mRNA_Ecto-sp6_S_contig100.731.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: D7G943_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G943_ECTSI) HSP 1 Score: 547 bits (1409), Expect = 3.320e-193 Identity = 323/367 (88.01%), Postives = 328/367 (89.37%), Query Frame = 1 Query: 1 QDTRCGKSSIDGGGGIGGGINFIGADGAVLDKLPSGMEAVMDPDAICSLDYSLASLTSLSPPPGEGQGQQDGGGSWQPRSSTADDGRLPTATSTAGTTGAAIARTTKAXXXAAGPKRARAEAGRASSEKIASSGPSRHNRGSRDRDDDTTGRSGGVEAGETSGRGAAGYGHPSMAAKARGGKKRRKRGDDAGDXXXXXXXXXXXXXXXXXKATAGEIEDANENPKQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLDTSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCVCPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRK 1101 Q+TRCGKSSIDGGGGIGGGINFIGADGAVLDKLPSGMEAVMDPDAICSLDYSLASLTSLSPPPGEGQGQQDGGGSWQPR XXX GPK+ARAEAGRASSEKIASSGP+RHNRGSRDRDDDTTGRSGGVEAGETSGRGAA YGHPSMAAKARGGKKRRKRGDDAGDXXXXXXXXXXXXXXX K GE+EDA ENPKQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQL+TSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCV PITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRK Sbjct: 5 QETRCGKSSIDGGGGIGGGINFIGADGAVLDKLPSGMEAVMDPDAICSLDYSLASLTSLSPPPGEGQGQQDGGGSWQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKQARAEAGRASSEKIASSGPNRHNRGSRDRDDDTTGRSGGVEAGETSGRGAAEYGHPSMAAKARGGKKRRKRGDDAGDXXXXXXXXXXXXXXXGGKTAGGEVEDAKENPKQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLETSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCVYPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRK 371
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: A0A6H5KUH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH5_9PHAE) HSP 1 Score: 551 bits (1419), Expect = 2.160e-191 Identity = 326/387 (84.24%), Postives = 336/387 (86.82%), Query Frame = 1 Query: 1 QDTRCGKSSIDGGGGIGGGINFIGADGAVLDKLPSGMEAVMDPDAICSLDYSLASLTSLSPPPGEGQGQQDGGGSWQPRSSTADDGRLPTATSTAGTTGAAIARTTKAXXXAAGPKRARA--EAGRASSEKIASSGPSRHNRGSRDRDDDTTGRSGGVEAGETSGRGAAGYGHPSMAAKARGGKKRRKRGDDAGDXXXXXXXXXXXXXXXXXKATAGEIEDANENPKQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLDTSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCVCPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSDA 1155 Q+TR GKSSIDGGGGIGGGI+FIGADG+VLDKLPSGMEAVMDPDAICSLDYSLASLTSLSPP GEGQ QQDGGGSWQPRSSTAD XXX EAGRASSE+IASSGP+RHNR SRDRDDDTTGRSGGVEAGETSGRGAAG GH SMAAKARGGKKRRKR DDAGDXXXXXXXXXXX KA GE+EDANENPKQRANRVRNREHARNTR+RKKQYVESLKLQVGEMLQAKAQEERDAQL+TS +SAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCVCPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGS+A Sbjct: 5 QETRYGKSSIDGGGGIGGGISFIGADGSVLDKLPSGMEAVMDPDAICSLDYSLASLTSLSPPLGEGQYQQDGGGSWQPRSSTADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGRASSERIASSGPNRHNRESRDRDDDTTGRSGGVEAGETSGRGAAGCGHHSMAAKARGGKKRRKRADDAGDXXXXXXXXXXXFDGKGGKAAGGEVEDANENPKQRANRVRNREHARNTRMRKKQYVESLKLQVGEMLQAKAQEERDAQLETSKISAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCVCPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSNA 391
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: A0A836CN81_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN81_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.650e-22 Identity = 66/161 (40.99%), Postives = 97/161 (60.25%), Query Frame = 1 Query: 673 KQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLDTSNMSAKRTAMRQMVLNI-LYLKATEELSPRSWACVLDDGFTCVCPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSD 1152 K A+R RNR+HARNTR+RKK Y+E L+ V + L A+ A+ +A+ ++R VL + L+ +A WA L++ FTCV PITP+RSFP +E R+I GI+ MI D ASLA+ ++S+ R R P+ R+++ Q+Y PED + D Sbjct: 113 KAEASRDRNRKHARNTRLRKKAYIEELERTV-QQLTAERDAAAAAKAAEGARAAQLQSVRFSVLQMALFYRAAGNTCRADWATALEESFTCVLPITPYRSFPSAEVVSGQRMIVGIDAMIADVASLALMVESV-GRCR-PSERRVQVQYYAGPEDAITSGD 270
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: D7G007_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G007_ECTSI) HSP 1 Score: 107 bits (267), Expect = 5.100e-22 Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 1 Query: 685 NRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLDTSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCVCPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSR 1083 NR RNREHARNTR+RKK +VE LK QV E++ + +EE D + + +++ R Q++L L + EL + W VLD+ F PITP+RSFPP + Q R+I G++G+I DT SL+V K P R Sbjct: 47 NRDRNREHARNTRLRKKAFVEELKKQVEELVSGREREEMDQRAEARRVASLREIRLQVLLTFLEYRGRCELGRKEWQSVLDEQFEMQMPITPYRSFPPQQVQGGKRVIKGLDGVIADTLSLSVATKGPSPSGR 179
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: A0A7S1D1F4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1F4_CYCTE) HSP 1 Score: 106 bits (265), Expect = 1.050e-21 Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 1 Query: 646 EIEDANENPKQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLD-----TSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDG-FTCVCPITPFRSFPPSEAQED--HRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSD 1152 +++D K +ANR RNREHARNTR+RKK Y+E LK V E+ + ERD + S M +++++ L++T E W+ +LD+ F+CV P+TP+RSFP SE Q R I GI+GMI DTASL V + S+ RSR P +++++ ED VV + Sbjct: 5 DLQDMTPEEKVKANRDRNREHARNTRLRKKAYLEKLKSTVDELCR-----ERDTLVSERAGAASLMVEIHNTRTEVLMSFFALRSTYEKQRDLWSSILDESCFSCVMPVTPYRSFPASEVQVSKCQRTILGIDGMISDTASLHVLLNSLIDRSRYPAA-SIQFRYTLVTEDAVVAGN 175
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.130e-21 Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 1 Query: 685 NRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLDTSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCVCPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKL 1104 NR RNREHARNTR+RKK +VE LK QV E++ + +EE D + + +++ R Q++L L + EL + W VLD+ F PITP+RSFPP + Q R+I G++G+I DT SL+V K P R +L Sbjct: 268 NRDRNREHARNTRLRKKAFVEELKKQVEELVSGREREEMDRRAEERRVASLREIRLQVLLTFLEYRGRCELGRKEWQSVLDEQFEMQMPITPYRSFPPQQVQGGKRVIKGLDGVIADTLSLSVATKGPSPSGRQSRPEEL 407
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: B7GCQ4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GCQ4_PHATC) HSP 1 Score: 107 bits (266), Expect = 1.930e-21 Identity = 65/163 (39.88%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 673 KQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLDTSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDG-FTCVCPITPFRSFPPSEAQED--HRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSD 1152 K RANR RNREHA+NTR+RKK ++E LK V ++ Q + + S M +++++ L++T E WA +LD+ FTC P+TP+RSFP SE Q R I GI+GMI DTAS+ V SI R + P G K+++++ E+ VV + Sbjct: 432 KARANRDRNREHAKNTRMRKKAFLEELKTTVDDLCQERDTLVSERTCAASVMVEMHNTRTEVLMSFFALRSTNEKRRELWASILDESCFTCAVPVTPYRSFPASEVQASKCQRTILGIDGMIADTASINVLFDSIVDRKKYPEG-KIEFRYTLVTEEAVVAGN 593
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: A0A1E7FCK8_9STRA (BZIP domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCK8_9STRA) HSP 1 Score: 106 bits (264), Expect = 3.150e-21 Identity = 71/177 (40.11%), Postives = 104/177 (58.76%), Query Frame = 1 Query: 646 EIEDANENP--KQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAK---AQEERDAQLDTSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDG-FTCVCPITPFRSFPPSEAQED--HRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSD 1152 EI+ +N P +QRANR RNREHARNTR+RKK Y+E+LK V E+ Q + E A M+ RT +++++ L++ E + WA +LD+ F C+ P+TP+RSFP SE Q R I GI+GM+ DTASL V + ++ RSR P + +++ E+ VV + Sbjct: 192 EIDMSNMTPEERQRANRDRNREHARNTRLRKKAYLETLKCTVNELCQERDTLVTERAGAASILVEMNNTRT---EVLMSFFALRSANEKRRQLWASILDESSFACILPVTPYRSFPASEVQVSKCQRTILGIDGMMSDTASLHVLLNTLVDRSRFPNA-SIAFRYTLVTEEAVVAGN 364
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: A0A6T9YEN6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A6T9YEN6_9STRA) HSP 1 Score: 106 bits (264), Expect = 3.680e-21 Identity = 68/166 (40.96%), Postives = 100/166 (60.24%), Query Frame = 1 Query: 673 KQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAK---AQEERDAQLDTSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDG-FTCVCPITPFRSFPPSEAQED--HRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSD 1152 +Q+ANR RNREHARNTR+RKK Y+E+LK V ++ Q + E A M+ RT +++++ L++ E WA +LD+ FTCV P+TP+RSFP SE Q R I GI+GM+ DTASL V + ++ RSR PT +++++ E+ VV + Sbjct: 430 RQKANRDRNREHARNTRLRKKAYLETLKSTVNDLCQERDTLVTERAGAASILVEMNNTRT---EVLMSFFALRSANEKRRPLWASILDESSFTCVLPVTPYRSFPASEVQVSKCQRTILGIDGMMSDTASLHVLLNTLVDRSRFPTAA-IQFRYTLVTEEAVVAGN 591
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Match: A0A7S2A2E8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A2E8_9STRA) HSP 1 Score: 102 bits (253), Expect = 9.240e-20 Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 1 Query: 634 ATAGEIEDANENPKQRANRVRNREHARNTRIRKKQYVESLKLQVGEMLQAKAQEERDAQLD-----TSNMSAKRTAMRQMVLNILYLKATEELSPRSWACVLDDG-FTCVCPITPFRSFPPSEAQED--HRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSD 1152 + A +D K +ANR RNREHARNTR+RKK Y+E LK+ V E+ + ERD + S + + ++++ L++ E WA +LD+ F CV P+TP+RSFP SE Q R I GI+GM+ DTASL V + S+ RS+ P +++++ ED+VV + Sbjct: 208 SAASNTDDMTPEEKLKANRDRNREHARNTRLRKKAYLEKLKVTVDELCR-----ERDTLVSERVGAASLLIEMHSTRIDVLMSFFALRSACERRRELWASILDESCFACVMPVTPYRSFPSSEVQVSKCQRTILGIDGMMSDTASLHVLLNSLVDRSKYPNAT-VQFRYTLVTEDSVVAGN 382 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.731.1 >prot_Ecto-sp6_S_contig100.731.1 ID=prot_Ecto-sp6_S_contig100.731.1|Name=mRNA_Ecto-sp6_S_contig100.731.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=385bp QDTRCGKSSIDGGGGIGGGINFIGADGAVLDKLPSGMEAVMDPDAICSLDback to top mRNA from alignment at Ecto-sp6_S_contig100:343446..347114+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.731.1 ID=mRNA_Ecto-sp6_S_contig100.731.1|Name=mRNA_Ecto-sp6_S_contig100.731.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3669bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:343446..347114+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:343446..347114+ >mRNA_Ecto-sp6_S_contig100.731.1 ID=mRNA_Ecto-sp6_S_contig100.731.1|Name=mRNA_Ecto-sp6_S_contig100.731.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1155bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:343446..347114+ (Ectocarpus species6 EcLAC_371)back to top |