mRNA_Ecto-sp6_S_contig101.800.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI) HSP 1 Score: 370 bits (951), Expect = 9.690e-122 Identity = 389/440 (88.41%), Postives = 390/440 (88.64%), Query Frame = 1 Query: 1 MPRSSRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDETIVDNRGRTAYQRLPVIDNVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCRARPDKVRLKTAKILDPTAAGNQPQQRDEGLVGLAARLVKLADEDVFRKVVGLL 1320
MPRSSRYEDRANILRGSEDT FRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DETIVDNRGRTAYQRLP IDNVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCRARPDKVRL+TAKILDPTAAGNQPQQRDEGLVGLAARLVKLADEDVFRKVVGLL
Sbjct: 1 MPRSSRYEDRANILRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXXPNDEVVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFRLANATTVLHVAAEYNEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------DETIVDNRGRTAYQRLPAIDNVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCRARPDKVRLQTAKILDPTAAGNQPQQRDEGLVGLAARLVKLADEDVFRKVVGLL 422
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.430e-33 Identity = 77/137 (56.20%), Postives = 86/137 (62.77%), Query Frame = 1 Query: 19 YEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 429
YE+RA+IL+ DTIF+LVCDRATPEQWAEWLRAPLEHAA T + DLV KLL AGAN GW GC GKTLLHAAAEGGN VI +L RAGA D + TP ADV++LD D
Sbjct: 4 YEERASILQDLGDTIFKLVCDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVGAGWRGCHGKTLLHAAAEGGNVHVITSLRRAGAGRDMKAKSLDTGHTPLDLAVIGGKEAAAKALIMAGADVNTLDATND 140
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI) HSP 1 Score: 135 bits (341), Expect = 1.390e-32 Identity = 75/137 (54.74%), Postives = 84/137 (61.31%), Query Frame = 1 Query: 19 YEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 429
YE+R++IL+ DT F+LV DRATP+QWAEWLRAPLEHAAAT + DLV KLL AGANG GW GC GKTLLHAAAEGGN QVI L AGA D A TP A+V+ LD D
Sbjct: 46 YEERSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAKALDTGHTPLDLAVIGGKEAAAKALIMAGANVNMLDATND 182
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI) HSP 1 Score: 133 bits (335), Expect = 4.910e-31 Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 1 Query: 22 EDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKD 306
EDRA L + IF+L+CDRAT EQWAEWLRAPLEHAA TA+ DLV+KLL AGA+GS GW GCD KTLLHAAAEGGN +V+ AL+RAGA D +
Sbjct: 9 EDRAKTLGDAAGIIFKLMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGADGSAGWRGCDDKTLLHAAAEGGNEEVVTALVRAGAGEDME 103
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: A0A6H5JXY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY4_9PHAE) HSP 1 Score: 126 bits (316), Expect = 4.280e-28 Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 1 Query: 7 RSSRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQ-VIMALLRAGAAGD 300
R EDRA IL + D IF L+CDRAT EQWAEWLRAPLEHAA TA+ DLV+KLL AGANGS G GCD TLLHAAAEGGN + V+ AL++AGA D
Sbjct: 6 REDDAEDRAKILGDAADMIFELMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGANGSAGRRGCDDNTLLHAAAEGGNEEEVVTALIKAGAEED 104
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D7FQP2_ECTSI (Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP2_ECTSI) HSP 1 Score: 122 bits (306), Expect = 1.100e-27 Identity = 67/136 (49.26%), Postives = 80/136 (58.82%), Query Frame = 1 Query: 22 EDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 429
EDR IL + D IF+L+CDRAT EQW EWLRAPLEHAA TA+ DLV+KLL AGA+GS GW GCD TLLHAA V+ AL+RAGA D + TP ADV+++D + D
Sbjct: 9 EDRVKILGDAADMIFKLMCDRATSEQWTEWLRAPLEHAAGTANRDLVEKLLKAGADGSAGWRGCDDNTLLHAAXXXXXXXVVTALIRAGAGEDMEAKTPGTGGTPLHVAVMRGQEAAARVLVLAGADVNAVDHNTD 144
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D7G2A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A9_ECTSI) HSP 1 Score: 115 bits (288), Expect = 3.110e-27 Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 1 Query: 28 RANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGC-DGKTLLHAAAEGGNAQVI 267
RA I++ DTIF+LVCDR T EQW+EWLRAPLEHAAATA+++LV KLL AGANG W GC D KTLLHAAAEGG+A V+
Sbjct: 2 RARIMQDLGDTIFKLVCDRVTAEQWSEWLRAPLEHAAATANYELVSKLLRAGANGGASWRGCHDDKTLLHAAAEGGDALVV 82
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D7FM65_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI) HSP 1 Score: 120 bits (301), Expect = 1.430e-26 Identity = 66/137 (48.18%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 13 SRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTD 423
S ++DR + L G+ D I LVCD ATP QW +WLR PLEHAA T + LV+KLL GAN S GW GCDG+TL+HA AEGG+ QVI L RAGA + A TP ADV+ LD D
Sbjct: 2 STHQDRKSTLHGTGDMILDLVCDLATPRQWTKWLRVPLEHAAGTGNAALVEKLLKVGANASAGWRGCDGRTLMHAGAEGGSEQVISMLTRAGAGKYINDQAPLSGLTPLHLAVSGGKLAATKVLMLAGADVNRLDAD 138
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI) HSP 1 Score: 112 bits (279), Expect = 5.130e-23 Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 1 Query: 13 SRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTP 336
+ +++R L G+E+ +F+LV ATP QWAEWLRAPLEHA A + L LL AGA+G GW GCDG++LL A +GGN++ + ALL AG+ GD + R+P
Sbjct: 2 ANFDERTAALGGTEEQLFKLVSRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDVAVQGGNSKTVSALLEAGSLGDVNAVTGSDRRSP 109
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Match: D8LDP2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP2_ECTSI) HSP 1 Score: 108 bits (271), Expect = 4.410e-22 Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 22 EDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERT 333
EDR L+G E +F+LV ++AT QW+EWLRAPLEHA A D DL LL AGANG +GW GC+ +TLL AAAEGGN +V+ LL G + D A+ ++RT
Sbjct: 5 EDRT-ALKGLEKRLFKLVSEKATSAQWSEWLRAPLEHAVAEGDKDLALTLLKAGANGGSGWEGCNDRTLLQAAAEGGNEEVVSTLLGKGGLEEIDVASGDQDRT 107 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.800.1 >prot_Ecto-sp6_S_contig101.800.1 ID=prot_Ecto-sp6_S_contig101.800.1|Name=mRNA_Ecto-sp6_S_contig101.800.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=441bp MPRSSRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADback to top mRNA from alignment at Ecto-sp6_S_contig101:323394..325657- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.800.1 ID=mRNA_Ecto-sp6_S_contig101.800.1|Name=mRNA_Ecto-sp6_S_contig101.800.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:323394..325657- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:323394..325657- >mRNA_Ecto-sp6_S_contig101.800.1 ID=mRNA_Ecto-sp6_S_contig101.800.1|Name=mRNA_Ecto-sp6_S_contig101.800.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1323bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:323394..325657- (Ectocarpus species6 EcLAC_371)back to top |