mRNA_Ecto-sp6_S_contig100.722.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: D7FKF4_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKF4_ECTSI) HSP 1 Score: 386 bits (991), Expect = 1.280e-134 Identity = 198/200 (99.00%), Postives = 198/200 (99.00%), Query Frame = 1 Query: 1 MGDDYSGPCSCLLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQKSVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS 600 MGD YSGPCSCLLNCVRSWRERDRLRRHTE LRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQKSVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS Sbjct: 1 MGDGYSGPCSCLLNCVRSWRERDRLRRHTELLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQKSVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS 200
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: A0A835ZIX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIX0_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.790e-37 Identity = 82/218 (37.61%), Postives = 127/218 (58.26%), Query Frame = 1 Query: 1 MGDDYSGPCSCLLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRK-----KSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGS-------------VRDSWVESLQAVAEDVRLNPQARMAQKSVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS 600 M SG C CL W + R+ + G + +++ FGFG+ + VRL +TVL W++ ++ G + W +IDL D+K V+ +G L + S+ GDLLLE++ ++G+ RD+W +L + ED+R NPQ A +SV +R+K+ A +Q+H A+R+IE+Q K+DAEARKAR++ E GG++YTA+AMANRS Sbjct: 1 MEQFLSGLCPCLSKLFDGWAADAQKRQDKAMMVAGTVCTKKSSRFGFGSRSDKVTVRLSAQSETVLQWQRAAADEEAGGGGEAAWTDIDLTDVKIVDKRGETGLALVSRRGDLLLEVDMDSGTGXXXXXXXXXXXAQRDAWHAALTDLTEDLRRNPQRAEASRSVAERVKEAALKQKHFAQRSIELQAAKRDAEARKARFMAEAGGLKYTAMAMANRS 218
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: A0A7S2SSX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSX7_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.320e-30 Identity = 77/188 (40.96%), Postives = 111/188 (59.04%), Query Frame = 1 Query: 34 LLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQKSVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANR 597 L C S RDR R+ E L +G F+R+ TFGFG G E +++K T++ + EG EI L D+++VEPKG L + SKTGDLLLE+EA +G RD WV ++ AE L + + + M+D+A +Q + KR +E+ K+ AE RKA+ +KE+GG++YTALAMA+R Sbjct: 8 LCGCCASQEARDRQERN-EVLSKGARFRRKKLTFGFGMGWEDVTMKVKESTATLMWFTSVQEGSNS---GEIRLRDVRSVEPKGEIGLTVHSKTGDLLLEVEAVDGQTRDYWVPAIAMAAE---LPVKGPLPDRPQTSSMRDRAAKQAYFMKRDLELTAKKQLAEQRKAKLMKESGGLKYTALAMASR 188
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: W4HBN3_9STRA (PH domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4HBN3_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.210e-29 Identity = 81/203 (39.90%), Postives = 118/203 (58.13%), Query Frame = 1 Query: 19 GPCSCLLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQK-------SVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETG--GMQYTALAMANRS 600 G +C C ++ RE D +FL+ G F R+ +TFG TG ES ++L D D +L W + D K +EI++ DIK+V P G+A + S G++LLEL+AE+ VR WV +LQ + E+VR + QK S+K +KDQA +Q + KR EM+Q +K+AE RK K+ G GM++TA+AMANR+ Sbjct: 2 GNLNCFEQC-QAIREHDE---RAKFLQAGGAFTRKKYTFGLHTGTESVHLQLHADSDEILLWTSDKQADGAKP-NEIEVGDIKSVLPSGTAGFQIYSMQGEVLLELDAESAEVRSEWVTALQWICEEVRRTQELNGTQKKHPASASSLKQMVKDQANKQAYWMKRQTEMKQREKEAEERK----KKVGAVGMKFTAMAMANRT 195
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: A0A1V9ZP44_9STRA (PH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZP44_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.570e-28 Identity = 80/198 (40.40%), Postives = 116/198 (58.59%), Query Frame = 1 Query: 37 LNCVRSWRERDRLRRHTE---FLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQK-------SVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS 600 LNC+ + +R H E FLR+G +FKR+ +TFG TG E+ ++L D VL W +S G K +EI++ IK V P+G +S + S GD+LLEL+AE+ +R WV +LQ V E+V+ +A K S+K +KDQA +Q + KR E++Q + +AE RK + GM+YTA+AMANRS Sbjct: 4 LNCLEQCQA---IREHDERLTFLREGGVFKRKKYTFGLHTGTEAIHLQLHEASDEVLLWTAESSGAKP---NEIEVGGIKAVLPQGPSSFQLLSMQGDVLLELDAESAELRTQWVTALQFVCEEVQKEQEANGTTKKAPVTPSSLKQMVKDQANKQAYWHKRQQELKQREAEAEERKKKV--GVAGMKYTAIAMANRS 193
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: A0A1W0A206_9STRA (PH domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A206_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.410e-27 Identity = 77/201 (38.31%), Postives = 115/201 (57.21%), Query Frame = 1 Query: 19 GPCSCLLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQK-------SVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS 600 G +CL C ++ RE D FL++G +F+R+ +TFG TG E+ ++L + D +L W +S G K +EI++ IK + P G+ + S GD+LLELEAE +R WV +LQ V E+V+ + QK S+K +KDQA +Q + KR E++ +K+AE RK + GM+YTA+AMANRS Sbjct: 2 GNLNCLEQC-QATREHDA---RVTFLQEGGVFQRKKYTFGLHTGSEAIHLQLHQESDEILLWTTESGGTKP---NEIEVGGIKAILPHGNTGFQILSMQGDVLLELEAETAEMRTQWVTALQFVCEEVQKEQERNGTQKKAPVTPTSLKQMVKDQANKQAYWHKRQQELKAREKEAEERKKKI--GASGMKYTAIAMANRS 193
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: A0A6G0XQB8_9STRA (PH domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQB8_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.760e-27 Identity = 77/199 (38.69%), Postives = 114/199 (57.29%), Query Frame = 1 Query: 19 GPCSCLLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQK-----SVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS 600 G +CL C ++ RE D +FL+ G +F R+ +TFG T ES ++L D D +L W + D K +EI++ IK+V P G + S G++LLELEAE +R WV +LQ + E+VR N + K S+K +K+QA +Q + KR E++Q +K+AE RK + T GM+YTA+AMANR+ Sbjct: 2 GNLNCLEQC-QAIREHDE---RAKFLQAGGVFSRKKYTFGLHTSTESIHLQLHADSDEILLWTSDKQPDDAKP-NEIEVGSIKSVLPSGPTGFQIYSMQGEVLLELEAETAEMRSEWVTALQWICEEVRKNQEINGTAKHPVSSSLKQMVKEQANKQAYWMKRQQELKQLEKEAEERKKKV--GTVGMKYTAIAMANRT 193
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: A0A024URR6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URR6_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.920e-27 Identity = 77/203 (37.93%), Postives = 117/203 (57.64%), Query Frame = 1 Query: 19 GPCSCLLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQK-------SVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETG--GMQYTALAMANRS 600 G +C +C ++ RE D +FL+ G +F R+ +TFG TG E+ ++L D D +L W + D K +EI++ DIK+V P G + S GD+LLEL+AE+ +R WV +LQ + E+VR + QK S+K +KDQA +Q + KR E++Q + +AE RK K+ G GM++TA+AMANR+ Sbjct: 2 GNLNCFEHC-QAIREHDE---RAKFLQAGGVFTRKKYTFGLHTGTETIHLQLHADSDEILLWTSDKQADGAKP-NEIEVGDIKSVLPSGPTGFQIYSMQGDVLLELDAESAELRSEWVTALQWICEEVRRTQELNGTQKKHPASASSLKQMVKDQANKQAYWMKRQTELKQRELEAEERK----KKVGNVGMKFTAMAMANRT 195
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: A0A485LAP5_9STRA (Aste57867_18143 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAP5_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.880e-22 Identity = 74/203 (36.45%), Postives = 110/203 (54.19%), Query Frame = 1 Query: 19 GPCSCLLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQK-------SVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETG--GMQYTALAMANRS 600 G +CL C ++ RE D +FL+ G +F R+ +TFG TG ES ++L D D +L W + D K +EI++ DIK++ P G + + S G++LLEL+A+ +R WV +LQ + E+VR + QK S+K +KDQA +Q++ KR QQ K K+ G GM+YTA AMANR+ Sbjct: 2 GNLNCLEQC-QAIREHDE---RAKFLQAGGVFTRKKYTFGLHTGTESIHLQLHADSDEILLWSSDKQADDAKP-NEIEVGDIKSILPNGGSGFQIYSMQGEVLLELDADTAEMRTEWVTALQWLCEEVRKTQELNGTQKKHPASASSLKQMVKDQANKQQYWMKR----QQELKXXXXXXXXXXKKVGAVGMKYTAQAMANRT 195
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Match: A0A3M6VC71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VC71_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 8.450e-16 Identity = 67/193 (34.72%), Postives = 104/193 (53.89%), Query Frame = 1 Query: 37 LNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKSEGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAVAEDVRLNPQARMAQKSVKDRMK------DQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANR 597 LNC+ + R + L +G FKR+ G TG E V+L D T+L W+ D K+ IDL+ IK+V+ G A ++S GD++L++EAE+G +RD+WV LQ + E + NP ++ ++ MK D+A++Q + AKRT E++Q ++ GM+YTALAM+NR Sbjct: 5 LNCLAQCQTRQEGTQRLLILEKGAYFKRKKTILGLTTGTERVHVKLDKDGHTLL-WKLH---DSIKNVTTIDLHSIKSVQAHGEAGFSVTSPNGDVVLDVEAESGELRDTWVTHLQMICE--KSNPSDE-TEEEMQSGMKLCKVVEDRAKKQVYWAKRTQELEQRXXXXXXXXKKFAGV--GMKYTALAMSNR 188 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.722.1 >prot_Ecto-sp6_S_contig100.722.1 ID=prot_Ecto-sp6_S_contig100.722.1|Name=mRNA_Ecto-sp6_S_contig100.722.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=201bp MGDDYSGPCSCLLNCVRSWRERDRLRRHTEFLRQGDLFKRRTFTFGFGTGback to top mRNA from alignment at Ecto-sp6_S_contig100:289529..292435+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.722.1 ID=mRNA_Ecto-sp6_S_contig100.722.1|Name=mRNA_Ecto-sp6_S_contig100.722.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2907bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:289529..292435+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:289529..292435+ >mRNA_Ecto-sp6_S_contig100.722.1 ID=mRNA_Ecto-sp6_S_contig100.722.1|Name=mRNA_Ecto-sp6_S_contig100.722.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:289529..292435+ (Ectocarpus species6 EcLAC_371)back to top |