Homology
BLAST of mRNA_Ecto-sp6_S_contig100.693.1 vs. uniprot
Match:
D7FHV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV6_ECTSI)
HSP 1 Score: 139 bits (351), Expect = 5.310e-42
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 1
Query: 1 MRSKRITFAAQLHIALLPSPPSACPGLDPSGDVPQGFRRRLHARKVLDLGLESTTAVGFSGAFHSWETHCY 213
MRSKRITFAAQLHIALLPSPPS PGLD SGDVPQGFRRRLHARKVLDLGLESTTAVGFSGAFHSWETHCY
Sbjct: 1 MRSKRITFAAQLHIALLPSPPS--PGLDASGDVPQGFRRRLHARKVLDLGLESTTAVGFSGAFHSWETHCY 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.693.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 5.31e-42 / Id = 95.77 Sequence D7FHV6_ECTSI
Match Name E-value Identity Description
D7FHV6_ECTSI 5.310e-42 95.77 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 216 Hectar predicted targeting category signal peptide Exons 3 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-00_000580.1 Cds size 216
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348720.9499574-CDS-Ecto-sp6_S_contig100:90448..90518 1682348720.9499574-CDS-Ecto-sp6_S_contig100:90448..90518 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 90449..90518 + 1682348720.9601521-CDS-Ecto-sp6_S_contig100:91029..91094 1682348720.9601521-CDS-Ecto-sp6_S_contig100:91029..91094 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 91030..91094 + 1682348720.9691544-CDS-Ecto-sp6_S_contig100:94260..94341 1682348720.9691544-CDS-Ecto-sp6_S_contig100:94260..94341 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 94261..94341 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.693.1
>prot_Ecto-sp6_S_contig100.693.1 ID=prot_Ecto-sp6_S_contig100.693.1|Name=mRNA_Ecto-sp6_S_contig100.693.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=72bp
MRSKRITFAAQLHIALLPSPPSACPGLDPSGDVPQGFRRRLHARKVLDLG back to top mRNA from alignment at Ecto-sp6_S_contig100:90449..94341+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.693.1 ID=mRNA_Ecto-sp6_S_contig100.693.1|Name=mRNA_Ecto-sp6_S_contig100.693.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3893bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:90449..94341+ (Ectocarpus species6 EcLAC_371)ATGCGATCCAAGCGCATAACCTTCGCTGCTCAGCTGCACATTGCGTTGCT
CCCGAGCCCTCCGAGCGCGT GTGTTTGACAATATACTCGTTTGTGCTCAG
TAGATGACGGCCTCTCTCTCTTTCTGTGTCGCGATTAAATTCCGAATATA
TCTGACTTTCCATCATCGATTTGCCCCCACTTTCGGTTATTAGCGGTTTG
CTTAGCGGTGCCCTTCCTGTACGTCTTTCTGGTTTTTATCTGTTCGCGTT
GTCCCCGTCGAGCCCATTTACAGCTTTTCGAACATCTCCACGACAACGAG
CAGGTTGAATGCAACAACAGCCTGGACCATTCGCGTGCACAGCCACATCT
TTCCAAATGTCTACCGTGAATGCTAGCACCACGTTGTGGCTGAAAGCTCG
TGTGCCCTACAACAAGTTCCATTTGCTCCGTCCAACTCCGTCTCTGTCTC
TTTGTCTCTGTCTGTCTGTCTTTCTCTCTCTTTCTCACTCTGTTTGTCTG
TCTGTCTCCCTCTcCTCTCTCTCTCTATATATATATATATATCTCCTTTT
TCGTATCGTTCCCACCACACATCGCCGTCAGGTCCTGGACTTGACCCGAG
TGGAGACGTCCCTCAGGGGTTTCGTCGGAGGCTTCACGCACGGAAG GTAA
GCATCGTACATAGAGCTACGAGTGTGCCTTCGGCCATGATTGGTGCGCAA
GAGAGTTACACGTGGTGAACACATACGTGATGTGGGGGACCGGAGTTGGC
TTGCCTGACCTACACAACCAAGGAGAGCCGCGAATGCTCACTCCAGCCGA
CACCATTGGTCGATGAGTGCACACTTATGGTTCCGGTTGAAACATGGCAA
TACCCAATACACTCTGGTTTTCGAAGCCTTGCGAATGGATGTTGTTCGGT
GCTTTCGCAGCCCACGCCCCCTCCCTCAAGGGATGCAGTTACAGGTCCGC
AGTCGAGAAAAAGTTGATAGTGTTTTGAGGCTCCATCTTCTACTTTGCCG
CCATCCTTAGGTACAGGCCACCTTGTTGGACCAAACGTGCGGCCCACATC
CGAGCTGTGTTTCTCGATCGTTTCGTTCTCTTGCTTCGAGACTATCTCAG
CTACTCCAGGTCTCAGCTACTCCAGGTCTGACAGTCACAGTAGTGTTCCC
ACGGAATACGTACGCTTTGTTTTAGCTCAGCTTCTGGGTCTGGAGCGGTG
TGTTCTGCCTTGCCTGTGGGAGTTGTTTGCCCTCCTTTTCTGTGCGACGT
TCTGGACTTGGTCGTTCGACAGCCATCTCTTTCTTCGCGATGTCCTGCGT
AATTTATAGGTGTTAGCTTCGTCTGGGACTGCTTGTCACCACGGGCAATA
CCATCATCACATCACACTTGAGCCAGCCGAAGAGGTACTAGGTAGATTAC
TGTGCACCTATGGAAAGGAACGCTTGCTCGACGGTCAGCTGACAACAGGG
CCACCAACAAACGAGTACCCCCCCCCCCTTCCCGTTCTGTTCAATTTTAA
CGCTACAAGGTACGCAATCCTCTCGCCGTACGCCAACGGAAACACGACGG
GAAACTACCGCGGCAGGTCGCAGTTTAGCCAGATGGTGGCGGTGGATCTG
ACCGACTTTACTGTCGAAGGCGTCAGCGTCGTAGACCTCGCCGCCACCTC
TAGACAGCAGGCGAGCAAGCTTAAGAGAAGAGTCAATAGCGGCGCCGTTT
GGATGGTACTCGGTGTAAACCACTGCCGCGCACAAGAATAGAAAACTGTT
CGTTTGGCATGCGAGTTGTCGTATCGTTTTTATCACGACCACATCTATCT
ACTACGGAGGCGCTCGGCATAGGCAGTAAATACGTTTATTTGTTGACCGA
AGTGCTTGCTACGGAAGATGCAACCTCCCGTTTTCGATCACGTGTGACTG
GCTACCATGGCCAATGCGTGATGCAACACAGAAGAAGATGCCCTTGCAGA
CCTTCGCGTAAAGCAGGAAGGGACCGAGTGCAACAATATCTCGTGATTGT
TATCAAATATCTGGGGTTTGGTATCGTTGTTGCCTGTCTAAGAGACCCCT
CCCCCCCGCTTCCCCAAGCAGACCGCTAAGAAAACCTGTCCATCTTcTTC
GACCGTGCTGATGGTAGATAGCTGGTACAAAGGGTTGTGTTTGTTACTAC
TTTTATCTTTGGTGCCTATCGCGAATCGATGGCTGTCTTTCGCGCGGCTG
GTTGGAGAGAGCGACCGCGTGAACCGCACTGCAGCAGGGTaGGTTGACCA
AACCTCGTACATTTTGTAGCATGCGCGCCACAGTCCGTGTTAATTGAGGT
TCGTCCTTTCGCGCATGGCCGTGGTTGCCCTGGAACACTTTTTGCTCTCG
GTTGTGCAGATTCCGTACCAGCCCGACCCTAACCTGAGGGGCTACGTCGG
AGGATTTTCCCTGGGACACCACGTCTACCTCACTCCCCACTTTAACGGGG
TATTTTTCGGCAAGGTAGGTAGGGTAAATACTCTCGGTGTGCGTGGATAA
TCTCGTGTAGATCGCTCTGAAATGCTGCACGCGAGACTCTCGGCGCTTTG
CCGACAAGCTTACAAAGAACAATGTGGTGCCATCGGTCACACCAAGCCGT
ACCCGAAAAACATTTCGTTCGGGTTGACGTGGGTGTACGAAAGCAAAAGA
GGACGGGTTGAGCCCGGCGTGCGGCACAACGTTAAAATCGAGTTACCACC
ACATGCTACAATAGGAACAACATCAATGTTTGTCTTGATTGTCCTCGATT
GACTACGTACGTCGACCTTCCAACCACCCTCGGCACGGTAAAGACCCTGG
AAATAATATCTCAGCACGATTAAAAGTTTTTTCGGGGATTCGGGTGGAGC
ATATTTATCCGCGTACGCTTGTATTGTTGATGAGCACATTCATCCGTTCG
TACAAATCCCCGTTGTGGCTCTTGTCGTCAGGTTGCGCGAGTCGATATGC
GGGAGATGCTGACCATGGCGGCCGGTGAACGAGCGGCGAACTACGACGGT
TTGCAGGTCCGCGGAGCTCAATCCCTCTGTTCTTATGCTCGTGTCTCCAA
ACCACAAACAGTAATTTTGGTTTGTGTCGTCTCCACATGAAACAAACTCC
ATTGTACACCCCAATGTAAGTCCGTGTGCCCCCCGGACAACTCTTCTCGT
TCAGTTCAATCTCACCAACTTAGGTGTCCGCGGGGATGACGCGAGTTTGG
TGATGATTCGGGCATTTTTCGTTTCTCTGTGGTTGTGACAGCGCCGACAG
CTCTAATCGTATCTCCGGCACTAGCATAGCAACGCACGACCACTTGTACC
ACACAAAACGTTTGACCCCCGATATTTGAACCAGTCTTCTTTTTCTCGGA
GACAGCTGATATCCAAAGAAAAAAACTCTGCAGCCGGCAGCTTTCACTCC
ACGTCATGATATGTGCCTTCAATCCCATGACACACAAGTACTCGCCGACG
AGACCTCGAGAGAAGAAAAACGTCATCAGAAAGTATTTTTCTCCCCGCGG
TAGACCCCCTAAAATTAGTGTTGTCTGATCTACTCGTGCTCTGTGATGCA
CGCACTAGTCCGCTGGATGATATCCTATTTCCGTCTCATGCTACCTGTCT
GTCTGAATGATTGTGTGTTTCCCATATAGGGTGAATGCTTCCGTTTCCTC
TCGCCCCTCAACGCCAAGGTTATGACCGAGTTTGTTCGGTGACTCGGTTT
TGTCAAAAATGCCACGCCAACATCCCCCCGTCAAACATGACCGTTGTCTT
CGCCCTCCCCTTACTCCTGCTGCTGCTGCCTGTCGTGTGTGCGCACGCGT
GCGTGTCCGAAGGTGCTAGATTTGGGGCTGGAGTCAACTACCGCGGTGGG
CTTTTCAGGGGCCTTCCACTCATGGGAGACGCACTGCTACTAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:90449..94341+
>mRNA_Ecto-sp6_S_contig100.693.1 ID=mRNA_Ecto-sp6_S_contig100.693.1|Name=mRNA_Ecto-sp6_S_contig100.693.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:90449..94341+ (Ectocarpus species6 EcLAC_371) back to top