mRNA_Ecto-sp6_S_contig100.719.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A6H5KTH9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH9_9PHAE) HSP 1 Score: 685 bits (1767), Expect = 7.810e-242 Identity = 363/389 (93.32%), Postives = 372/389 (95.63%), Query Frame = 1 Query: 1 MARWYVLLIFVLEGICRSTASDSAFVISKLSSRRQQWAWTAGRTQRERRDSACSMGAGSGEGGGGEVVNKAIVAGLLGLQLLSLPLGVVSRQPRGAALPRLNVLSAAAEVTTPQATEEEKFVEIELEKFERKTQVEGNLKKQSTAKRVPLPDELQTPKKGKQSPRVKLVPVSDEKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRTDGTLTREMRILELSDIARQLPDDPKMTAGGSPPAKK 1167
M R YVLLIFVLEGIC STAS SAFV SKLSSRRQQWAW AG TQR RR+S CSMGAGSGEGG GEV+NKA+VAGLLGLQLLSLPLGVVSRQPRGAALPRL+V+SAAAEVT PQATEEEKFVEIELEKFERKTQVEGNLKKQS AKRVPLP+ELQTPKKGKQSPRVKLVPVS++KLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCE DFVALIDGMYPT+KPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFF DIPDEMLRYERDSKVPL VRDAVLILKGPDKGRTAIVVGVIKSRNQAVVR DGTLTREMRILELSDIARQLPDDPKMTAGGSPP KK
Sbjct: 1 MERRYVLLIFVLEGICSSTASGSAFVFSKLSSRRQQWAWAAGSTQRGRRNSGCSMGAGSGEGGRGEVMNKAVVAGLLGLQLLSLPLGVVSRQPRGAALPRLDVVSAAAEVTAPQATEEEKFVEIELEKFERKTQVEGNLKKQSKAKRVPLPEELQTPKKGKQSPRVKLVPVSNDKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEEDFVALIDGMYPTDKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFTDIPDEMLRYERDSKVPLTVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRMDGTLTREMRILELSDIARQLPDDPKMTAGGSPPTKK 389
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A836C8F8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F8_9STRA) HSP 1 Score: 237 bits (604), Expect = 6.360e-70 Identity = 122/214 (57.01%), Postives = 158/214 (73.83%), Query Frame = 1 Query: 502 LVPVSDEKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRTDGTLTREMRILELSDIARQLPDDPKMTA 1143
+VPV D +L +V IQ L PYL+EVEYLITS++W YL+GFLGVF+ E +FV LIDG+YPT P D SSR++MQ EAQNVFLA+DDL AS K+ K +EK++VKLAL+YDRFLKAG +V YDP+++TE F+ IPD L Y D+ P ++D +LILKGPDKGRT ++GVIKSR +A+VR D +E+++L L DIA+QL P A
Sbjct: 1 MVPVRDNQLETAVAKIQALNPYLEEVEYLITSKNWGYLQGFLGVFSEQEENFVDLIDGLYPTESPADKSSREAMQYEAQNVFLALDDLNTASRYKRAKAAEKSFVKLALAYDRFLKAGGLVQTYDPITSTEPFYSSIPDSALVY--DTTKPPELKDNILILKGPDKGRTGRLIGVIKSRQEAIVRMDHN--KEVKLLSLGDIAKQLDTPPPAPA 210
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7S2UZ25_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ25_9STRA) HSP 1 Score: 138 bits (347), Expect = 9.010e-32 Identity = 90/214 (42.06%), Postives = 125/214 (58.41%), Query Frame = 1 Query: 499 KLVPVSDEKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVS-NTEKFFVDIPDEML---RYERDSKVPLA---VRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRTDGTLTREMRILELSDIARQL 1119
K+ V LA++ IQ L PY+DEVE I W + GFLGVF+ E FV LIDG++P+N P+D SR+SMQ EAQ +FLA+D+L +A+ K+V+ S AY KLA SY RFL+A +VP D T D EM +YE + L RD VL++ GPDKGR +V I+ +AVV+ D +T+E+ + L + +Q+
Sbjct: 172 KVTGVGKSDLAEAKIKIQALQPYVDEVENYIYEERWPLMGGFLGVFSEQEDQFVNLIDGLFPSNSPLDTISRESMQYEAQRMFLALDELREAAKLKQVRISRDAYSKLAKSYFRFLEAAALVPKVDLAQLATSTNLNDSEMEMEAEEKYEERKQSTLERPEPRDEVLLVSGPDKGRLGKLVA-IEINGKAVVKLD--ITKEVIEVPLESVVKQV 382
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7S2RHK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHK3_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.170e-31 Identity = 74/205 (36.10%), Postives = 131/205 (63.90%), Query Frame = 1 Query: 541 ETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRTD---GTLTR----EMRILELSDIARQLPDDPK 1134
E I+ L YL+E+E I +R WD L ++GVF E F +ID + + D ++ +M+ EA+ +FL +D + +A+ + ++ +EK+YV+LA++YDRFLKA ++ YD ++T K + IP+++L Y+R+ P V+D VLI+ GPDKGRT ++GV + ++ VVR + T ++ E+++++L ++A+ +PD P+
Sbjct: 168 ERIKVLYAYLEEMERDIFARKWDTLSSYIGVFEKQELAFENIIDSLRTSQAAADRDAKRAMEYEARQMFLTLDAMAEATRFRDIRQAEKSYVQLAIAYDRFLKAADLYDVYDD-TDTSKLYESIPEDLLVYDRED--PPRVQDDVLIIAGPDKGRTGKLIGVSDASSKGVVRVEYRKRTASKDASFEVKVVDLQNVAKTIPDKPQ 369
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7R9U506_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U506_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.940e-31 Identity = 66/168 (39.29%), Postives = 110/168 (65.48%), Query Frame = 1 Query: 526 LAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVI 1029
+A + I L PY+DE+E I + ++ L+ FL VF+ E FV IDG+ +++ ++M+ EA+ +FLA+D++ +A+ +K G +K Y+KLAL+YDR+LKA + +P YD + +TEK+F +IPDE L ++ + K +D V+ ++GPDKGRT +++G I
Sbjct: 114 IATARRKIAALKPYMDEIERYIFTNDYEPLRAFLNVFSQQEDSFVKTIDGVASRGTADAIAAAEAMEHEAKQLFLALDEIRKAATLEKPSGLKKGYIKLALAYDRYLKASDNLPGYDKIVSTEKYFANIPDEWLVFDTEKKPE--PQDPVIFIEGPDKGRTGVLLGYI 279
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A6U4CV34_9STRA (Hypothetical protein n=10 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CV34_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.830e-28 Identity = 78/200 (39.00%), Postives = 123/200 (61.50%), Query Frame = 1 Query: 487 SPRVKLVPVSD--------------EKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNK-PVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVP-AYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSR 1038
+PR K +P SD ++ K+ E I L PYLDE++ I + + L+ FL VF+ E F+ I+ + ++ P + ++M+ EA+ +FLA+DD+ +A+ +K +K Y+KLAL+YDR+LKA + +P YD V +TEKFF D+PDE L Y+ ++ +P+++ D VL + GPDKGRT I++G KSR
Sbjct: 92 APRPKKLPFSDVENRKPTAASAQWNSEVRKAREKIAALKPYLDEIQRYIYTEDYAPLRAFLNVFSAQEEAFLTTIESVGSASRGPAASVTAEAMEHEAKEIFLALDDIRKAATLQKPVALKKGYIKLALAYDRYLKASDNLPLGYDNVVSTEKFFADVPDEWLVYDTET-LPVSL-DPVLFIAGPDKGRTGILLGY-KSR 288
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: D7FKJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ3_ECTSI) HSP 1 Score: 120 bits (300), Expect = 7.140e-26 Identity = 62/197 (31.47%), Postives = 116/197 (58.88%), Query Frame = 1 Query: 541 ETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGV---IKSRNQAVVRTDGTLT---REMRILELSDIAR 1113
+ ++ A LDE++ I++ WD + + F T F D +PT+ PVD +SR +++ E + AV+ L +A+ + + ++ A+ ++++YDR+LKAGN+ YD V++TE F+ D+ + L+Y SK P ++D VL++ GPDKG+T ++GV S +A+V+ + + RE++++ L +A+
Sbjct: 132 DKLRRAAKMLDELQDDISNSDWDLVTTYPNAFRTLVPVFTKYTDAAFPTDDPVDTTSRVALRYEVGRFYGAVERLKRAAEQQNSREAQSAFAAMSVAYDRYLKAGNLYDGYDSVTSTEGFYADVSNSSLKYVPPSKDPPKIKDNVLLVAGPDKGKTGFMIGVEGGSLSATKAIVKLETSSALGMREIKVVPLDYVAK 328
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A0G4GSY0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSY0_VITBC) HSP 1 Score: 118 bits (296), Expect = 2.300e-25 Identity = 66/197 (33.50%), Postives = 113/197 (57.36%), Query Frame = 1 Query: 547 IQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGV-----IKSRNQAVVRTDGTL--TREMRILELSDIARQ 1116
I+ +A LDE++ I WD L + F D +P PVD ++R +++ E +F +V+ L +A K V+ +E+A+ +++S+DR+LKAG++ YDP+ +TEKFF + D L Y + P +RD VL+L+GPDKG+T I++GV K + + VV+ D + RE++++ + IA++
Sbjct: 112 IRQIATVLDELQADIYDEDWDILASYPQQLRAYVPIFTKYTDSAFPGKDPVDENTRFALRYEVGRLFGSVERLKRAVDKKDVRETEEAFAAMSVSFDRYLKAGDLYEVYDPIISTEKFFEGVEDSQLVYVPPLRDPPKIRDQVLLLRGPDKGKTGILLGVEGDEVAKVKRKGVVKLDTKVGSIRELKVVPYAFIAKR 308
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7S3Y3I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I2_HETAK) HSP 1 Score: 115 bits (289), Expect = 9.050e-25 Identity = 59/193 (30.57%), Postives = 109/193 (56.48%), Query Frame = 1 Query: 541 ETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKS-------RNQAVVRTDGTLTREMRILEL 1098
+ ++ +A LDE++ I + W+++ + F F D + D SR +++ E +F AV+ L +A+ K + ++ A+ +++++YDR+LKAG + AYDPV++TEKFF D+PD LR+ + P ++D VL+ GPDKG+T ++G+ ++ + +V+ D T+ R +I E+
Sbjct: 89 DRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREI 281
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7S3Y3T3_HETAK (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3T3_HETAK) HSP 1 Score: 115 bits (289), Expect = 5.760e-23 Identity = 59/193 (30.57%), Postives = 109/193 (56.48%), Query Frame = 1 Query: 541 ETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKS-------RNQAVVRTDGTLTREMRILEL 1098
+ ++ +A LDE++ I + W+++ + F F D + D SR +++ E +F AV+ L +A+ K + ++ A+ +++++YDR+LKAG + AYDPV++TEKFF D+PD LR+ + P ++D VL+ GPDKG+T ++G+ ++ + +V+ D T+ R +I E+
Sbjct: 598 DRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREI 790 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.719.1 >prot_Ecto-sp6_S_contig100.719.1 ID=prot_Ecto-sp6_S_contig100.719.1|Name=mRNA_Ecto-sp6_S_contig100.719.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=390bp MARWYVLLIFVLEGICRSTASDSAFVISKLSSRRQQWAWTAGRTQRERRDback to top mRNA from alignment at Ecto-sp6_S_contig100:264394..271779+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.719.1 ID=mRNA_Ecto-sp6_S_contig100.719.1|Name=mRNA_Ecto-sp6_S_contig100.719.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7386bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:264394..271779+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:264394..271779+ >mRNA_Ecto-sp6_S_contig100.719.1 ID=mRNA_Ecto-sp6_S_contig100.719.1|Name=mRNA_Ecto-sp6_S_contig100.719.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:264394..271779+ (Ectocarpus species6 EcLAC_371)back to top |