mRNA_Ecto-sp6_S_contig100.760.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI) HSP 1 Score: 644 bits (1661), Expect = 6.840e-222 Identity = 332/417 (79.62%), Postives = 360/417 (86.33%), Query Frame = 1 Query: 1 MMRPSLITFILVSALHVTEASHCSHLLEEKQQEIDHLTAELEVCQAPSXXXXXXXXXXXXXEPPVTSPSDSPFTCDGILNGQACCRHECDSCGGLGCSDRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGEVGTSSPEPTVPAPTPEQATMAPTLEGQAQQQHSTSSGGDVWVPGVGDSWQYNLDTPVNTDVDVDVFFIDLDNAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQQSVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYGICDEANEERLDTIFKEYDLNAAMCSCADSSRDVDCSDVT 1251
MMRPSLITFILV+ALHVTEASHCSHLLEEKQQEIDHLTAELEVC+ PS XXXXXXXXXXXXEPPVTSPSDSPFTCDGILNGQACCRHEC SCGG+GCS+RGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGEVGTSSPEPTVPAPTPEQATMAPTLEGQAQQQHSTSSGGDVWVPGVGDSWQYNLDTPVNTDVDVDVFFIDLD AQDTIDELHGKGKYVSCYISVGTVESWRED G FPSS VG + D GEN++DITQ+SVR++ME RV+KAA CDA+EPDN+S WN++ +G TIS+DEQ++YNKW AE V+E+GM VG+K L+ D S YYDF AY+IPFL + KPVFNVEY DYG CD +N +DTIFK YDL A MCSCA+ SRD DCS VT
Sbjct: 1 MMRPSLITFILVAALHVTEASHCSHLLEEKQQEIDHLTAELEVCRPPSPXXXXXXXXXXXXEPPVTSPSDSPFTCDGILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGEVGTSSPEPTVPAPTPEQATMAPTLEGQAQQQHSTSSGGDVWVPGVGDSWQYNLDTPVNTDVDVDVFFIDLDVAQDTIDELHGKGKYVSCYISVGTVESWREDVGVFPSSVVGTASGDDSGENWIDITQESVREIMEDRVKKAASKGCDAVEPDNISVWNEQDSGFTISKDEQISYNKWVAELVQENGMKVGLKAGHSLIEDTSMYYDFA------------AYQIPFLSEGKPVFNVEYSKDYGGCDGSNALGIDTIFKNYDLKAPMCSCANPSRDHDCSLVT 405
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: A0A6H5KYY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY9_9PHAE) HSP 1 Score: 331 bits (848), Expect = 3.760e-102 Identity = 165/213 (77.46%), Postives = 171/213 (80.28%), Query Frame = 1 Query: 616 NAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQQSVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYGICDEANEERLDTIFKEYDLNAAMCSCADSSRDVDCSDVTR 1254
NAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPS VG+SWDDWQGE FLDITQQSVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTG+TISR+EQVTYNKWFAET AYKIPFLDKDKPVFNVEYDADYG+CDEANEERLDTIFK+Y+LNAAMCSCADSSRDVDCSDVTR
Sbjct: 625 NAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSYVVGSSWDDWQGEKFLDITQQSVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTGVTISREEQVTYNKWFAET---------------------------------------AYKIPFLDKDKPVFNVEYDADYGVCDEANEERLDTIFKDYELNAAMCSCADSSRDVDCSDVTR 798
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: A0A6H5JZ77_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ77_9PHAE) HSP 1 Score: 290 bits (742), Expect = 3.870e-91 Identity = 136/233 (58.37%), Postives = 167/233 (71.67%), Query Frame = 1 Query: 544 SWQYNLDTPVNTDVDVDVFFIDLDNAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQQSVRDLMEARVEKAARMNCDAIEPDNMSNWNQ-EGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYGICDEANEERLDTIFKEYDLNAAMCSCADSSRDVDC 1239
SW YNL TPV+T DVDVFFID+D Q IDELH KGK V CYIS+GTVE WR+DA FPSSA+G W GE ++D+ Q VR++M ARVE A+ MNCDA+EPDNM + + TG+++S EQ+ YN WFA+ V +GM VG+KNA+ELV L + +DF +NE CH WNEC Y+ FL + KPV+NVEY+ +CDEAN LDTI K YDL+AA CSC D SRDVDC
Sbjct: 150 SWNYNLRTPVDTSADVDVFFIDMDAGQGVIDELHDKGKGVVCYISIGTVEDWRDDAKEFPSSAIGGDVSGWAGEKWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYTEGSSTGVSVSEAEQIEYNSWFADIVHAYGMGVGLKNAVELVPILVNKFDFALNEECHEWNECNVYEDTFLAEGKPVYNVEYNLGNSVCDEANALGLDTILKSYDLDAAFCSCVDPSRDVDC 382
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: D7FRL1_ECTSI (Glyco_hydro_114 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL1_ECTSI) HSP 1 Score: 210 bits (534), Expect = 5.680e-64 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1 Query: 964 MHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYGICDEANEERLDTIFKEYDLNAAMCSCADSSRDVDCSDVTR 1254
MHVGMKNAIEL+GDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYGICDEANEERLDTIFKEYDLNAAMCSCADSSRDVDCSDVTR
Sbjct: 1 MHVGMKNAIELLGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYGICDEANEERLDTIFKEYDLNAAMCSCADSSRDVDCSDVTR 97
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: UPI001656DE63 (endo alpha-1,4 polygalactosaminidase n=1 Tax=Nitrosophilus labii TaxID=2706014 RepID=UPI001656DE63) HSP 1 Score: 192 bits (489), Expect = 6.810e-55 Identity = 97/236 (41.10%), Postives = 144/236 (61.02%), Query Frame = 1 Query: 517 DVWVPGVGDSWQYNLDTPVNTDVDVDVFFIDL-DNAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQQSVRDLMEARVEKAARMNCDAIEPDNMSNW-NQEGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYGI--------CDEANEERLDTIFKEYDLN 1194
D + P V +W + L +N D +V+++ IDL D +++ I+ LH +GK V CY S G+ E+WREDA FP A+GN D W+GE +LDI +VR++M+ R++ A CD +EPDN+ ++ N G GLT ++Q+ YNK+ A+ G+ +G+KN + + DL DY+DF +NE CH +NEC + PF+ K KPVFNVEY Y I C +A +E T+ DL+
Sbjct: 29 DWYRPDVNTTWHWQLQGTINLDYNVELYDIDLFDTSEEIIETLHNQGKKVICYFSAGSYENWREDAYKFPKEAIGNDLDGWEGEKWLDIRNSTVREIMQERLDIAKNKGCDGVEPDNVDSYINNTGFGLTY--EDQLEYNKFLAQEAHLRGLSIGLKNDLMQINDLVDYFDFALNEQCHEFNEC-EFLTPFIQKGKPVFNVEYAQIYVIDEQERAKLCQKARDENFRTLILPKDLD 261
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: D4H7N2_DENA2 (TM1410 hypothetical-related protein n=1 Tax=Denitrovibrio acetiphilus (strain DSM 12809 / NBRC 114555 / N2460) TaxID=522772 RepID=D4H7N2_DENA2) HSP 1 Score: 187 bits (476), Expect = 4.510e-53 Identity = 92/241 (38.17%), Postives = 148/241 (61.41%), Query Frame = 1 Query: 499 STSSGGDVWVPGVGDSWQYNLDTPVNTDVDVDVFFIDL-DNAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQQ-SVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYG-ICDEANEERLDTIFKEYDLNAAMCSC 1212
S ++ G++W P G +WQ L +NT DV V+ IDL D + ID+LH +G V CY S G+ E+WR DA FP + +G D W+GE++LDI ++ +M+AR++ AA CDA++PDN+ + + TG ++ +Q+ YNK A++ E G+ VG+KN I+ + DL D++DF +NE C ++ECG+ +PF++ +K VF +EY+ + CD++ T+ + L+ M SC
Sbjct: 22 SGTAAGEIWQPEPGATWQIQLQGELNTSYDVQVYDIDLYDTPKAVIDDLHSRGVKVICYFSAGSYENWRSDASEFPEAVIGKDLDGWEGESWLDIRNTLTLMPIMDARMDIAAAKGCDAVDPDNVDGYAND-TGFPLTASDQLIYNKMLADSAHERGLAVGLKNDIDQIDDLVDFFDFAVNEQCFYYDECGSL-LPFINTNKAVFGIEYELEPDEFCDKSIVYGFSTLLMDQALDGDMYSC 260
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: A0A4R3HPG2_9GAMM (Glyco_hydro_114 domain-containing protein n=1 Tax=Reinekea marinisedimentorum TaxID=230495 RepID=A0A4R3HPG2_9GAMM) HSP 1 Score: 189 bits (480), Expect = 7.350e-53 Identity = 96/213 (45.07%), Postives = 133/213 (62.44%), Query Frame = 1 Query: 523 WVPGVGDSWQYNLDTPVNTDVDVDVFFIDL-DNAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQQSVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEY-DADYGICDEANE 1155
+ P V +WQ+ + VNTD DVDV+ IDL D I+EL GK V CY S G+ E WRED FP A+G D W GEN+LDIT ++VR +M AR++ AA CD +EPDN+ ++ + TG +S D+Q+ YN + AE E G+ V +KN +E V DL DY+DF INE C ++EC + PF+++ KPVF+ Y D + + D+A E
Sbjct: 88 YQPEVSTTWQWQISGTVNTDYDVDVYDIDLFDTHTSVIEELQADGKAVICYFSAGSYEDWREDEADFPEEALGKDLDGWDGENWLDITNETVRKIMAARMDLAAEKGCDGVEPDNVDGYSNK-TGFDLSYDDQLDYNIFLAEAAHERGLAVALKNDVEQVDDLVDYFDFSINEECFEYDECETLE-PFIEQGKPVFHTSYVDEESELSDKAGE 298
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: A0A3N1PKH9_9GAMM (Glyco_hydro_114 domain-containing protein n=2 Tax=Gallaecimonas pentaromativorans TaxID=584787 RepID=A0A3N1PKH9_9GAMM) HSP 1 Score: 187 bits (474), Expect = 2.060e-52 Identity = 102/245 (41.63%), Postives = 139/245 (56.73%), Query Frame = 1 Query: 514 GDVWVPGVGDSWQYNLDTPVNTDVDVDVFFIDL-DNAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQQSVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADY--------GICDEANEERLDTIFKEYDLNAAM-CSCAD 1218
GD + P VGD WQ L VNT DV ++ IDL D++ I +LH +G V CY S GT E WREDA F + G D W GE +LDIT +V+ +M+AR+E A CD ++PDN+ + Q TG + ++Q+ YN+W A + E G+ VG+KN + V DL DY DF INE C + EC Y PF++ +KPVFN+EY++ Y +C +A L T+ LN SC D
Sbjct: 48 GDWYQPQVGDDWQIQLTGTVNTSYDVALYDIDLFDSSTALIQQLHQQGARVICYFSAGTFEDWREDASQFATDDYGYEVDGWPGEYWLDITSSTVQAVMQARLELAQTKGCDGVDPDNVDGY-QHSTGFNLGYNDQLQYNRWLANSAHELGLSVGLKNDLNQVTDLVDYMDFAINEQCFNYGECD-YLTPFVNANKPVFNIEYNSQYVSDASARSELCQQAASAGLSTLVLPKKLNGNFRYSCQD 290
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: A0A0F7FWD9_9ACTN (Endo alpha-1,4 polygalactosaminidase n=2 Tax=Streptomyces TaxID=1883 RepID=A0A0F7FWD9_9ACTN) HSP 1 Score: 183 bits (465), Expect = 3.390e-51 Identity = 96/240 (40.00%), Postives = 141/240 (58.75%), Query Frame = 1 Query: 502 TSSGGDVWVPGVGDSWQYNLDTPVNTDVDVDVFFID-LDNAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQ-QSVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYD-ADYGICDEANEERLDTIFKEYDLNAAMCSC 1212
T++ + W P G WQ+ L V+T VDV V+ ID DN+ +D LH +G+ V CYISVG+ E WR DAG FP S +GN D+W+GE +LD+ Q ++R LM AR + A DA+EPDNM + + G +++++QV YN +E E G+ VG+KN ++ V +L D +DF +NE C + ECG PF++ K VF+VEY+ C ++ K +DL+A +C
Sbjct: 44 TAAEREFWTPEPGTDWQWQLIGTVDTSVDVPVYDIDGFDNSAAVVDTLHSEGRKVICYISVGSWEDWRPDAGDFPDSVIGNPLDEWEGEQWLDVRQLDTLRPLMAARFDMCADKGFDAVEPDNMDGYIND-PGFPLTKEDQVAYNLMISELAHERGLSVGLKNGVDQVPELVDAFDFAVNEECAYYKECGKVS-PFIEAGKAVFHVEYEMTTEEFCPVTQPLGFSSLQKNWDLDAWRATC 281
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Match: A0A2H0S882_9BACT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_19 TaxID=1974784 RepID=A0A2H0S882_9BACT) HSP 1 Score: 180 bits (456), Expect = 6.980e-50 Identity = 91/235 (38.72%), Postives = 136/235 (57.87%), Query Frame = 1 Query: 517 DVWVPGVGDSWQYNLDTPVNTDVDVDVFFIDLDN-AQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQ-QSVRDLMEARVEKAARMNCDAIEPDNMSNWNQEGTGLTISRDEQVTYNKWFAETVREHGMHVGMKNAIELVGDLSDYYDFGINESCHVWNECGAYKIPFLDKDKPVFNVEYDADYG-ICDEANEERLDTIFKEYDLNAAMCSC 1212
+++ P G SW + LD +NT+ DV+++ IDL+ +Q TIDELH GK V CY S GT E +R DA F +G D W GE +LDI +S +ME+R++ A + CD +E DN+ + + +G ++ D Q+ YNKW AE + + + +KN ++ + DL +Y+DF INE C +NEC PF+ ++K V VEY+ D C++AN + YDLN SC
Sbjct: 47 NLYTPKPGTSWHWQLDGKINTNYDVEIYNIDLEETSQKTIDELHSNGKKVICYFSAGTYEKFRSDAKKFQKKVLGKKLDGWAGEKWLDIANYESFSHIMESRLDLAVKKQCDGVEADNVDAYTNK-SGFKLNYDHQLRYNKWLAEEAHKRNLSIALKNNLDQIPDLVNYFDFAINEQCFEYNECDKLT-PFIKQNKAVLGVEYELDKSEFCEQANRFNFSWLKANYDLNKNTDSC 279 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.760.1 >prot_Ecto-sp6_S_contig100.760.1 ID=prot_Ecto-sp6_S_contig100.760.1|Name=mRNA_Ecto-sp6_S_contig100.760.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=419bp MMRPSLITFILVSALHVTEASHCSHLLEEKQQEIDHLTAELEVCQAPSPTback to top mRNA from alignment at Ecto-sp6_S_contig100:565727..578078+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.760.1 ID=mRNA_Ecto-sp6_S_contig100.760.1|Name=mRNA_Ecto-sp6_S_contig100.760.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=12352bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:565727..578078+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:565727..578078+ >mRNA_Ecto-sp6_S_contig100.760.1 ID=mRNA_Ecto-sp6_S_contig100.760.1|Name=mRNA_Ecto-sp6_S_contig100.760.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:565727..578078+ (Ectocarpus species6 EcLAC_371)back to top |