mRNA_Ecto-sp6_S_contig100.765.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: A0A6H5K6G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G3_9PHAE) HSP 1 Score: 192 bits (487), Expect = 1.100e-47 Identity = 130/277 (46.93%), Postives = 152/277 (54.87%), Query Frame = 1 Query: 1129 MSYLAELVDHDQYLLIAPVSKAFRRAWGPRATRTRPVMADTSITQLRYCLKLGLPLGTRRTSICNAAARFGKLGV-LELAKEISCGWTRRLVLRPPGGDTLGSSNGFARRAVAGMK*HTGCPRRMPFPGPRMGAVTNRKLAVGDGGPECVPLERTGVRRCCPRRVSRYSGVASEIQLPL**NDMRIGRTSRRLRRS----------LVGFL*RMPFDRESCFWAARRGDVRMLKFRDHDCPWDLGDDGCPCAGAACGGHLEVLKRASRNGCPWDERT 1926
MSYLAE VDH+QYL IAPVS A RRAWG RAT T+PV+ADT+I QLR+CLKL + R TSI NAAA FGK L L + G +RL LRPPGGDTL SSNG RRAV G G RRM FPG RMGAVT+ +LA GD GPE R GV + +S + L + RR R+S L F PFD ES F AAR GD+R++K + +LEVL+ NGCPW+ERT
Sbjct: 1 MSYLAESVDHNQYLFIAPVSTASRRAWGSRATITQPVVADTTIMQLRHCLKLSI----RHTSIWNAAAHFGKSCTSLSLRTKALVGGAQRLELRPPGGDTLRSSNGLKRRAVDGTNFVLGRRRRMSFPGARMGAVTHGELADGDAGPE-----RAGV-------TTFWSVLGDTAALGM-----------RRRRQSAARCGDFDGHLSAFPKECPFDTESWFGAAREGDMRIIKRLNETA------------------NLEVLQWMRTNGCPWNERT 232
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: A0A6H5L0L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L3_9PHAE) HSP 1 Score: 145 bits (367), Expect = 3.910e-35 Identity = 103/249 (41.37%), Postives = 128/249 (51.41%), Query Frame = 1 Query: 1129 MSYLAELVDHDQYLLIAPVSKAFRRAWGPRATRTRPVMADTSITQLRYCLKLGLPLGTRRTSICNAAARFGKLGVLELAKEISCGWTRRLVLRPPGGDTLGSSNGFARRAVAGMK*HTGCPRRMPFPGPRMGAVTNRKLAVGDGGPECVPLERTGVRRCCPRRVSRYSGVASEIQLPL**NDMRI-GRTSRRLRRSLVGFL*RMP--------FDRESCFWAARRGDVRMLKF-RDHDCPWDLGDDGCP 1845
MSY+AE V DQYL I PVSK FRRAWGPRAT TRPV+ADTS+ QLR CLKL LPL RRTSICNAAARFG+L +LELA+E +CGWT +A + A GC R+ + G P P + C ++ V ++ ND GRT+ +L GF + ESC WAA RGD+ ML++ R++D PWDL +G P
Sbjct: 1 MSYIAEFVQ-DQYLFIGPVSKDFRRAWGPRATVTRPVVADTSVKQLRCCLKLDLPLRIRRTSICNAAARFGRLDLLELAQESACGWTPAT---------------YACQLAA-----LGCHARVL----KWLRSPTENWPTGRVAPNACPWDECA---CADAALAGRHDVVEWLRD----NDCPWDGRTA-----ALGGFFDGLQSAFAQXXXXXSESCSWAACRGDLHMLEWLRENDYPWDLAGEGGP 212
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI) HSP 1 Score: 136 bits (343), Expect = 3.720e-30 Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 1 Query: 1129 MSYLAELVDHDQYLLIAPVSKAFRRAWGPRATRTRPVMADTSITQLRYCLKLGLPLGTRRTSICNAAARFGKLGVLELAKEISCGWT 1389
M YLAE VD DQYL IAPVSKAFRRAWGPRAT TRPV+ADTS+ QL YCL+LGLP R+ +ICNAAARFG+L +L+LA+E +CGWT
Sbjct: 1 MWYLAEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQESACGWT 87
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: A0A6H5K3L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.260e-28 Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1 Query: 1129 MSYLAELVDHDQYLLIAPVSKAFRRAWGPRATRTRPVMADTSITQLRYCLKLGLPLGTRRTSICNAAARFGKLGVLELAKEISCGWT 1389
M Y AE VD DQYL IAPV KAFRRAWGPRAT TRPV+ADTS+ QL YCL+LGLP R+ +ICNAAARFG+L +L+LA+ +CGWT
Sbjct: 1 MWYFAEFVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQGSACGWT 87
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: D8LF48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF48_ECTSI) HSP 1 Score: 116 bits (290), Expect = 5.020e-27 Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 1 Query: 124 MGGASEDLCSTSAGGTDIGHQGXXXXXXXXXXXXXXDGPGVPRRRRGLSWMAQTCSTATRSFDWWGAASDPSGTL 348
MGGAS DLCSTSAGGT IGHQGXXXXXXXXXXXXXXDGPGVPRRRRGLSWMAQTCSTATRSFDWWGAASDPS +
Sbjct: 1 MGGASGDLCSTSAGGTGIGHQGXXXXXXXXXXXXXXDGPGVPRRRRGLSWMAQTCSTATRSFDWWGAASDPSDAI 75
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.140e-24 Identity = 114/260 (43.85%), Postives = 127/260 (48.85%), Query Frame = 1 Query: 1 RSWSGCGPSIGTKVTCVPTSFPTLHDTSTSLRHQLHRELGGMGG-ASEDLCSTSAGGTDI--GHQGXXXXXXXXXXXXXX--------------DGPGVPRRRRGLSWMAQTCSTATRSF----DWWGAASDPSG-TLCRGPEWRRRQQQQHRGHENPRAQVSLERDGGHHVIFTAGRGRERGGFRLGSVLLDNPWPFSAAGEWW**WQRGERHGLHRQQQRPRNLDMTTEDPYVRPSLKRAVVELHDTCHRLLSFKMLS 714
RS SGCGPSIGT+V P S P LHD ST+ RHQLHR+ GGMGG A EDL ST+AGGT + G QGXXXXXXXXXXXXXX D PG+ R +S T F G +S SG T RG + + G G GG RLGSVLLD P G GL L TTED YV SLKR++VEL DTCHRLLSFKML+
Sbjct: 13 RSRSGCGPSIGTRVASAPPSSPALHDASTTQRHQLHRKRGGMGGGAPEDLSSTAAGGTGVSLGRQGXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPGLQYRSPAVSTNGVLRPTPQEHFVVDGRGGGNSSSSSGATRIRG------------------CRSASSAMAGMTSSSQQGEDGNGGGHRLGSVLLDTPGHSLQQGSGXXXXXVDGGMGLMGNSSGDEKL--TTEDQYVMASLKRSIVELSDTCHRLLSFKMLN 252
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 8.770e-14 Identity = 66/181 (36.46%), Postives = 78/181 (43.09%), Query Frame = 2 Query: 83 PPPFDTSSTGSWAGWGVHLKTFVPPRRAAPTLVIRAVVAVTRVAXXXXXXTALAYHDDDEGSPGWHRPAVQQPGRS---TGGVLRPTPQEHFVVGRSGGGGNSSNTGATRIRGLRSASSAMAGXXXXXXXXXXXXXXDSGWGPSSSTTPGPSLRQGSGGDDGNVESGMGFIGNSSGHEILT 616
P FD STGSW G G HLKTF+PPRR P +VIRA VA TR A TALA+ W RS +G +RP E G GL+ S + TPGPSL+Q SGG DG+V+ GMG +G +SG E LT
Sbjct: 52 PRHFDGGSTGSWTGRGAHLKTFLPPRRTEPAVVIRAAVAATRTAAVVVALTALAFPRGRRRRLSWMTQTCSVAVRSFPLSGCCVRPLSGEQEWGG-----------------GLQLGSVLL-------------------------DTPGPSLQQRSGGGDGDVDGGMGLMGKTSGDESLT 190
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: D8LF49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF49_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 9.170e-12 Identity = 110/121 (90.91%), Postives = 111/121 (91.74%), Query Frame = 1 Query: 1849 AGAACGGHLEVLKRASRNGCPWDERTRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAAKRGNLLNNILQXXXXXXXXXDSDTARRQPRVSTLEF 2211
AGAACGGHLEVLK ASRNGCPWDERTRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SIAAKRGN L XXXXXXXXX SDTARRQPRV TL+F
Sbjct: 2 AGAACGGHLEVLKWASRNGCPWDERTRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSIAAKRGNPLXXXXXXXXXXXXXX-SDTARRQPRVGTLDF 121
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 6.770e-10 Identity = 78/216 (36.11%), Postives = 93/216 (43.06%), Query Frame = 1 Query: 70 LHDTSTSLRHQLHRELGGMGGASEDLCSTSA-GGTDIGHQGXXXXXXXXXXXXXXDGPGVPRRRRGLSWMAQTCSTATRSFDWWGAASDPSGTLCRGPEWRRRQQQQHRGHENPRAQVSLERDGGHHVIFTAGRGRERGGFRLGSVLLDNPWPFSAAGEWW**WQRGERHGLHRQQQRPRNLDMTTEDPYVRPSLKRAVVELHDTCHRLLSFKMLS 714
LHD S SLRHQLHR+LGGMGG ED S +A GG+ +G++GXXXXXX DGPG T +T D S + G R Q + EN R G + +A G G + TTEDPYVR SLKRA+VEL+DTCHRLLSFKML+
Sbjct: 177 LHDASASLRHQLHRKLGGMGGVPEDFSSAAAAGGSGVGYEGXXXXXXAVG-----DGPGG------------TAATTASLLDDPDLQYSSSPVVSTGGVLRPTPQGED---ENGRG------SSGWGMSSSAPSGPSVGXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXGNATTEDPYVRASLKRAIVELYDTCHRLLSFKMLN 358
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.070e-9 Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 1 Query: 1114 DGQDIMSYLAELVDHDQYLLIAPVSKAFRRAWGPRATRTRPVMADTSITQLRYCLKLGLPLGTRRTSICNAAARFGKLGVLELAKEISCGW 1386
D D++ + V Q+L APVS+A+R AWG R T V D+S++QLRY + GLP R +C A AR G L +L A+ C W
Sbjct: 59 DNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRD--RPELCAAIARLGNLELLRSARGSGCAW 147 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.765.1 >prot_Ecto-sp6_S_contig100.765.1 ID=prot_Ecto-sp6_S_contig100.765.1|Name=mRNA_Ecto-sp6_S_contig100.765.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=143bp MGGASEDLCSTSAGGTDIGHQGGGGGNKSSSRGGGGDGPGVPRRRRGLSWback to top mRNA from alignment at Ecto-sp6_S_contig100:624141..631341+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.765.1 ID=mRNA_Ecto-sp6_S_contig100.765.1|Name=mRNA_Ecto-sp6_S_contig100.765.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7201bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:624141..631341+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:624141..631341+ >mRNA_Ecto-sp6_S_contig100.765.1 ID=mRNA_Ecto-sp6_S_contig100.765.1|Name=mRNA_Ecto-sp6_S_contig100.765.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:624141..631341+ (Ectocarpus species6 EcLAC_371)back to top |