mRNA_Ecto-sp6_S_contig101.786.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: D7FPM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM0_ECTSI) HSP 1 Score: 323 bits (829), Expect = 6.990e-108 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 Query: 19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE Sbjct: 1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 165
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A835YTI9_9STRA (Ribosomal protein L11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI9_9STRA) HSP 1 Score: 278 bits (711), Expect = 5.250e-90 Identity = 138/165 (83.64%), Postives = 155/165 (93.94%), Query Frame = 1 Query: 19 MGPPPP-TGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPD 510 MGPPPP + E +YV+LRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQK+T +WKGLPITVKLTI+NRQATVSVIP+ASSLILKALNEPERDRKKVK++KHDGNVTLDQ+I++ARVMR RSMARTLAGTVKE+LGT SVGCTVNG +PRD+Q I++GEIVIPD Sbjct: 1 MGPPPPASAEEKYVVLRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKSTMDWKGLPITVKLTIVNRQATVSVIPSASSLILKALNEPERDRKKVKHVKHDGNVTLDQIIDVARVMRARSMARTLAGTVKEVLGTAFSVGCTVNGMAPRDVQKAITDGEIVIPD 165
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S2UAZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAZ7_9STRA) HSP 1 Score: 259 bits (663), Expect = 8.690e-83 Identity = 122/165 (73.94%), Postives = 152/165 (92.12%), Query Frame = 1 Query: 19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513 MGPPP + + Q VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T +WKG+ +TVKLT++NRQATV++IPAASSLI+KALNEP RDRKKVKN+ H+GN+TL+QVI+IA+VMRERSMAR L+GTVKE+LGTCNS+GCTVNG+SPRDIQ+GI +GE+VIPDE Sbjct: 1 MGPPP-SNDVQIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGMNVTVKLTVVNRQATVTMIPAASSLIMKALNEPVRDRKKVKNVVHNGNITLEQVIDIAKVMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVVIPDE 164
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S1E7R7_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E7R7_9STRA) HSP 1 Score: 252 bits (644), Expect = 1.060e-79 Identity = 118/165 (71.52%), Postives = 148/165 (89.70%), Query Frame = 1 Query: 16 TMGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPD 510 TMGPPP + + + VI+R +GGE+G+ ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT++NRQATVS+IP+ASSL++KALNEP RDRKKVKN+KHDGN+ LDQ+IEIAR MRERSMA+ LAGTVKE+LGTCNS+GCTVNG+SPRD+Q I +GE+ IP+ Sbjct: 15 TMGPPP-SDDVKIVIMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATLDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVKHDGNIALDQIIEIARQMRERSMAKKLAGTVKEILGTCNSIGCTVNGESPRDLQQMIDDGEVEIPE 178
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7R9U1B9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B9_9STRA) HSP 1 Score: 251 bits (641), Expect = 3.800e-79 Identity = 117/165 (70.91%), Postives = 146/165 (88.48%), Query Frame = 1 Query: 19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513 MGPPPP GE + VI+RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+ T +WKGL +TVKL ++NRQATVSVIP++SSL++KALNEP RDRKKVK++ HDGN+TLDQVI++AR+MRERSMART+ GTVKE+LGTC S+GCTVNG+ P+ +Q I++GE+ I DE Sbjct: 22 MGPPPPAGEEKVVIMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKAATMDWKGLAVTVKLVVVNRQATVSVIPSSSSLVMKALNEPPRDRKKVKHVVHDGNITLDQVIDVARIMRERSMARTMGGTVKEILGTCVSIGCTVNGEHPKTLQQQITDGELEIADE 186
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S3PV60_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV60_9STRA) HSP 1 Score: 249 bits (636), Expect = 1.030e-78 Identity = 119/165 (72.12%), Postives = 146/165 (88.48%), Query Frame = 1 Query: 19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513 MGPPP + E + VI+R +GGEV ++LAPK+GPLGLSPKK+GEDIQK T++WKGL +TVKLT++NRQATV++IP++SSLI+KALNEP RDRKKVKN+ HDGN+TLDQVIEIAR MR+RS A+ L+GTVKEMLGTCNS+GCTVNG SPRD+Q+GI +GEI IP E Sbjct: 1 MGPPP-SDEVKIVIMRTVGGEVAAASSLAPKIGPLGLSPKKVGEDIQKATKDWKGLSVTVKLTVVNRQATVTMIPSSSSLIMKALNEPVRDRKKVKNVTHDGNLTLDQVIEIARAMRDRSCAKELSGTVKEMLGTCNSIGCTVNGDSPRDVQAGIDDGEIEIPAE 164
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: B8BTS3_THAPS (RL12, ribosomal protein 11 60S large ribosomal subunit n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8BTS3_THAPS) HSP 1 Score: 249 bits (635), Expect = 1.450e-78 Identity = 116/161 (72.05%), Postives = 146/161 (90.68%), Query Frame = 1 Query: 31 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513 PP+ + + VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT++NRQATVS+IP+ASSL++KALNEP RDRKKVKN+ H+GN+TLDQVI+IAR MRERSMA+ LAGTVKE+LGT NS+GCTVNG+SPRDIQ+GI +GE+ IP+E Sbjct: 4 PPSDDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVVHNGNITLDQVIDIARQMRERSMAKKLAGTVKEILGTANSIGCTVNGESPRDIQAGIDDGEVEIPEE 164
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S1BV82_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BV82_9STRA) HSP 1 Score: 245 bits (625), Expect = 4.660e-77 Identity = 117/165 (70.91%), Postives = 146/165 (88.48%), Query Frame = 1 Query: 19 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513 MGPPP + + + VI+R +GGEVG ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT++NRQATVS+IP+ASSL++KALNEP RDRKK KNI H+GN+TLDQVI+IAR MRERSMA+ L+GTVKE+LGT NS+GCTVNG++PRD+QS I +GE+ IPDE Sbjct: 1 MGPPP-SDDVKIVIMRTVGGEVGAASSLAPKIGPLGLSPKKVGEDIQKATLDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKEKNIVHNGNITLDQVIDIARQMRERSMAKELSGTVKEILGTANSIGCTVNGENPRDVQSAIDDGEVEIPDE 164
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: A0A7S1XKH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKH5_9STRA) HSP 1 Score: 246 bits (627), Expect = 6.170e-77 Identity = 115/161 (71.43%), Postives = 145/161 (90.06%), Query Frame = 1 Query: 31 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513 PP GE + V++RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+K T +WKGL +TVKL ++NRQATVSVIP+ASSL++KALNEP RDRKKVK++ HDGN+TLDQVI++ARVMRERSMAR L+GTVKE+LGTC S+GC+VNG++PR +Q I++GE+ IP+E Sbjct: 33 PPAGEEKIVVMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKKATMDWKGLSVTVKLVVVNRQATVSVIPSASSLVMKALNEPVRDRKKVKHVVHDGNITLDQVIDVARVMRERSMARELSGTVKEILGTCVSIGCSVNGENPRTLQQQITDGELEIPEE 193
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Match: K0TFA0_THAOC (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=K0TFA0_THAOC) HSP 1 Score: 243 bits (621), Expect = 1.870e-76 Identity = 114/161 (70.81%), Postives = 145/161 (90.06%), Query Frame = 1 Query: 31 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 513 PP+ + + VI+R +GGEV +ALAPK+GPLGLSPKK+GEDI K T++WKGL +TVKLT++NRQA+VS+IP++SSLI+KALNEP RDRKKVKNI H+GN+TLDQVI+IA+ MRERSMA+ L+GTVKE+LGTCNS+GCTVNG+SPRDIQ+GI +GE+ IP+E Sbjct: 4 PPSDDVKIVIMRTVGGEVAPASALAPKIGPLGLSPKKVGEDIMKATKDWKGLNVTVKLTVVNRQASVSMIPSSSSLIMKALNEPYRDRKKVKNIVHNGNLTLDQVIDIAKQMRERSMAKKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEE 164 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.786.1 >prot_Ecto-sp6_S_contig101.786.1 ID=prot_Ecto-sp6_S_contig101.786.1|Name=mRNA_Ecto-sp6_S_contig101.786.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=166bp MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTback to top mRNA from alignment at Ecto-sp6_S_contig101:195418..199955+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.786.1 ID=mRNA_Ecto-sp6_S_contig101.786.1|Name=mRNA_Ecto-sp6_S_contig101.786.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4538bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:195418..199955+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:195418..199955+ >mRNA_Ecto-sp6_S_contig101.786.1 ID=mRNA_Ecto-sp6_S_contig101.786.1|Name=mRNA_Ecto-sp6_S_contig101.786.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:195418..199955+ (Ectocarpus species6 EcLAC_371)back to top |