Homology
BLAST of mRNA_Ecto-sp6_S_contig101.774.1 vs. uniprot
Match:
D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)
HSP 1 Score: 244 bits (623), Expect = 1.390e-72
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 1
Query: 1 EQLSLWGVQPPPGLARQYATRHGERGGGMQNMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL 366
EQLSLWGVQPPPGLARQYATRHGERGGGM NMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL
Sbjct: 133 EQLSLWGVQPPPGLARQYATRHGERGGGM-NMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL 253
BLAST of mRNA_Ecto-sp6_S_contig101.774.1 vs. uniprot
Match:
A0A6H5L6M1_9PHAE (UBA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M1_9PHAE)
HSP 1 Score: 239 bits (611), Expect = 5.880e-71
Identity = 117/122 (95.90%), Postives = 120/122 (98.36%), Query Frame = 1
Query: 1 EQLSLWGVQPPPGLARQYATRHGERGGGMQNMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL 366
EQLS+WGVQPPPGLARQYATRHGERGGGM NMMTMNDFMESD+ALNQMLRS+TPQGAGGAGAPPLVRVVRGTGG DTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL
Sbjct: 2182 EQLSMWGVQPPPGLARQYATRHGERGGGM-NMMTMNDFMESDSALNQMLRSLTPQGAGGAGAPPLVRVVRGTGGGDTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL 2302
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.774.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.39e-72 / Id = 99.18 Expect = 5.88e-71 / Id = 95.90 Sequence D7G3W3_ECTSI A0A6H5L6M1_9PHAE
Match Name E-value Identity Description
D7G3W3_ECTSI 1.390e-72 99.18 HECT domain-containing protein n=1 Tax=Ectocarpus ... [more] A0A6H5L6M1_9PHAE 5.880e-71 95.90 UBA domain-containing protein (Fragment) n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 0 Seed ortholog score 243.4 Seed ortholog evalue 5.4e-62 Seed eggNOG ortholog 2880.D7G3W3 Preferred name UPL1 Model size 368 KEGG ko ko:K10592 KEGG Pathway ko04120,map04120 Hectar predicted targeting category other localisation GOs GO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234 Exons 4 EggNOG free text desc. ubiquitin protein ligase activity EggNOG OGs COG5021@1,KOG0939@2759 Ec32 ortholog description Domain of unknown function DUF4414 Ec32 ortholog Ec-00_007160.3 EC 2.3.2.26 Cds size 366 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko01000,ko04121
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348728.4008002-CDS-Ecto-sp6_S_contig101:14636..14703 1682348728.4008002-CDS-Ecto-sp6_S_contig101:14636..14703 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 14637..14703 - 1682348728.4093847-CDS-Ecto-sp6_S_contig101:15175..15231 1682348728.4093847-CDS-Ecto-sp6_S_contig101:15175..15231 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 15176..15231 - 1682348728.416562-CDS-Ecto-sp6_S_contig101:15972..16128 1682348728.416562-CDS-Ecto-sp6_S_contig101:15972..16128 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 15973..16128 - 1682348728.42407-CDS-Ecto-sp6_S_contig101:16640..16727 1682348728.42407-CDS-Ecto-sp6_S_contig101:16640..16727 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 16641..16727 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.774.1
>prot_Ecto-sp6_S_contig101.774.1 ID=prot_Ecto-sp6_S_contig101.774.1|Name=mRNA_Ecto-sp6_S_contig101.774.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=122bp
EQLSLWGVQPPPGLARQYATRHGERGGGMQNMMTMNDFMESDAALNQMLR back to top mRNA from alignment at Ecto-sp6_S_contig101:14637..16727-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.774.1 ID=mRNA_Ecto-sp6_S_contig101.774.1|Name=mRNA_Ecto-sp6_S_contig101.774.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2091bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:14637..16727- (Ectocarpus species6 EcLAC_371)GAGCAGCTGTCTCTGTGGGGGGTGCAGCCGCCGCCGGGCCTGGCGAGACA
GTACGCGACGCGGCACGGGGAGCGTGGGGGAGGAATG GTGGGTCTCTACT
TTTTTTTTTTTTTTTTTTTTTTTGGCGAACGTTGCCGGTTTCGTGTTTTT
GTTCCGAGGGGAGCGCGGGGAGGGGATGGTCGGTTTGGTTTGGTTATGTT
GAATTATGTTTGTCGATTTTTGAGAGGTTTCGTGTGTTGTGTGTGTTGTT
TGCAACGCGACCGCGCTAACCGGCTGACCAATGAAAATGTTGTCAGTCTC
AGGGCGTGTGCGTGGCCTGTGCGTGCTTTGTTTGTGTGGCTGAGCGTGGG
TTTTGGATTCCGAGATCTCAGTGTCCCTACCCATTACATGTCCCTGGTCG
TGGTTTGATGTCTCTGCGCTGGGTTGTGTAGGATATTCCACACACCCACA
ACACACACACCAGTTCATGGCATTTAGTAGAAGTGTTTTGTGTTTTCAAC
CGCACTGAGACTGACGTCTTTTCATTGGTCAGCCGGTCAGCGCGGTCGAT
GCTAATATTAAAAACACACACACGCACACCTGTTCTTTGCTTGTACCAGC
AGAACATGATGACCATGAACGACTTCATGGAGAGCGACGCCGCTCTGAAC
CAGATGCTTCGCTCCGTCACTCCCCAAGGCGCGGGCGGCGCCGGCGCCCC
TCCCCTCGTCCGCGTTGTTCGCGGGACCGGTGGGGCAGACACGGGTTGGA
CTGAG GTAGGACGAGTAAACAATTTTAAATAGTAGTTGTTGGTTGTTGCT
ATTGTTGTTTTGTCTTCACGCCAAAAGCCGCCCCGATCTCTCTACCCAGT
ACCTTCATATTTGTTCAGTAGTGGTACCGGTATGTCGGGGTCCCGAGTTG
TTGTTGTCTTCACATTAAGATCCGCCCCGATCTCTCTACCGTACCTTCGT
CTATGTTCAGTAGTGGTACCGATATGTCGGGGTCCCGAATAGCGTGGTTC
CCGATAAAATCGCGGTAAGAAAATCCTTGACGCAGCAACTTACGTATGCA
TAGTCTTCTACTAAATTCGTGTTCAGAGACCTGAGCGCGGGTTCGTATAA
AACACGGTAATTCTCGTCGATCACTTGTATGCATATCGGGACCTCCACTG
TATGGGTGGACAGGAGGCGTGTTTCTCGCGTCTGGTTCTCTGGTAGGTAC
GGGCAACCGGCCCACGACGTGATGGAGCGCGCTCGGATGTATGTTTTGGG
AGGAGGCCGTGGTGGTTGGGAAGAAAGGGGCATGCTGATGTCGCCGCAAG
GGGTTTGGAGGAGGCCGTAGGGGTTGGGAAGAGAAGGGCAGGCTGATGTT
GTCGTCGCAAGGGGGGTTGGTTTGTGCTACGGCGGGGATGTCGATCCACT
TCACCCTTCTCACGTGTTCGTCGTGCATGCCCGGCCGCCTTTTTCACCTC
TGCTCATCTCTCCTTCTCGGTGTCTCTCGGCTTCGGTCCAAAGCAGATGA
TCGCACATGACCTCCATGCGGCAGCGCCAGGGCCTTCGCACAACACCACC
AG GTGGGAAAGCCAGTGTCAATAGCGGGCCTGGCTCTGGGTGAACGGCTG
GGGGGATGTTTAACCGGTGGCGTGCCTTGACCGCCGGCCTTCGTGCCCTC
TCTGCCCTCGTTCGTTCGTTCATTCACGAATGGAGACAATTCTGGAAGTA
GCCTCCACCCTCCAACCGTCCCGCACACGCAAGACTGGTATGTATTCCGT
AACTAGCCGGCTAGGTGGCGCTGTGGATACCATTCAAGAAAAGGCTTAGA
GTGAGAGGCAGCGAGAGAGAAGAGAGATTAACTCGATGGCATTTCATTGG
TCGTCCGGTTAGCACGGTCCGACGCTATCTAAGGAGCGGGTAGTACAAGT
ATAGTCTTTCCGTGATCGTATTCCAGTGTATATTTCTATCGCGGCCAACC
CCCACGTTGCCCTTACCCTCAACCCCGCCGCCGCCCCTGCCCCTCCCCCT
ACACATCGTTGTTGTTATCGGCAGACTCTTCCCGGACGGCCCGTCGGCGG
CCACCCAGGCGCACGCCGCCCCCGTCGTGCACCCGCTCCTC back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:14637..16727-
>mRNA_Ecto-sp6_S_contig101.774.1 ID=mRNA_Ecto-sp6_S_contig101.774.1|Name=mRNA_Ecto-sp6_S_contig101.774.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:14637..16727- (Ectocarpus species6 EcLAC_371) back to top