Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 350 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-12_002080.1 |
| Cds size | 348 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348721.685004-CDS-Ecto-sp6_S_contig100:141862..142011 | 1682348721.685004-CDS-Ecto-sp6_S_contig100:141862..142011 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 141863..142011 + |
| 1682348721.6930249-CDS-Ecto-sp6_S_contig100:144345..144544 | 1682348721.6930249-CDS-Ecto-sp6_S_contig100:144345..144544 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 144346..144544 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.700.1 >prot_Ecto-sp6_S_contig100.700.1 ID=prot_Ecto-sp6_S_contig100.700.1|Name=mRNA_Ecto-sp6_S_contig100.700.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=116bp
GSGGAGEVHARQDRCRDGPGGGDLRHNPLNTSMASYAWVSRVAGRHCGPC
PRRARSRFAEARTIISRSDGLVEHSETDVIGGGREDSNKLRRNWPRWIPP
RTHKRTLQQRESPGG* back to topmRNA from alignment at Ecto-sp6_S_contig100:141863..144544+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig100.700.1 ID=mRNA_Ecto-sp6_S_contig100.700.1|Name=mRNA_Ecto-sp6_S_contig100.700.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2682bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:141863..144544+ (Ectocarpus species6 EcLAC_371)
GGATCGGGCGGAGCGGGAGAGGTTCACGCTCGCCAGGATCGTTGTAGGGA
TGGCCCTGGCGGAGGGGATCTCAGGCATAACCCACTGAACACATCGATGG
CCTCATATGCTTGGGTCAGTCGGGTCGCCGGACGACATTGCGGGCCCTGG
TGAGTGCGTGCTGTTCTGTCTCTGGTTGCATGGAAGGTCTGGGTGCCAGC
CGTTGTGAAGTACGCTCGGGTTGGGATGTGCCTAAACGTGTTTGCTCTCA
CCGCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTTGGCTGT
TTGTGGGTGTAGTACTTCTTTTTCTTTTTTCTTGTTAGCACCGATCGCGC
AAACGGGCTGACCAATGAAAAGACGTCAGTCTCAGTGCGGTTTGAAAACA
CAAAACACTTCTAAGTGCCATTAACTGGGACCCCGTGAGGGGGCGGCGTG
GGGGAGAGTAATCTATTCTCCGGATCAAAGACAGAAACGGTAGCAACAGA
AGAAAACTGCGCGCGTCTATGAAGGCTGCTACCTTGCACTCGAGTTCGTT
TTGGAGTGCTTTCACCATCACCCTCCTTGCTTTCACTCCCATCGTTCTCA
TCATCAGTTTGACAGCAACTTTTCGACATTTCTTCTCTGGCCCTGCGTCG
TTTGTGGTGGGGAAGGTCATCTCTGTGTGTTTTTATTGTTAGCATCGACC
GCGCTAACCGGTTGACCAATAAAAATACGTCAGTCTTAGTGTGGTTGAAA
ACACCAAACACTTTTAAATGCCATTAGCTGGGAGCCCATGATGGGGCGGC
ATgggggggGGGGGGTACTCTTATGTTTTGTATGCCTTAGCGGTTAGACC
ATTGACCACGCGTCCTCGAGAGGACGGAGCATTGTTCCCACAGGACCGAT
CACCGATGGCCAATCGTTCCTTCCTACTTTGCCAAAGGTGGCTAAAAAAT
GTCTTCCCTAGTTTGTCTTTCCTAACGATATTCCTTCTCGCCTGTTCAAA
CCACTTCCTACTCCCCAGTACAGTTACCGTCCTCTCCTCTCTATTCCATG
CCTCAAACATCTCCCTGTACCTCCCTTGTATATTTGCCATCTCAGTCATG
TACGCTTCCCTCTCCGTATTGTACAACTGACATTCCGCGACTACATGAAC
ACGGTCTTCGCATGCGAAGCCGCAATCACATTTGAACTTGTCGTCTTCGT
CGTCTACCGTCCTATGTCTTCGTCGACGTTCTCGAAGGCCTATGTCCCCG
GTCCTGAATTTGAGCTTAAACTTTGTCCCTGCATCCATTGGTCCATGTAG
GTAGTCCTTGAACCCTATTCCTTCTTTCAACATTCCGTACACTTCTAGAC
CCTCCTTATCCTCGGTTTCTTTCCTTAGATTCTGTTCTTCTCTCTCGGAA
CAAGCAACAGACATATTCTCCTTGAACCCCTGTAGACCCTCCGTTACTAG
GCTTTCATCTTCATCGATTTCGAACCCCTTCCATTCGTCCTCTACAACCT
TGACCCATTCCGTGGGTTGTCTATCCCTCTTTTTGTTTGCCCACTTCGCC
TCCCATACTATTGTCGGCAACCTCTCCTCTCCCATCCCGATGGGGCGGTA
TGGGGGAGATTAATCTATTCTCCGGATCAAAGACAGAAACGGTAGCAACA
GAAGAAAACTGCACACTTCTACGAAGGCTGCTACCTTGCACTCGTGTTCG
TTTTGGAGTGCTTTCACCATCACCCTCCTTGCTTTCACTGCTACCATCGT
TCTCATCATCATCATTCTGACAGCTATTCTTTGGTAGTTCTTCTCTGGCC
CTGCGTCTTTTGTTGCGGGGAAGGTCATCCGCCTCGAAGCTCTTGCTCTC
TTCCACGCCATGATGCCCTCCTCGACTACTGTTTTGGTCTGTCTCGTCCT
CCTCCCGTTCCCTCTCCTCCTCTTTCATCGCTGCCAAACGAATTCCCCTC
ATTGTCATCCTGGTCGTTTCTATCTGCACTACTACCGAGATCCCAGCCTA
TTGACCATGGTGGGAATTGATCCATCAGTAGTAGTCCATGACGTTTGAAA
CCATCACGAGTTCGTACGGATAGAAAACGAGCCAGCTCGAAGGGTGTGTG
TGTGTGTTCTTCGTCGCGTGGTCGATTTGCCGCGGGTGTACGCATTGTTC
GAAGACTACAGCTGCATCGATACCCTCAATCGGCAGCGTGCGTTGCTGTG
TGACGAATTCTCTCGGTAGGCTGTAGAAGAACACGACCGCCCGATGGTCA
CAAACGTTTGTGTCGTCTCGGTGATTCGTGCTGCGGCCCCTTCCCGGGGG
GTCAATATACCCCACCTGTTTTCACTCGCGCTCGCCGAGGGTATTGTTTT
TGTCGGTGGTTTGCGAAGAACTTCTTGTGCTTGGTTCTGAATCGTTTTCT
GTTGTGCCTGTTTTCGCTTGTGTGCCCCGGTGGTCGATCGCCTGTTCCAC
CACTTTTTCTTTTTTGTTCCGGTGGCTACCCAGTCCTCGCCGGGCTCGAT
CGCGGTTTGCAGAAGCACGGACAATTATATCGCGCTCAGACGGCCTTGTA
GAGCATTCAGAGACAGATGTCATTGGTGGGGGAAGAGAAGATAGCAACAA
ACTGCGGAGGAACTGGCCTCGCTGGATCCCGCCACGCACCCACAAGAGGA
CGCTTCAGCAGCGAGAATCGCCAGGAGGCTAG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig100:141863..144544+ >mRNA_Ecto-sp6_S_contig100.700.1 ID=mRNA_Ecto-sp6_S_contig100.700.1|Name=mRNA_Ecto-sp6_S_contig100.700.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:141863..144544+ (Ectocarpus species6 EcLAC_371)
GGATCGGGCGGAGCGGGAGAGGTTCACGCTCGCCAGGATCGTTGTAGGGA
TGGCCCTGGCGGAGGGGATCTCAGGCATAACCCACTGAACACATCGATGG
CCTCATATGCTTGGGTCAGTCGGGTCGCCGGACGACATTGCGGGCCCTGT
CCTCGCCGGGCTCGATCGCGGTTTGCAGAAGCACGGACAATTATATCGCG
CTCAGACGGCCTTGTAGAGCATTCAGAGACAGATGTCATTGGTGGGGGAA
GAGAAGATAGCAACAAACTGCGGAGGAACTGGCCTCGCTGGATCCCGCCA
CGCACCCACAAGAGGACGCTTCAGCAGCGAGAATCGCCAGGAGGCTAG back to top
|