mRNA_Ecto-sp6_S_contig100.710.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig100.710.1
Unique Name	mRNA_Ecto-sp6_S_contig100.710.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig100.710.1 vs. uniprot
Match: A0A6H5KSZ1_9PHAE (Inorganic diphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 7.710e-49
Identity = 94/110 (85.45%), Postives = 101/110 (91.82%), Query Frame = 1

Query:    1 MYTRHDA--AALARERSCNQAEDRTSLREAIEVTSMMVSGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAEAYDIKVKGEENTMDYRAFFHQA 324
            ++T+HD   AAL RE+S NQ EDRTSLREAI+ TSMMV GRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRN GRNLQMATVAEAYDIKVKGEENTM+YRAFF+QA
Sbjct:   72 VHTQHDTSPAALVREKSYNQ-EDRTSLREAIQATSMMVRGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNAGRNLQMATVAEAYDIKVKGEENTMEYRAFFNQA 180

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.710.1 vs. uniprot
Match: D7FKG7_ECTSI (Inorganic diphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG7_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 8.230e-39
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1

Query:  100 MMVSGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAEAYDIKVKGEENTMDYRAFFHQ 321
            MMVSGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAE YDIKVKGEENTMDYRAFFHQ
Sbjct:    1 MMVSGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAETYDIKVKGEENTMDYRAFFHQ 74

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.710.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KSZ1_9PHAE	7.710e-49	85.45	Inorganic diphosphatase n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FKG7_ECTSI	8.230e-39	98.65	Inorganic diphosphatase n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig100	contig	Ecto-sp6_S_contig100:192942..195762 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	142.1
Seed ortholog evalue	1.5e-31
Seed eggNOG ortholog	2880.D7FKG7
Model size	325
KEGG ko	ko:K01507
KEGG Pathway	ko00190,map00190
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003824,GO:0004427,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006952,GO:0006970,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009941,GO:0010035,GO:0010038,GO:0010876,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019915,GO:0031967,GO:0031975,GO:0033036,GO:0042221,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0050896,GO:0051179,GO:0051235,GO:0051704,GO:0051707,GO:0065007,GO:0065008,GO:0098542
Exons	4
EggNOG free text desc.	inorganic diphosphatase activity
EggNOG OGs	COG0221@1,KOG1626@2759
EC	3.6.1.1
Cds size	324
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348722.347657-CDS-Ecto-sp6_S_contig100:192941..193013	1682348722.347657-CDS-Ecto-sp6_S_contig100:192941..193013	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 192942..193013 -
1682348722.3577766-CDS-Ecto-sp6_S_contig100:194997..195060	1682348722.3577766-CDS-Ecto-sp6_S_contig100:194997..195060	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 194998..195060 -
1682348722.3671758-CDS-Ecto-sp6_S_contig100:195382..195516	1682348722.3671758-CDS-Ecto-sp6_S_contig100:195382..195516	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 195383..195516 -
1682348722.3748507-CDS-Ecto-sp6_S_contig100:195707..195762	1682348722.3748507-CDS-Ecto-sp6_S_contig100:195707..195762	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 195708..195762 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig100.710.1	prot_Ecto-sp6_S_contig100.710.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig100 192942..195762 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig100:192942..195762-
coding sequence from alignment at Ecto-sp6_S_contig100:192942..195762-

protein sequence of mRNA_Ecto-sp6_S_contig100.710.1

>prot_Ecto-sp6_S_contig100.710.1 ID=prot_Ecto-sp6_S_contig100.710.1|Name=mRNA_Ecto-sp6_S_contig100.710.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=108bp
MYTRHDAAALARERSCNQAEDRTSLREAIEVTSMMVSGRAVATALCALGT
TSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAEAYDIKVKGEENTMD
YRAFFHQA

mRNA from alignment at Ecto-sp6_S_contig100:192942..195762-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig100.710.1 ID=mRNA_Ecto-sp6_S_contig100.710.1|Name=mRNA_Ecto-sp6_S_contig100.710.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2821bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:192942..195762- (Ectocarpus species6 EcLAC_371)
ATGTACACACGACACGACGCTGCTGCACTCGCGCGTGAAAGGAGCTGCAA
TCAAGGTGAGGTGTGAATTTGCGCAACGTTTTTGACAAGCCGCTTGGTGT
AGTAAAGTGACGCGAGCTTGGGGCTTGTAGGGGATGATGGTTGCTGGGGT
GCAAATACAATGTGTAATGTCAAACATACCTCCACGCCTCCCTCCCCACA
CGCACGCATACACGCATACATGCAACCACCTTGCGCGTGGATCCAGCAGA
GGATCGCACCAGTCTCCGGGAAGCCATCGAAGTTACTAGCATGATGGTCA
GCGGAAGGGCAGTCGCCACGGCTTTATGTGCTCTGGGCACCACCTCCGCG
TTCACAGCCCCGCTGGCAGGCTTCCGAGCGGTGAGCGAAGTGTGCGAGAT
GACAGGTTCAACACACGGTTGCCAACCAACTACAATTGTATTCTACAGCA
GTATGCATACAAAACAGCTGCCGCAGCAGCAGCAGCAGGAGCAGGAGTGC
TCTGGTGTATCGTCGCACGGCCGCGTTTGCGTGTCTTTAACTCTCAAGGT
AGCCTGACGTTTGCGTGGAGCGTTTTCTTGAGCATGCTAGTCGTTTGTTT
TGGCACGAGCTTTACACGTTGTGTGTTGGCCTGGTCGTTGATGTCGCTCG
CTCGGTACGCGTCGTGTGTGCATGTCTCTCGATGTTCCTGGTGCTGGTGC
AGGCTAAGGGCGTGTCGAGGCAGGTCACCCGGAATGTCGGGAGAAACTTG
CAGATGGCCACCGTGGTGAGTTCCCGTGGAACCAGACTACGGTCTTCCAG
TCGGTGTTGGTGGCGAAATGAACTGCCGTGGAGGTTTTAACAGCAGTCAT
GACACAGCAGGCAGCGGTGAAGATCAGGTGTCCGCACACGGCTGACAAAC
TGTTCCTGCTGGCTTGCACGTCCATGTTATCAAGAGACACGTGCGATGTG
TTCTTTGTTATTTCTTAGGAGAGAAAGTTGGTGCTGATGCCACATGGCGA
AACCGGAGTTTTCTCCCAAGGGAGGTTCGTTGTGGACCTGGCAGAATCGT
GCAAGCAAGGCTCTCGTATGTACGTACACACATGCATTCCGTCTCCGCCG
GCGCCAGTCTGCCGTACCACCTCTTTGATAAGGTGTTGCACACTCACAGC
CCGGAAATCCGTGGGTAGTCTAACCCTAGAGCCATGAGTGTGCCCTGTGT
AGAACCGGCCTCTCATCATCGCGGCTTCAGTACCCAACAGGTGCTATTTT
ACAGCAGACAAGTGCGCCCCGGCAGCAGCTACGCGCTGTGTTGTTCCAAT
CTCCCGTACCCAACAACGGACGGTGCAATGCTTTCCGAAGTCAGTCGGGG
TCAGTGCTTTCGTGGTGGCTTGCCTCGAACAGGTCGTATAGATGCGACGA
GCGAGGTGTGGGTGATGTCGCACGCATTGTCCCTGTGAGTTGGCCTCTCA
ACCCTGAAACACTCCCCATGCATGTTTGTGTCGTCGTGCCTTACCGCAAG
AGGCGGAGAGATAGCACCGGGTTGTTGTTGTTGTCTTCACATCGAACCGT
TCTGATCTCTGTACCGGTACAATCTTCATCTGTCCGTTCTAGTCTAGCAC
TTGACGCGGTCGATTCTTGTTGTAAATGTTATCCCGGTGCTTGCCTTTTG
TACCAGAGAGTTGTCTTCTTGTCCCGGATCGGTGTGGCCCTCCAGCTCTG
GACTCTTTCCTTTCCTGGCCTTTCCTCTCTCTGGCGCATACCCTCACAGC
TCGCGGTGTCTCTGCCACCCTCACCGTGTGCGATCGTTATTTTCTACGCC
ATTAAGTTTTTCCTCCATGCTCTTTGTCGCACCCCGGTGCGGAAATGCAA
ACCAATCACTTCATTTAGTTGTTTCCAAGTCACCCGGTGCGATCTCTCCG
ACCGGTGCGATGCCCAGTGGAATGGACACACACGGGCCTACTCGTGCTCG
GCGGTGTTGTATGCACGCACCCGGGTGCCATCTCCCCGACCGGTGACATC
TCTCCACCTCTGAGTATGTTGGTACCGGTGCAGGTACCAACAAGCAGACG
ATGTGCGTGTACCCTACACGAACGTAGGCTGGTAGTACATAGCAGCTTTC
CATGCAGCGAATGGCCGTGAGTTTGAATGCGAGTTGGGCTGTGGCGTGAC
AAGGACAACAAACGATGTTTTGCATCTGGGGTACCGTTACATACGGTATG
AGGTTGTCTCCCGCTTTCGTTTCGGTCTTCCTCTACGAATACCAGTTATC
AAGAGCAGCAGAACATAACATTTCCTTTCGAAAGGCGCGGTATGTTGTGT
GCTTGGCGCACAGTTTGCAATTCCATACTGACCACATGAAAACAACAGAC
GATCCCGCGCGAACCGCGCCGAACGTACACACGTACATGAAGGAGTGGTG
CTCCGCTGATACCGCCACCACATGTAAAACGTACCCGCATGTACCTCTTT
ACGGCACAATCTTGGATTTGAGGGTCGGTGAGATCCCGCCCCGTGTGATC
TCACTCGACCCGGGTGCGGAAATACAACAAACTCATGCCAGTTTTTGTTT
GTTCTCACCTTGTACCAGCTTTCCGACCCGTGCCATCTCTCCAATTCTTA
CGGTAACCCACAGAGACAGGTTCGGTCGCCATGTTTGAAACGGCGCATGT
ACAGAAATAAGGGCGAGAGTCACAGATCACAACGTTTAATGTTCGTGCGT
GTTTTTCTCCTGTAACCCGCTTTTCTTTCATGTTGTGCGTGCCGCACAGG
CCGAGGCATACGACATCAAGGTGAAGGGCGAGGAGAACACGATGGACTAC
CGCGCGTTCTTCCACCAGGCG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:192942..195762-

>mRNA_Ecto-sp6_S_contig100.710.1 ID=mRNA_Ecto-sp6_S_contig100.710.1|Name=mRNA_Ecto-sp6_S_contig100.710.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:192942..195762- (Ectocarpus species6 EcLAC_371)
ATGTACACACGACACGACGCTGCTGCACTCGCGCGTGAAAGGAGCTGCAA
TCAAGCAGAGGATCGCACCAGTCTCCGGGAAGCCATCGAAGTTACTAGCA
TGATGGTCAGCGGAAGGGCAGTCGCCACGGCTTTATGTGCTCTGGGCACC
ACCTCCGCGTTCACAGCCCCGCTGGCAGGCTTCCGAGCGGCTAAGGGCGT
GTCGAGGCAGGTCACCCGGAATGTCGGGAGAAACTTGCAGATGGCCACCG
TGGCCGAGGCATACGACATCAAGGTGAAGGGCGAGGAGAACACGATGGAC
TACCGCGCGTTCTTCCACCAGGCG