mRNA_Ecto-sp6_S_contig101.807.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: D7FPP0_ECTSI (Cryptochrome 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP0_ECTSI) HSP 1 Score: 939 bits (2428), Expect = 0.000e+0 Identity = 478/501 (95.41%), Postives = 481/501 (96.01%), Query Frame = 3 Query: 3 ESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAYDAHQEAQAAESHDDGGSXXXXXXXXXXXXXXARSRARGAQPASSKRVKR 1505 ESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIP+FDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQ YFRCYSPIAFGKKTD+NGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKM+DAYDAHQEAQAAESHDDGGSXXXXXXXXXXXXXXARSRARGAQPASSKRVKR Sbjct: 62 ESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPSFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQ--------------------YFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMNDAYDAHQEAQAAESHDDGGSXXXXXXXXXXXXXXARSRARGAQPASSKRVKR 542
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: A0A835Z8B1_9STRA (DNA photolyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B1_9STRA) HSP 1 Score: 515 bits (1326), Expect = 1.060e-174 Identity = 259/468 (55.34%), Postives = 320/468 (68.38%), Query Frame = 3 Query: 3 ESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDL-PAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVY-TKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAYDAHQEAQAAESHDD 1400 E+L DLD QL+ GSRL+VV+G P E P+LF EW+V LTFE D+EP ++ RD+EV +A+ GV V + TL NL Y G K+YG FLKL D+ G VP C ++ D+ P G++ E+ ++PSL PLA L + GGE ALAR++ +AR+ WI+KFEKPKTSPNS+EPSTTVLS Y+ GCLS+R F+H L ++Y G +KPPVSL GQLLW+EF Y G+++P+FD+M GNP+ RQ+PWD + + L AW+E+RTG+P+IDA MTQL+ EGWIHHLARHAVACFLTRGDLWQSWE GA VFD+ LLDADWS+N NW WLSCS+FFYQ YFRCYSP+AFGKKTD G YI+KYLP L+ +P KYIYEPW AP VQ GC++G DYPKPIVDH SK NM +M AY AQAA S DD Sbjct: 56 ETLSDLDTQLKGIGSRLYVVQGNPAERFPELFREWSVSLLTFETDTEPYAKKRDQEVCKIAETCGVTVAQHASHTLHNLDRYEAKAGASP--LPKSYGPFLKLFDSLGAVPQCVETVTVDIMPQDGSAVPAGEH---TVPSLDTTPYPPLANPLLYPGGETAALARMQLHLARKQWIAKFEKPKTSPNSLEPSTTVLSPYLKFGCLSSRLFYHKLAEIYKASPGHAKPPVSLHGQLLWREFFYMCGHTVPHFDRMEGNPICRQVPWDSNAQLLAAWEESRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWQSWEAGAVVFDKYLLDADWSVNTANWMWLSCSSFFYQ--------------------YFRCYSPVAFGKKTDPTGAYIRKYLPQLKNYPDKYIYEPWLAPKAVQEKAGCVVGCDYPKPIVDHKQVSKDNMDRMKAAY----AAQAAGSDDD 494
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: A0A3B1IHH9_ASTMX (Cryptochrome-1-like n=6 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IHH9_ASTMX) HSP 1 Score: 490 bits (1262), Expect = 4.150e-165 Identity = 248/454 (54.63%), Postives = 308/454 (67.84%), Query Frame = 3 Query: 3 ESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKA-LKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAY 1358 E+L+DLD LR SRLFV+RG P EV P+LFEEW V +LTFE DSEP S+ RD+EV LAK+ GV+++ + + TL NL+ GK TY++ K+ PVP AP D+ + + + + +P+L +LG + + + GGE+EAL RL+ M R +W+ FEKP+TSPN+++PSTTVLS Y+ GCLS R FW L +VY K S PPVSL GQLLW+EF Y + Y IPNF+KM GN + Q+ WD + E L AW+EARTGFP+IDA MTQL+ EGWIHHLARHAVACFLTRGDLW SWE+G VF+ELLLDADW++N NWQWLS SAFF+Q YFR YSPIAFGKKTDKNGDYIKKYLP L+KFP++YIYEPW AP +Q GCI+GKDYP+PIVDH SK N+ +M AY Sbjct: 57 EALKDLDSSLRKLNSRLFVIRGVPREVFPRLFEEWKVTRLTFEVDSEPYSQKRDKEVMDLAKQHGVEIITKISHTLYNLERVIEENNGKAPLTYVRFQTVLNKIGPPKRPVP--AP-TREDMKGVSTPSSETDKENYGVPTLDELGQDSTTLGPVLYPGGEQEALRRLDEYMQRTNWVCSFEKPQTSPNALKPSTTVLSPYVKFGCLSARTFWWRLAEVYHGKKHSAPPVSLHGQLLWREFFYTAAYGIPNFNKMEGNTICVQVDWDSNPEHLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWALNAGNWQWLSASAFFHQ--------------------YFRVYSPIAFGKKTDKNGDYIKKYLPILKKFPAQYIYEPWKAPKSIQEQAGCIVGKDYPRPIVDHDTISKKNIQRMKAAY 487
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: A0A668AA89_9TELE (Cryptochrome-1-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A668AA89_9TELE) HSP 1 Score: 486 bits (1251), Expect = 1.770e-163 Identity = 255/453 (56.29%), Postives = 306/453 (67.55%), Query Frame = 3 Query: 6 SLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKAL-KFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAY 1358 +L+DLD LR SRLFVVRGKPEEV P+LF +WNV KLT+E D+EP S + D++V +LAKE GV+V+ + + TL N+ GK TY + L PVP AP I D+ D ++ IP+L +LG + + + KF GGE+EAL RL+ M R WI FEKP+TSPNS+ PSTTVLS Y++ GCLS R FW L VY K S PPVSL GQLLW+EF Y + IPNF+KMVGNPV QI WD + E L AW+EARTGFP+IDA MTQL+ EGWIHHLARHAVACFLTRGDLW SWE+G VF+ELLLD DW++N NWQWLS SAFF+Q YFR YSPIAFGKKTDKNGDYIKKYLP L+KFP++YIYEPW AP VQ+ GCI+GKDYP P+V+H SK N+ +M AY Sbjct: 58 ALKDLDCSLRKLNSRLFVVRGKPEEVFPKLFNKWNVTKLTYEYDTEPYSLSTDKKVTTLAKEHGVEVIYKISHTLYNIDRIIEENNGKAPLTYNRLQSVVKTLGPPKRPVP--APTID-DMKGVKTPYTDKHEKKYGIPTLEELGYDTASLSEEKFPGGEQEALKRLDEHMKRTGWICSFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLTDVYQGKKHSDPPVSLHGQLLWREFFYTASVGIPNFNKMVGNPVCTQIDWDTNTEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSASAFFHQ--------------------YFRVYSPIAFGKKTDKNGDYIKKYLPLLKKFPAQYIYEPWKAPRSVQQAAGCIVGKDYPHPVVEHEVISKKNIQRMKIAY 487
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: UPI001955C6E5 (cryptochrome circadian regulator 5 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955C6E5) HSP 1 Score: 484 bits (1246), Expect = 9.740e-163 Identity = 248/454 (54.63%), Postives = 307/454 (67.62%), Query Frame = 3 Query: 3 ESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYD-RFSIPSLSDLGVEPLAKALK-FRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAY 1358 E+L+DLD L+ SRLFVV G P EVLP+LFE+W + +LTFE D+EP SR+RD EV LAKE GV+V+ + + TL N+ ++ + G TY F + GP P + + + ++P +++ +F IP+L DLG++ + F GGE+EAL RL+ M R W+ KFEKP+TSPN++ PSTTVLS Y+ GCLS R FW L VY K S+PPVSL GQLLW+EF Y + IPNFD+M GNP Q+ WD E L AW+EARTGFP+IDA MTQL+ EGWIHHLARHAVACFLTRGDLW SWE+G VF+ELLLDADWS+N NWQWLS SAFF+Q YFR YSP+AFGKKTDKNGDYIKKYLP L+KFP++YIYEPW AP +Q GCI+GKDYP+PIVDH K N+ +M AY Sbjct: 57 EALKDLDSSLKKLNSRLFVVSGPPTEVLPKLFEKWEITRLTFEVDTEPYSRSRDEEVMKLAKEYGVEVIPKISHTLYNIDR---IIDENNGKTPLTYVRFQSVLKAIGPPKKPVPAPTKEDMSGVSTPISEDHEEKFGIPTLEDLGLDASSLGPDLFPGGEQEALRRLDEHMQRPGWVCKFEKPQTSPNALTPSTTVLSPYVRSGCLSARTFWWRLSDVYRAKKHSEPPVSLHGQLLWREFFYTTAVGIPNFDRMEGNPHCVQVDWDNHPEHLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASAFFHQ--------------------YFRVYSPVAFGKKTDKNGDYIKKYLPLLKKFPAEYIYEPWKAPRSIQERAGCIVGKDYPRPIVDHEVVHKKNIQRMKAAY 487
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: A0A3Q8GXL8_ERISI (Cryptochrome-1 n=1 Tax=Eriocheir sinensis TaxID=95602 RepID=A0A3Q8GXL8_ERISI) HSP 1 Score: 481 bits (1238), Expect = 1.010e-161 Identity = 251/465 (53.98%), Postives = 313/465 (67.31%), Query Frame = 3 Query: 3 ESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDR-FSIPSLSDLGV-EPLAKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAYDAHQEAQAAES 1391 ++L DLD LR SRLFVVRG PEEV P+LF+ W+VK++T+E D+EP +R RD V LAKE GV+V R TL ++ ++ G TY + KL + G P ++ +LP P ++A + + PSL +LGV E + + GGE EALARLE+ M R+ W+ KFEKPKTSPNS++PSTTVLS Y+ GCLS R +H L +VY ++PPVSL GQLLW+EF Y G + PNFD+M GNPV RQIPW +DE+ + AW ARTG+P+IDA MTQL+ EGW+HHLARHAVACFLTRGDLWQ WEDG VF+ELLLDADWS+N NW WLS SAFF YFR YSPIAFGK TDK+GDYI+KYLP L K+P +IYEPW APL VQR GCIIG+DYP+PIVDH+ K N+ +M AY A +E +A+E+ Sbjct: 55 QTLADLDAGLRKLKSRLFVVRGSPEEVFPKLFKTWDVKRITWELDTEPYARTRDERVEKLAKECGVEVACRVGHTLYRVEK---IIDANLGKTPLTYQSLQKLANKLGHPPKPIGTLT-ELPEPCHLQEEAASNASYDPPSLKELGVKEEKLEPCFYPGGETEALARLEKYMERKSWVCKFEKPKTSPNSLQPSTTVLSPYLKFGCLSPRTMYHQLLQVYKGSSHTQPPVSLLGQLLWREFFYTVGATTPNFDRMEGNPVCRQIPWVRDEKLMDAWTHARTGYPFIDAIMTQLRKEGWVHHLARHAVACFLTRGDLWQPWEDGMKVFEELLLDADWSLNAGNWMWLSASAFF--------------------NSYFRVYSPIAFGKNTDKHGDYIRKYLPQLAKYPESFIYEPWKAPLGVQRAAGCIIGQDYPRPIVDHSVVMKRNLERMGQAYRAGKEKKASEA 495
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: H2MAP7_ORYLA (Cryptochrome-1 n=10 Tax=Oryzias TaxID=8089 RepID=H2MAP7_ORYLA) HSP 1 Score: 481 bits (1239), Expect = 1.230e-161 Identity = 252/455 (55.38%), Postives = 308/455 (67.69%), Query Frame = 3 Query: 6 SLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLP--APGASPDDAEYDRFSIPSLSDLGVEPLAKALK-FRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAY 1358 SLQDLD LR SRLFVVRGKPEEVLP+LF +WNV KLT+E D+EP SR+RD+ V LA+E +QV+ + + TL ++ GK TY + L P+P AP + D+ AP + EY IPSL +LG++ + A + F GGE+EAL RL+ M R W+ FEKP TSPNS+ PSTTVLS Y++ GCLS R FW L +VY K S PPVSL GQLLW+EF Y + IPNF+KM GNP Q+ WD+++E L AW+EARTGFP+IDA MTQL+ EGWIHHLARHAVACFLTRGDLW SWE+G VF++LLLD DW++N NWQWLS S FF+Q +FR YSP+AFGKKTDKNGDYIKKYLP L+KFP +YIYEPW AP VQ+ GCI+GKDYPKPI++H SK N+ +M AY Sbjct: 58 SLQDLDCSLRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTEPYSRSRDKNVTMLAEEQRIQVIYKISHTLYDIDRIIEENNGKPPLTYNRLRDIVKALGSPKKPIP--APTVE-DMKNIAPFSEKHKPEY---GIPSLEELGLDTSSLAEEIFPGGEQEALRRLDTYMQRPGWVCSFEKPNTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLAEVYQGKKHSDPPVSLHGQLLWREFFYTASVGIPNFNKMTGNPACTQVDWDENQEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEKLLLDGDWALNAGNWQWLSASTFFHQ--------------------FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPPQYIYEPWKAPRSVQQAAGCIVGKDYPKPIIEHEVISKKNIQRMKQAY 486
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: A0A3Q2CCJ5_CYPVA (Cryptochrome-1-like n=2 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2CCJ5_CYPVA) HSP 1 Score: 481 bits (1239), Expect = 1.230e-161 Identity = 246/453 (54.30%), Postives = 303/453 (66.89%), Query Frame = 3 Query: 6 SLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALK-FRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAY 1358 +L+DLD LR SRLFV+RGKPEEV P+LF +W V KLT+E D+EP S +RD +V SLAKE G+ V+ + + TL N++ GK TY + KL P+P D D+ P + D+ +Y IP+L + G++ + + F GGE+EAL RL+ M + W+ FEKP+TSPNS+ PSTTVLS Y++ GCLS R FW L +VY K S PPVSL GQLLW+EF Y IPNF+KM GN V Q+ WD +++ L AW+EARTGFP+IDA MTQL+ EGWIHHLARHAVACFLTRGDLW SWE+G VF+ELLLD DW++N NWQWLS SAFF+Q +FR YSPIAFGKKTDKNGDYIKKYLP L KFP +YIYEPW AP VQ+ GCI+GKDYP PIV H SK N+ +M +AY Sbjct: 57 ALKDLDSSLRKLNSRLFVLRGKPEEVFPKLFSKWKVTKLTYEYDTEPYSLSRDEKVTSLAKETGIDVIYKISHTLFNIERIIEENDGKPPLTYKRLQAIVAKLGPPKKPIPAPTLDDMKDVKTPCSEKDEKKY---GIPTLEEFGLDSTSLGEELFPGGEQEALRRLDEHMKKTGWVCSFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLTEVYRGKKHSDPPVSLHGQLLWREFFYTCSLGIPNFNKMKGNTVCTQVDWDTNQDYLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSASAFFHQ--------------------FFRVYSPIAFGKKTDKNGDYIKKYLPLLEKFPPQYIYEPWKAPRSVQQAAGCIVGKDYPHPIVQHEQVSKKNIQRMKEAY 486
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: H3BZL6_TETNG (Cryptochrome circadian regulator 5 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3BZL6_TETNG) HSP 1 Score: 481 bits (1238), Expect = 1.980e-161 Identity = 253/464 (54.53%), Postives = 309/464 (66.59%), Query Frame = 3 Query: 6 SLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPV--PDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLA-KALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAA-VFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAYDAHQEAQAA 1385 +L+DLD LR SRLFVVRGKPEEV P+LF +W V KLT+E D+EP S +RDR V +LA+E+GVQV+ R + TL + + ++ + G TY + + GP P AP + DL + ++ IP+L DLG +P KF GGE+EAL RLE M + W+ FEKP+TSPNS+ PSTTVLS Y++ GCLS R FW L VY+ K S PPVSL GQLLW+EF Y + IPNF+KM NPV Q+ WD D E L AW+EARTGFP+IDA MTQL+ EGWIHHLARHAVACFLTRGDLW SWE+G VF+ELLLD DW++N NWQWLS SAFF+Q +FR YSP+AFGKKTDKNGDYIKKYLP L+KFP++YIYEPW AP +Q+ GCIIGKDYP PIV H + SK N+ +M AY + AA Sbjct: 62 ALRDLDLSLRNLNSRLFVVRGKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAEESGVQVVYRVSHTLYDTER---VLEENNGKPPLTYNSMQAIVKKLGPPKRPISAPSMD-DLKGVSTPCLEDHEKKYGIPTLEDLGHDPAGLPEEKFPGGEQEALRRLEDQMKKTSWVCNFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLSDVYSGKKHSAPPVSLHGQLLWREFFYTASVGIPNFNKMADNPVCTQVDWDTDSEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKKVFEELLLDGDWALNAGNWQWLSASAFFHQ--------------------FFRVYSPVAFGKKTDKNGDYIKKYLPHLKKFPAQYIYEPWKAPQSIQKAAGCIIGKDYPHPIVKHEEVSKKNIQRMKLAYARRSTSNAA 501
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Match: Q9I911_DANRE (6-4 photolyase n=4 Tax=Danio rerio TaxID=7955 RepID=Q9I911_DANRE) HSP 1 Score: 481 bits (1237), Expect = 2.300e-161 Identity = 248/454 (54.63%), Postives = 303/454 (66.74%), Query Frame = 3 Query: 3 ESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALK-FRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFKPIPCTLACLDGGYFRCYSPIAFGKKTDKNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMHDAY 1358 E+L+DLD L+ SRLFVVRG P EVLP+LF++W + +LTFE D+EP S++RD+EV LAKE GV+V + + TL N+ GK TY++ + P+P AP + D+ D ++F IP+L DLG++ + F GGE+EAL RL+ M R +W+ KFEKPKTSPNS+ PSTTVLS Y+ GCLS R FW L VY K S PPVSL GQLLW+EF Y + IPNF+KM GN Q+ WD + E L AW+EARTGFP+ID MTQL+ EGWIHHLARHAVACFLTRGDLW SWE+G VF+ELLLD+DWS+N NWQWLS S FF+Q YFR YSPIAFGKKTDK+GDYIKKYLP L+KFP++YIYEPW AP VQ GCI+GKDYP+PIVDH K N+ +M AY Sbjct: 57 EALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIP--AP-TNEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWVCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARTFWWRLADVYRGKTHSDPPVSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDWDNNPEHLAAWREARTGFPFIDTIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSASTFFHQ--------------------YFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVDHEVVHKKNILRMKAAY 487 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.807.1 >prot_Ecto-sp6_S_contig101.807.1 ID=prot_Ecto-sp6_S_contig101.807.1|Name=mRNA_Ecto-sp6_S_contig101.807.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=419bp MLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYback to top mRNA from alignment at Ecto-sp6_S_contig101:385562..391354- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.807.1 ID=mRNA_Ecto-sp6_S_contig101.807.1|Name=mRNA_Ecto-sp6_S_contig101.807.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5793bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:385562..391354- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:385562..391354- >mRNA_Ecto-sp6_S_contig101.807.1 ID=mRNA_Ecto-sp6_S_contig101.807.1|Name=mRNA_Ecto-sp6_S_contig101.807.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:385562..391354- (Ectocarpus species6 EcLAC_371)back to top |