Homology
BLAST of mRNA_Ecto-sp6_S_contig100.768.1 vs. uniprot
Match: A0A6H5JMR2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMR2_9PHAE) HSP 1 Score: 289 bits (739), Expect = 3.610e-93 Identity = 151/158 (95.57%), Postives = 155/158 (98.10%), Query Frame = 3 Query: 234 MQLCVGRSMAMLAMALRNASGFVGPVRFTAARSAGGVLRMSSGPTAASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDVGEVQAAAESTPRQDSVSIPGMGAFGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESREDDGNEYYI 707
MQLCVGRSMAMLA+ALRNASGFVGPVRFTAARSAG VLRMSSGPT+ASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLD+GEVQAAAEST RQDSVS+PGMG FGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESREDDGNEYYI
Sbjct: 1 MQLCVGRSMAMLAIALRNASGFVGPVRFTAARSAGVVLRMSSGPTSASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDLGEVQAAAESTSRQDSVSMPGMGVFGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESREDDGNEYYI 158
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1507 |
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Cds size | 477 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348727.9941685-UTR-Ecto-sp6_S_contig100:644598..644831 | 1682348727.9941685-UTR-Ecto-sp6_S_contig100:644598..644831 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig100 644599..644831 + |
| 1682348728.0386152-UTR-Ecto-sp6_S_contig100:647941..648738 | 1682348728.0386152-UTR-Ecto-sp6_S_contig100:647941..648738 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig100 647942..648738 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348728.003604-CDS-Ecto-sp6_S_contig100:644831..644934 | 1682348728.003604-CDS-Ecto-sp6_S_contig100:644831..644934 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 644832..644934 + |
| 1682348728.0125425-CDS-Ecto-sp6_S_contig100:645229..645393 | 1682348728.0125425-CDS-Ecto-sp6_S_contig100:645229..645393 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 645230..645393 + |
| 1682348728.0216374-CDS-Ecto-sp6_S_contig100:647731..647941 | 1682348728.0216374-CDS-Ecto-sp6_S_contig100:647731..647941 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 647732..647941 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.768.1 >prot_Ecto-sp6_S_contig100.768.1 ID=prot_Ecto-sp6_S_contig100.768.1|Name=mRNA_Ecto-sp6_S_contig100.768.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=159bp
MQLCVGRSMAMLAMALRNASGFVGPVRFTAARSAGGVLRMSSGPTAASRP
SVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDVGEVQAAAESTPRQ
DSVSIPGMGAFGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESRE
DDGNEYYI* back to topmRNA from alignment at Ecto-sp6_S_contig100:644599..648738+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig100.768.1 ID=mRNA_Ecto-sp6_S_contig100.768.1|Name=mRNA_Ecto-sp6_S_contig100.768.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4140bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:644599..648738+ (Ectocarpus species6 EcLAC_371)
ATCGTGTTGGGCAGCGTGCATCCGACAACAAAGCTCCCCGAGTCCGTCCA
CCTTTCTCGCCTCTCGTTTGTACCTTGTTCTATTGATAGCCGCCGTCGCT
GGCGCTTGGGGCGTCAATCCTGCCAGGTTACCCCGAGTTTAATCGGGGCG
CCTCAGTTGCCTCAAGTTGTATAGCATTCGAAGAAAGCAAGCAACCCTCG
AGACAGCAGTCTCACAGCAGTCGACGGAAGGAAATGCAACTGTGTGTAGG
GCGGTCTATGGCGATGCTGGCGATGGCGCTGAGAAACGCCAGCGGCTTCG
TGGGGCCTGTTCGATTCACCGCTGCGAGGTCGGCAGGTGAGCACTCGAGG
GTTTTTGTTCGTACAAGGGTGTGGTGTCTACAAGCGGCACCTTCCGTTCA
GCCGATATCGTTTATCAAGTTGAGGTTGAGGTCTGTTGGCAGCGCGGGAA
GCTTCTGCAGCGATTCCCCGGCCCTCTTTGTCGCGCTGCGCAAATCTTAC
CCCGGCTCATTACAATGCTGGTGTTCTTCTCTTCCACCTTGCTTCAAAAG
TATCTCGACCTCCCCACGGAGGCTTGAAAATCTCCAATTCCACATCCATG
TTGGTTGTGTTGCTGACCTCGCGTGCGCCAGGTGGCGTCCTGAGGATGAG
CTCCGGGCCAACGGCTGCCTCGCGCCCTAGCGTGCCGGTCCTCGACGCGC
AGGCTGCGGAGCTCAAGGCCGAGCGGCTATGGGGTATGGCGGACGCCCAG
AAGCCGGGGCTGTCGGTACCATCTGAGAGATTAGACGTTGGGGAGGTGAG
GTGCTGCTGTTCTGATTCTGCTGTGTTTTTCGTTTTTCGCGTTGTTTGCT
GCGTCCACGCATCAAATCCACGGTTGCTCTCACACACACGTATTGCTCGG
CGATCGATACACGTGGGATTTAAAACACTTTCCCGGCCTTTTTATAGTGG
TGTTGAATTTTCCACTCGCCAATTAACGAAAATGGATGATCAAGAGTTTG
TTGTCGTGCCCATTTCCTTTCTAGATCGTCAGCAACATCTGCTGCATGGA
CAATCGTTCGGCACCTTTGACTGGACAACAATTTAATTACTCAGTCGAGC
GAAAACGCGGGCAACGACAGGCGGCTTTTTCACTCGCTGCAACAGCCCTT
TGCCTTGAGTTCAGTTTAATCGTTTCCAACGCATGGCTGGCGGCGAATTG
AAAAATCGACAGTATCAAGCAGGGAATACTTTGGAAACCAAGGCCGCTTT
CCGTCTACCGTCTTGGTACGAGTTCGGATAGGTAGATACTCCAGTTACAA
TCTAGTCGGCGGGTGGTTGGTTTTCCACACAATGTGCGGCAAAGTTCCCT
CTCTGGACTCAGTTAGGGTTGTGGCATGTGACACCAACGGAAACCTTAAG
TGCCCGCAGTCACGACGCTTCTTTTCTATGTCTCGTGCGTTTTGACATCG
ATGCAACCGTAATTTGAAGTTGTGGTTGTTTTTTGTTATTTGGTTTTGTC
CCCGCTCATGTCTACCTTTTGATATCCATACCGGCGACCTCAGTTTGACT
GAGGGCGGCAGATAATACTTGTACTTGGCGCTTCCTCACCACACACCGGT
CAAAAGAAATTGGCCTTGCCTCCTGTTGTAGGGTAATTTAATACCACTTT
TTGCGATGCTTGGAACCACCATGTTGGCGTTGCTGTCGGACTTTTTCCTC
TCCGCTGGGCCCCGGTTATGTAGGTCGTGTCGTTCCTCGAGGTGGTGTTC
TTCACCTTGGCCGTGGTGAGGCTGTTTCAACACAAATTCTCTTCTTCGAG
CTTTTTTTTAAGAGGCCTCAGCTCTCAAGTTCTGTGACTCAAGTGCGAGT
AGCCTACCAGCTGGAAGCACGGTCAGTTTCTTTTGTCGGCGTGAGGGTAG
GAAGTGCCACATGTTACCGAGCGGATGCAGTTCATGATAAAGTGGAAAGA
AGTAAAAAATAACAGGTCGCTTCCGCTCGGTATGGGACGCCAAACAGAAT
ACGAAGTACAAGATAAAAAAGAACCACCCATCAAGACCATAACAATCGCA
TATTTCTATTTCTATACCCCTGACTCTCAATAGGACGGGGTATACAGCAG
TCACCGCCGGAGTTGCACCAGCCATGCCATTCCCAGACGCACAATCGTTT
TAACAACGTTTGGGGGGCTCAAGATCAAGACACCGGTGATACCTGTATGC
TCGATTCCAACACAAGCAGACAAACTCGTCGCATGGTGTCCCCCGTACCA
TGCCTGGGATATACCCCATGCCAGATTCTCGCCGGACAGGCTAGGCCCCG
CCATACGGAGACACGCATAGGGTTTCCGCGTATTTTATTAAGTACCCATG
CATGTACATTGTCGGAAAAACGTAACTAAACAACAGTGGTGAACACCACA
CGGGTGTTTGGGTGCGGCAGCTTCGTCAGAGGCCGAAAGAGAAATACTTT
GACTCAAGACCTTGATTGATTAGCACCCCAAACATCTGGGAAGGGTGCAG
GAGTTTATCAAGGAATAGTTCAGTAGGCAACTTTTTTTGTTAGTATCCTA
TTTACGTTGCACGTTGCTATGAGCTTTTGCTACACCTTAAATTGGCTTAG
CTTGTACGCGGAGCTTGTTTTTCGCCTCATTTTTTTCACCTGTAATGAGG
GAGGATGGTTGATTTCCCTTTAATTAGTGGGGATGAGGATTTCGCCGCTG
CCGACCCTTTTTCCGTGACTTCTGTCCCGCTGTCAGACCGGTTTGTGTTG
AATCGTGTATTGGTCGTTGGCCTCAAGGAAGAGCGGGAGAGTGGGCAGCC
CAGCCCACAAACAGCTCCATGACACAAGGCTCAACGAATACATATTCCCA
TTCAACATAAATATTGTCATTGTTGGAGGAATAAAAGGTATTGCCGCCAA
GAGGATGGTGGGTAGAGGTAGAGATGATAATGGTTTTTGAAGTGAAGACA
ACAACAGCAACAGCGTGCCAACAACATTAACAACGAGACACGCACTTGTT
CATAGTTCATATCCATGTTCAATTGCCTACCGGATGTAGACTCTTCCCAC
ATGACCTTGCTCGTTACGCAGCGGTCGGCGTCGTAATGGAAGTCCTCTAA
AGTCTTGAGCGCCCTTGAAATTGAACGAAATAGGTCCAAGCGGCTGCTGA
GAGCACGCCGCGGCAAGATTCGGTGAGCATCCCTGGCATGGGTGCTTTCG
GCAAGAGGGAGAGGGACGACTTCATCGAAGGAGAGGGGGAAACATCCGCG
TTGCGGCGGTATCAGTACAGCGATCAGCTTTTGACGGACGACGACAGCGG
AGAAGAGAGCAGGGAAGACGACGGCAACGAGTACTACATTTGATTGGTGC
CTCGTATCCGGACATAGTTAGACTGTAACGTACGTGTACCTCACGCCACC
GGGATAGTGATAGGCTTGAGAATTTCTCTGCGAGGTGCAATCAATCCGCC
GCGGACCGCTTCCGGCGAAATCTGTCGGCTGGGTTTGCTTAGTGTTGATT
CTACCACCGTTTTTTTTTTATCCTGATGGCTTATGTAGCCGCAACTCCGC
CTCGTCTCTGTGGCGGTGTTTTGAATGTGGCTGACTTGTGCTAGCTAGTA
ACTACGGTAAGTAAGTGTGTATGAAACCTGGCAACCCTGAGGCCATGAAG
TGGAAGCTTGTGCTTTAGCTTTGGGCCTGATGGGTTGCGGCCGATCTGCC
TGCAACATATTCGTTTGCGAGTTTCGGGAAATGTTTCAACTTGACGAAGA
AGGTCTTGATAGGAGAGAGCCGTTGTACAGGCAATTCATGAACTTTGCAA
GGCGTTTGAGGCGGTGCTAGCGTCCCGCCGGGAGGACGGGAAATTCTGGT
CTGATCGCAGGGAAACAATCAAATCAAGAACGTTGGTTGTGTAGTGGTTT
CTTTTTCCAGTGTTCCTGTACTACCATGCACTCGCCTGTCCCGCCTCTCT
GCGGAATGCATGTGCTACACATGCTCGCTTTGGTGGCGTTTGGTCTGCTG
CTTGTTTGAAGTCATGAACCCGAGTGGGGTGCAGCGCTTCGCGGTTTAAG
GCCTAACTCATGCATACGGGCAGGTAAAGTGGTTTTAAGTCGAAATGCGA
ATTTTCGGGTAAACATTCATGCCTGGGGCGGCATGCTTCT back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig100:644599..648738+ >mRNA_Ecto-sp6_S_contig100.768.1 ID=mRNA_Ecto-sp6_S_contig100.768.1|Name=mRNA_Ecto-sp6_S_contig100.768.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:644599..648738+ (Ectocarpus species6 EcLAC_371)
ATGCAACTGTGTGTAGGGCGGTCTATGGCGATGCTGGCGATGGCGCTGAG
AAACGCCAGCGGCTTCGTGGGGCCTGTTCGATTCACCGCTGCGAGGTCGG
CAGGTGGCGTCCTGAGGATGAGCTCCGGGCCAACGGCTGCCTCGCGCCCT
AGCGTGCCGGTCCTCGACGCGCAGGCTGCGGAGCTCAAGGCCGAGCGGCT
ATGGGGTATGGCGGACGCCCAGAAGCCGGGGCTGTCGGTACCATCTGAGA
GATTAGACGTTGGGGAGGTCCAAGCGGCTGCTGAGAGCACGCCGCGGCAA
GATTCGGTGAGCATCCCTGGCATGGGTGCTTTCGGCAAGAGGGAGAGGGA
CGACTTCATCGAAGGAGAGGGGGAAACATCCGCGTTGCGGCGGTATCAGT
ACAGCGATCAGCTTTTGACGGACGACGACAGCGGAGAAGAGAGCAGGGAA
GACGACGGCAACGAGTACTACATTTGA back to top
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