mRNA_Ecto-sp6_S_contig101.772.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE) HSP 1 Score: 180 bits (456), Expect = 1.580e-50 Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAA XXXXXXXXXXXXXXXXLEQEARNRR+REAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPP+LV Sbjct: 516 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPDLV 634
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI) HSP 1 Score: 132 bits (332), Expect = 1.980e-33 Identity = 73/91 (80.22%), Postives = 74/91 (81.32%), Query Frame = 1 Query: 85 EDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357 EDQAELLEAAGL LEQEARNRR+REAPGNAGGP DPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV Sbjct: 602 EDQAELLEAAGLDPEALAALPADMRREVLEQEARNRRMREAPGNAGGPVDPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 692
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A7S4HZ14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HZ14_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.020e-19 Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVG----SMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNL 354 MD +VF LPPDMQ+EV+ EH ST G + +L + L XX +EQE R RR RE + PADPS A EMDNASFVA+L P+LR E+LL+ADDA L +LPP++ Sbjct: 193 MDLEVFNSLPPDMQREVIAEHESTTGGGGSTAASDVQLDSTSALDPEALAALPEEMRXXVIEQERRERRAREEE-RSEPPADPSNAEEMDNASFVASLAPDLREEILLTADDAFLGSLPPDM 313
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A7S1VJ82_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJ82_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.990e-16 Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNL 354 MD + F LPPDMQQEVV +H+ T E A+L +GL + Q+ RR RE A PADPS A+EMDNASF+ +L PELR E+LL+AD+ L++LPPN+ Sbjct: 1770 MDAEAFNSLPPDMQQEVVSQHQITE---ELTAQLDPTSGLDPSVLAELPEDMRRDAIAQD---RREREEAARAAQPADPSNAAEMDNASFLVSLAPELREEILLTADENFLNSLPPNI 1881
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: I2CQM8_NANGC (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM8_NANGC) HSP 1 Score: 79.3 bits (194), Expect = 2.600e-16 Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357 MDP+ FA LP ++Q+E+ +EH G++ L + L L +EAR RR REA A PA+P+ A+EMDNASF+A+LPP+LR EVLL D +L++LPPN+V Sbjct: 1 MDPEAFACLPAEIQRELAQEH----GTLPTP---LPGSSLDPEALSALPEALRNEVLAEEARERRQREATA-ARAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVV 111
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A7S2Y5L7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5L7_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.720e-15 Identity = 73/119 (61.34%), Postives = 86/119 (72.27%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357 +DP+ F LP +MQ +VVREH S E AEL + + LXXXXXXXXXXXXXXXX EQE R R RE PADPS A++MDNASF+ATLPPELR EVL +ADD L++LPPNL+ Sbjct: 408 VDPEAFRALPREMQLDVVREHSQ---SSELAAEL-DGSTLXXXXXXXXXXXXXXXXXEQERRER-SRET--EEAAPADPSLAADMDNASFIATLPPELRAEVLATADDETLNSLPPNLI 519
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A835YKJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKJ8_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.690e-14 Identity = 66/119 (55.46%), Postives = 80/119 (67.23%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357 MD +VFA LP +MQQE++ + + +AAG XXXXXXXXXXXXXX E EAR +RL + + PADPS A EMDNASFVA+L P+LR E+LL AD+ LSTL PNLV Sbjct: 1 MDAEVFASLPREMQQEILSPSSAAPPAQ------AQAAGWDPXXXXXXXXXXXXXXXEAEARRQRLAASAAD-DIPADPSHAQEMDNASFVASLAPDLRAEILLQADEQFLSTLSPNLV 112
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: W7TP10_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP10_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.930e-14 Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357 MDP+ FA LP ++Q+E+ +EH G++ L + L L +EAR RR REA PA+P+ A+EMDNASF+A+LPP+LR EVLL D +L++LPPN+V Sbjct: 1 MDPEAFACLPAEIQRELAQEH----GTLPTP---LPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRA-PANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVV 111
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A8K1CG71_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG71_PYTOL) HSP 1 Score: 73.9 bits (180), Expect = 6.450e-13 Identity = 55/125 (44.00%), Postives = 63/125 (50.40%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTV---------GSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGG-PADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLP 345 +DPDVFA LPPDMQ E+V +H GS E ++L E A RR REA A PAD SRA EMDNASFVA+L P LR E+L + DDA L TLP Sbjct: 2754 VDPDVFASLPPDMQAEIVAQHAPAPAPTTSAPAGGSTEGLSQLEIDMANSSFDRETLEALPPDIRAEVLANERREREAAARAAETPADISRAEEMDNASFVASLAPGLREEILTTCDDAFLQTLP 2878
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A7S4S0Y2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S0Y2_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 8.740e-13 Identity = 63/119 (52.94%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357 MD +VF LP +MQQEV+ +H++T M +L + XXXXXXXXXXXXXXXX + RR+RE PADP+ A EMDNASFVA+L P+LR E+LL+ADD L++LPP+++ Sbjct: 1598 MDLEVFNSLPLEMQQEVIEQHQAT---MNVATQLDSTSSXXXXXXXXXXXXXXXXXXXXXXQERRMREQT-----PADPANAEEMDNASFVASLAPDLREEILLAADDTFLNSLPPDII 1708 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.772.1 >prot_Ecto-sp6_S_contig101.772.1 ID=prot_Ecto-sp6_S_contig101.772.1|Name=mRNA_Ecto-sp6_S_contig101.772.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=119bp MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLDPEALAALPAback to top mRNA from alignment at Ecto-sp6_S_contig101:9551..10729- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.772.1 ID=mRNA_Ecto-sp6_S_contig101.772.1|Name=mRNA_Ecto-sp6_S_contig101.772.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1179bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:9551..10729- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:9551..10729- >mRNA_Ecto-sp6_S_contig101.772.1 ID=mRNA_Ecto-sp6_S_contig101.772.1|Name=mRNA_Ecto-sp6_S_contig101.772.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:9551..10729- (Ectocarpus species6 EcLAC_371)back to top |