mRNA_Ecto-sp6_S_contig10.668.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.668.1
Unique NamemRNA_Ecto-sp6_S_contig10.668.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.668.1 vs. uniprot
Match: D7FHV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.640e-19
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 MRAFCYLVELTAAPNHQELSNAYHRMGKAYQDLGSAIMAL 120
            MRAFCYLVELTAAPNH+ELSNAYHRMGKAYQDLGS IMAL
Sbjct:    1 MRAFCYLVELTAAPNHRELSNAYHRMGKAYQDLGSRIMAL 40
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BLAST of mRNA_Ecto-sp6_S_contig10.668.1 vs. uniprot
Match: A0A6H5JH17_9PHAE (Clu domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH17_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.840e-16
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MRAFCYLVELTAAPNHQELSNAYHRMGKAYQDLGSAIMAL 120
            MRAFCYLVELTA PNH ELSNAYHRMG+AYQDLGSAIMAL
Sbjct: 1248 MRAFCYLVELTAGPNHPELSNAYHRMGRAYQDLGSAIMAL 1287
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHV9_ECTSI1.640e-1995.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH17_9PHAE1.840e-1692.50Clu domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2613715..2613840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score79.7
Seed ortholog evalue3.5e-13
Seed eggNOG ortholog2880.D7G8X4
Model size126
KEGG koko:K03255
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000620.1
Cds size126
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348718.817076-CDS-Ecto-sp6_S_contig10:2613714..26138401682348718.817076-CDS-Ecto-sp6_S_contig10:2613714..2613840Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2613715..2613840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.668.1prot_Ecto-sp6_S_contig10.668.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2613715..2613840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.668.1

>prot_Ecto-sp6_S_contig10.668.1 ID=prot_Ecto-sp6_S_contig10.668.1|Name=mRNA_Ecto-sp6_S_contig10.668.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=42bp
MRAFCYLVELTAAPNHQELSNAYHRMGKAYQDLGSAIMALS*
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mRNA from alignment at Ecto-sp6_S_contig10:2613715..2613840-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.668.1 ID=mRNA_Ecto-sp6_S_contig10.668.1|Name=mRNA_Ecto-sp6_S_contig10.668.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2613715..2613840- (Ectocarpus species6 EcLAC_371)
ATGCGCGCTTTCTGCTACCTGGTGGAGCTCACGGCGGCCCCCAACCACCA
GGAGCTGTCCAATGCCTACCACCGCATGGGGAAGGCCTACCAGGACTTGG
GCAGCGCCATCATGGCTCTCAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2613715..2613840-

>mRNA_Ecto-sp6_S_contig10.668.1 ID=mRNA_Ecto-sp6_S_contig10.668.1|Name=mRNA_Ecto-sp6_S_contig10.668.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2613715..2613840- (Ectocarpus species6 EcLAC_371)
ATGCGCGCTTTCTGCTACCTGGTGGAGCTCACGGCGGCCCCCAACCACCA
GGAGCTGTCCAATGCCTACCACCGCATGGGGAAGGCCTACCAGGACTTGG
GCAGCGCCATCATGGCTCTCAGTTAA
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