPSRAAATRGDDSTCPPGSTPTGGDTEGGSRGEGFRYFGEGGRGGDGGKVDVDGDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVGGGKGNVRKAPHKHAGXXXXXXXXXXXXXXGVPASPPRRRVRSTGDAARRAGTGTLGFEETLAPKGGRRGSVRRGLSRGDTQASHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILANTRWPPPVDVPAQERTEQRSAYSLEHSFLAYD 1008
BLAST of mRNA_Ecto-sp6_S_contig101.818.1 vs. uniprot
Match: A0A6H5JPQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ9_9PHAE) HSP 1 Score: 150 bits (378), Expect = 4.470e-39 Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 1 Query: 2800 KGGRRGSVRRGLSRGDTQASHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILANARWPPPVDVPSQERTEQRSAYSLEHSFLAYD 3060
K G R + R GLSRG TQ SHACIYRHK KGRTPSRVANPKARRPVQAAHDPILAN RWPPPVDVP+QERTEQRSAYSLEHS LAYD
Sbjct: 5 KEGPRRAARGGLSRGGTQVSHACIYRHKLKGRTPSRVANPKARRPVQAAHDPILANIRWPPPVDVPAQERTEQRSAYSLEHSSLAYD 91 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.818.1 >prot_Ecto-sp6_S_contig101.818.1 ID=prot_Ecto-sp6_S_contig101.818.1|Name=mRNA_Ecto-sp6_S_contig101.818.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1021bp MLSGRAGCSQPHAIEQARKDFKIYMNKLLEHSTALDTFRPDKRHSDVGDTback to top mRNA from alignment at Ecto-sp6_S_contig101:524274..534674+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.818.1 ID=mRNA_Ecto-sp6_S_contig101.818.1|Name=mRNA_Ecto-sp6_S_contig101.818.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10401bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:524274..534674+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:524274..534674+ >mRNA_Ecto-sp6_S_contig101.818.1 ID=mRNA_Ecto-sp6_S_contig101.818.1|Name=mRNA_Ecto-sp6_S_contig101.818.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3063bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:524274..534674+ (Ectocarpus species6 EcLAC_371)back to top |