mRNA_Ecto-sp6_S_contig100.753.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: D7FRL9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL9_ECTSI) HSP 1 Score: 495 bits (1275), Expect = 3.410e-171 Identity = 273/347 (78.67%), Postives = 281/347 (80.98%), Query Frame = 1 Query: 1 VWVFVRCRRDRAISHGGGTVSCGELTTPLNADYRLRTPQALAVLLPCTPTCLQSPLPPPSSPRHKKSAPVCASASR---------AGSTLRRSWRSQVK*TMPPFAHRAAATAALLLCPLSSAFVPALPSPHERRPAAVGRGLVAATTPAVAQTTSRACSTRPRAKRGLHATELGAAADRGGGGEECGDEGKGGEEKPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKVQNGSSSHFDNWADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQDLLRQTSAEVMRKYRVEHPDYFREEVERQFK 1014
+WV VRCR DRAIS G N DYRLR PQAL P S PPP P +K+A +C AG R R TMPPFAHRAAATAALLLCPLSSAFVPALPSPHERRP+AVGRGLVA +TP VAQTTS ACSTRPRAKRGLHATELGAAADRGGGGEECGDEGKGGE KPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAA+VQNGSSSHF+N ADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQDLLRQTSAEVMRKYRVEHPDYFREEVERQFK
Sbjct: 4 LWVVVRCRCDRAIS--------GLSAAHFNPDYRLRIPQALH--FPAHRPA--SSRPPPHLPLGRKTAFLCVQVHHVLAVPYGEAAGVKSRLVTR-----TMPPFAHRAAATAALLLCPLSSAFVPALPSPHERRPSAVGRGLVATSTPVVAQTTSPACSTRPRAKRGLHATELGAAADRGGGGEECGDEGKGGEGKPPRSVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAARVQNGSSSHFENSADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQDLLRQTSAEVMRKYRVEHPDYFREEVERQFK 333
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A836CQ20_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ20_9STRA) HSP 1 Score: 109 bits (272), Expect = 3.400e-24 Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 1 Query: 583 ERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKVQNGSSSHFDNW------------ADRIPEDGAPD-GFVLTCSTHPTGPGVKLDLSANAEMWDA-YCARLDDISTQDLLRQTSAEVMRKYRVEHPDYFREEVERQF 1011
E+ W+V + HGE + ++P D+IL+AAE++G+ Y+CRRGNC++CA + + SS + +D D A D GF L+C ++P GPG++++L E W YC RL D +T+ + A+V R Y +PD F ++ERQF
Sbjct: 8 EKTWEVTFELHGEETTVLMRPDDTILQAAELAGLRAPYDCRRGNCLTCAGRFKAASSYNLVTTLRQEAGGAVTLDSDTFLCDEAKDEGFFLSCCSYPVGPGLRVELGVQKEAWQIQYCDRLRDEATRAAALEAVAQVQRGYSERNPDKFVADLERQF 164
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A0G4EXA3_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXA3_VITBC) HSP 1 Score: 72.8 bits (177), Expect = 8.390e-12 Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 586 RPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKVQNGS--SSHFDNWADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLD 906
R W +E+++ G+ + V G S+LEAAE + +CR G C SCA ++ G ++ N D + E G+VLTC T+ GPG+K++L+ N E++ R +
Sbjct: 18 RSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVIN-RDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A7S4F9M2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9M2_CHRCT) HSP 1 Score: 73.6 bits (179), Expect = 1.010e-11 Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 574 SVLERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKVQNGSSSHF---DNWADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWD 885
+V++R W V V + V+ V G +L A E +G+ +CRRGNC+SCAA++ NG+ DN A + + GFVL CS + G G+++++ E+W+
Sbjct: 17 AVVKRAWPVTVHIGRQAHVLRVPEGQPVLLALEAAGLLPGSDCRRGNCLSCAARIINGAPFSLRVRDNTA--LCSEAHESGFVLLCSAYVCGKGLEIEVDMEGEVWE 121
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A0G4EFE2_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFE2_VITBC) HSP 1 Score: 72.8 bits (177), Expect = 2.140e-11 Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 1 Query: 598 VEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKVQNGSSSH-FDNWADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARL 903
V+V +G+ +TV PGDSILEAAE +G+ L ++CR G C+ C AKV +GS H D + E G + L C P V +++ E+ D A +
Sbjct: 68 VKVSINGDTYDVTVNPGDSILEAAEEAGLELPHDCRLGTCLQCTAKVVSGSVDHGMGTLDDEVTEAG----YTLACQATPLSDDVHIEIVEEDEVIDKQFANM 166
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A7S2YSW2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSW2_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 6.160e-11 Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 1 Query: 631 ITVQPGDSILEAAEM-------SGMNLS--YECRRGNCISCAAKVQNGSSSHFDNWADRIPEDGAP--------DGFVLTCSTHPTGPGVKLDLSANAEMWD-AYCARLDDISTQDLLRQTSAEVMR 957
+ V PG++IL A E SG N+ ++CRRGNC++C+A Q+ S S N D +P G+VLTCS+ TGPGV L L AN ++WD Y RL+ T+ R A+ +R
Sbjct: 109 VPVYPGETILAALERLASSGGTSGANIPPPFDCRRGNCLTCSA--QHTSESAATNLIDTTDNGLSPYVAKTIAERGYVLTCSSTVTGPGVSLTLGANNQLWDYVYRGRLESEETESAARAAMAKAIR 233
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A4D9D796_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D796_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.740e-10 Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 592 WDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKVQNGSSSHFDNWADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQD 924
WDV++ + GE +V+TV ILEAAE ++ CR G C +CA +V S + + + + +GFVLTC THP GPG++++L ++++ + + +T +
Sbjct: 55 WDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKEA-IHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTE 163
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A6V1VDI3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VDI3_HETAK) HSP 1 Score: 69.3 bits (168), Expect = 3.490e-10 Identity = 31/112 (27.68%), Postives = 59/112 (52.68%), Query Frame = 1 Query: 592 WDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKVQNGSSS-HFDNWADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQD 924
W++E+ G +++TV D +LEAAE + + CR G C +C+ ++ G ++ + E GF ++C TH TGPGVK++L+ +++ + + + +D
Sbjct: 50 WEIELTLDGVTKMVTVSEADCVLEAAEKVFDDPPFSCRNGVCTTCSCRIVEGKEGENYKLAVHGLGETALSQGFTMSCQTHVTGPGVKIELNQYDTVYEMQYGQYEKGTAKD 161
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A0M0K3H8_9EUKA (Ferredoxin (2fe-2s) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3H8_9EUKA) HSP 1 Score: 71.6 bits (174), Expect = 1.630e-9 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 568 PRSVLERPWDVE-VDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAAKVQNGSSSHFDNWADR-IPEDGAPDGFVLTCSTHPTGPGVKLDLSANAE 876
P S R WDV V +R ++V S+L AAE++G+ +CRRG C+SCAA+V +GS +D + ++ +G VL CS +P GP ++L L A +
Sbjct: 417 PSSNPSRVWDVTLVSADEQRHTLSVAENQSVLRAAELAGLLPCSDCRRGRCLSCAARVVSGSKFSLAVDSDTALCDEAHVEGIVLLCSAYPRGPNLELKLDAEGD 521
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Match: A0A7R9YXN5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YXN5_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.720e-9 Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1 Query: 694 YECRRGNCISCAAKVQNGSSSHF-----DNWADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMW-DAYCARLDDISTQDLLRQTSAEVMR 957
+ECRRGNC++CA + GS++ D + + E+ G+VLTCS++ G GVKLDL +N++ W D + +RL T+ A++MR
Sbjct: 9 FECRRGNCLTCAGRHAEGSATSNLRRGEDGLSPYLSEEVRGLGYVLTCSSYVEGDGVKLDLGSNSDAWEDVHTSRLQSPETERTGLAAQAKLMR 102 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.753.1 >prot_Ecto-sp6_S_contig100.753.1 ID=prot_Ecto-sp6_S_contig100.753.1|Name=mRNA_Ecto-sp6_S_contig100.753.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=247bp MPPFAHRAAATAALLLCPLSSAFVPALPSPHERRPAAVGRGLVAATTPAVback to top mRNA from alignment at Ecto-sp6_S_contig100:511775..517356- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.753.1 ID=mRNA_Ecto-sp6_S_contig100.753.1|Name=mRNA_Ecto-sp6_S_contig100.753.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5582bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:511775..517356- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:511775..517356- >mRNA_Ecto-sp6_S_contig100.753.1 ID=mRNA_Ecto-sp6_S_contig100.753.1|Name=mRNA_Ecto-sp6_S_contig100.753.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:511775..517356- (Ectocarpus species6 EcLAC_371)back to top |