Homology
BLAST of mRNA_Ecto-sp6_S_contig101.780.1 vs. uniprot
Match: D7G2U7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2U7_ECTSI) HSP 1 Score: 172 bits (436), Expect = 9.520e-52 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1 Query: 22 MLPTAQPAPAMDSSVNAEVKLEPTGVVKQFEDLIETVISTIQEPEVTEAGVAAVMARLQAYSDGINRLVETLPPEAANGNERGVGVGRAGV 294
MLPTAQPAPAMDSSVN EVK+EPTGVVKQFEDLIETVISTIQEPEVTEAGVAAVMARLQAYSDGINRLVETLPPEAANGNERGVGVGRAGV
Sbjct: 1 MLPTAQPAPAMDSSVNTEVKVEPTGVVKQFEDLIETVISTIQEPEVTEAGVAAVMARLQAYSDGINRLVETLPPEAANGNERGVGVGRAGV 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.780.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7G2U7_ECTSI | 9.520e-52 | 97.80 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 756 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-16_001540.1 |
| Cds size | 276 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348729.2332935-UTR-Ecto-sp6_S_contig101:89009..89468 | 1682348729.2332935-UTR-Ecto-sp6_S_contig101:89009..89468 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig101 89010..89468 - |
| 1682348729.275698-UTR-Ecto-sp6_S_contig101:91347..91368 | 1682348729.275698-UTR-Ecto-sp6_S_contig101:91347..91368 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig101 91348..91368 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348729.2460735-CDS-Ecto-sp6_S_contig101:89468..89651 | 1682348729.2460735-CDS-Ecto-sp6_S_contig101:89468..89651 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 89469..89651 - |
| 1682348729.268635-CDS-Ecto-sp6_S_contig101:91254..91347 | 1682348729.268635-CDS-Ecto-sp6_S_contig101:91254..91347 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 91255..91347 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.780.1 >prot_Ecto-sp6_S_contig101.780.1 ID=prot_Ecto-sp6_S_contig101.780.1|Name=mRNA_Ecto-sp6_S_contig101.780.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=92bp
MLPTAQPAPAMDSSVNAEVKLEPTGVVKQFEDLIETVISTIQEPEVTEAG
VAAVMARLQAYSDGINRLVETLPPEAANGNERGVGVGRAGV* back to topmRNA from alignment at Ecto-sp6_S_contig101:89010..91368- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig101.780.1 ID=mRNA_Ecto-sp6_S_contig101.780.1|Name=mRNA_Ecto-sp6_S_contig101.780.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2359bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:89010..91368- (Ectocarpus species6 EcLAC_371)
GTCTCTCGTTTGACGTGCAGCATGTTGCCAACAGCACAACCAGCGCCAGC
AATGGATTCTTCCGTGAATGCGGAGGTGAAGCTGGAGCCGACGGGGGTCG
TCAAGCAGTTCGAGGTGAGCGAAATAGCGCGTGAAGAACACAGATGGAGA
TTCTCCACCTTTTCCCCTGTTGCTCGGAAACGAACGCCCTTTGCTTGCCT
TGTTGGCATCGCGTGATTTTGAATCACGAAGCAGGCGTGCTGATGGCGAA
CGGCCGCGGAGATGCGGCGTTCCTGTTACTCCAGCCGTATGCCGACTCCT
TTCTGTACCGCACGTGCTGCGAAAGAGTGGGGTATGGCTGCACGTGAAGT
GTCCGCACGGAAATACTGCTGTTGAACGGCTCGTAGATCCCGCTCTCTCA
CCTTTTCTCCCCCCTTTCCCCAACCTACACACCGAAAGCTGTGCGTGTTT
TGAACTCTTACCGCCATGCCAGCGATCGAGTTCAAACCCATACTAGCGTC
TTTCACTTGTTATTGGTTCAAAAGTACTCGCTACGCAGGATACGGTGGTC
AGGTCAAGCCCTCCCGTTATTTGACACCTCAGCGCATACATTGGCAGTGT
ACATGGAGCGGACCCTTCCCACAAGATCCCCTCGTACGCGGACAATCTCG
TTTTCCAAAGTCAAACCCGCATGCGCCAGTCCAAAAGCGAACGGCCTGGT
CTTTCCCAGTCCCGAGAGATGTCATTCAGCCGCAACATGGGATTTTGGAG
GGGTTCGGCAGTGTAGTAACAGCAGTTTTGCTTCATTGGCGTTTGGGATG
GAGAGCAATCACGCACGTACTTCGAGCCCATGTCTCCCCCCCCCCCCCGC
TACGTAGAGGGCCCATCGTCGAAGACTTGCGGTATAGGCCCGGCCCAGGC
TCCATACATCCCCTTCAGCGCCCCGACCGGCGCGTGTGCAAGCCCGGGGC
ATCATGCCCTTACCTGCCTTGTCTTTTTTGTTCAGATGTCAAAGATAAAT
TGAACGCTGAACTGGCTTCGCGCAGCGGCATGACGTGCGCGTCTGGGGGT
TGTTCGCGGCTAACAAAAATGTGTTGTCGACATGTTGTTGGAGGCGCTGG
CTATGTGACCAGCTGACCGAGTCCTCTCAGGGGTGGATGTACGCGCTTGA
ACGAGGTCCACTCCTGGTTGGATTGCGTGCATATCCTCTCTGGCAGCAGT
GAGAGAGGTGTGGCGCTCTCTTGCAGGCGGTACCTCCGCCGTGAAGCGTC
TACGGCATGTCCTTCTTTGCTCTCGTTTGAAATTCAAGACTACCGCTCTG
TCCGGAAACCTATGGCAGATTTGGAGTTATGATAGGCCCGAAAGCAGCAG
CAACGTTCGCTAGGAGTGCCGGGTGCGCCTAGCTGTCTCCGTACGGCATG
TTCTTGGCTCGAGTTGGCGTTCTCCGCGTGTACAGTCGTCGTTCTTGGAT
CGAACGAAGAAAATGCACCAAGCGGATCATTCGTGGGCATTCCTCTCTCC
CTCCCTCCCCCCCCCCCTTCCCTTCGAAACAACAAACATCACACCGGCGT
GTTCACACCAACAATAACGCCACAAATACCGCTCTCGCAGTTGTAAAAGC
CCACACCAGCAGTAACAGCAGTTGCTTGGTCGTGCCTTCCAACCATCGTG
CGTCTCCATTCGTTTACCCCCCCGCTCTCCTCTCCTTGCGCGCCCCGCCC
TCGGCACTGGTGCTCAGGACCTGATTGAGACGGTCATCAGCACCATCCAA
GAGCCGGAAGTCACGGAGGCCGGCGTCGCGGCCGTAATGGCGAGGCTCCA
GGCTTACAGCGACGGGATAAACCGGCTCGTCGAGACCCTGCCGCCAGAGG
CCGCCAACGGCAACGAGAGGGGCGTAGGAGTAGGGCGGGCAGGGGTTTGA
TGAATACTGAGATTTGGGGTGAGATTTTGTTTCACTTGGGAGGGAGAGCC
GCGTAGGTATTACTAAAAATATTCTATTGTCCTTTTTTTTTCTTTACGCA
GCTCGTTCCTCTTTTTACTTCCTCGCACCCTGTATTGCTACCGCTTCTGG
AGTTTCCCCTTGATCTGAGACTGCGTTTTGGTGGTCGGCGACGAGGATCA
GCCGTCGCTCTCAACCTCGTTCTCAACCGCATGTCGGCTGGCTTGCATTG
ACAGCATTCCCTTGAGCGCTGGGCTTGATTTTCTTGAGGTAGACTTATCG
GCAATTGCTTGTTCCGTGTGCGGGCCGGCCACTATGAAGCGCCCCGGCGA
TGACTGCAGTCTCTTGTCTGGTACTGGTGCAATCGGCCTCGGGGCCTGTC
GGGTGCTATTTGCCGTCGTGCCATACAATCGATTTCGATTCCCAACGCAA
AAGAGGAGG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig101:89010..91368- >mRNA_Ecto-sp6_S_contig101.780.1 ID=mRNA_Ecto-sp6_S_contig101.780.1|Name=mRNA_Ecto-sp6_S_contig101.780.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:89010..91368- (Ectocarpus species6 EcLAC_371)
ATGTTGCCAACAGCACAACCAGCGCCAGCAATGGATTCTTCCGTGAATGC
GGAGGTGAAGCTGGAGCCGACGGGGGTCGTCAAGCAGTTCGAGGACCTGA
TTGAGACGGTCATCAGCACCATCCAAGAGCCGGAAGTCACGGAGGCCGGC
GTCGCGGCCGTAATGGCGAGGCTCCAGGCTTACAGCGACGGGATAAACCG
GCTCGTCGAGACCCTGCCGCCAGAGGCCGCCAACGGCAACGAGAGGGGCG
TAGGAGTAGGGCGGGCAGGGGTTTGA back to top
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