mRNA_Ecto-sp6_S_contig10.661.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.661.1
Unique NamemRNA_Ecto-sp6_S_contig10.661.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 9.960e-72
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1
Query:    1 MSNPLTQPDIVFRLMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLAPRSTVCRDIASLGRLDLLVSAREEHECPWDEDTCSYASENGHADVLRWAFANG 354
            M NPL QPDIVFRLMEFVGGEQY+FFAGVSRTWRD W+GRPTTTRA TA+TGVPQLSQSF+CGLAPRSTVCRDIA+LGRLDLLVSARE+HECPWDE+TCS ASENGHADVLRWAFANG
Sbjct:    1 MPNPLMQPDIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENGHADVLRWAFANG 118          
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 3.590e-63
Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 1
Query:   43 MEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLAPRSTVCRDIASLGRLDLLVSAREEHECPWDEDTCSYASENGHADVLRWAFANG 354
            MEFVGGEQYLFFAGVSRTWRD W+GRPTTTRAVTA+TGVPQLSQSFECGLA RSTVC+DIA+LGRLDLLVSAREE+ECPWDEDTCSYASENGHADVLRWAFANG
Sbjct:    1 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENGHADVLRWAFANG 104          
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.590e-25
Identity = 55/91 (60.44%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   25 DIVFRLMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLAPRSTVCRDIASLGRLDLLVSAREEHECPWDEDTC 297
            DIV  + EFV   QYLFFA VSR WRD W  RPT T+A+TA+T VPQLS SFECGL   + VC  +A LGRLDLL  AR    C W+E+TC
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMG-CQWNENTC 97          
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.290e-24
Identity = 53/86 (61.63%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   40 LMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLAPRSTVCRDIASLGRLDLLVSAREEHECPWDEDTC 297
            L EFV   Q+LFFA VSR WRD W  RPT T+A+TA+T VPQLS SFECGL   + VC  +A LGRLDLL  AR    CPW+E+TC
Sbjct:   31 LAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMG-CPWNENTC 115          
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.600e-24
Identity = 55/91 (60.44%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   25 DIVFRLMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLAPRSTVCRDIASLGRLDLLVSAREEHECPWDEDTC 297
            DIV  + EFV   QYLFFA VSR WRD W  RPT T+A+TA+T V QLS SFECGL   + VC  +A LGRLDLL  AR    CPW+E+TC
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMG-CPWNENTC 99          
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 5.060e-23
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   19 QPDIVFRLMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLAPRSTVCRDIASLGRLDLLVSAREEHECPWDEDTC 297
            Q D+   L+EFV  EQ+LFFAGV R W++ W  RP TTRAVT +T V QLSQ+F+CGL+  + VC  +A LGRLDLL  AR  H C W+E TC
Sbjct:    8 QSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARR-HGCAWNEVTC 99          
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.470e-20
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 MSNPL-TQPDIVFRLMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLAPRST-VCRDIASLGRLDLLVSAREEHECPWDEDTC 297
            M NP     D++    EFV  +Q+LFFA VSR WR  W+GRPT+TRA+T +T   QL  S +CGL+P  T VC  IASLGRLDLL +AR      WD+ TC
Sbjct:    1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALG-FRWDKMTC 100          
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 9.770e-13
Identity = 49/102 (48.04%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   13 LTQPDIVFRLMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLAPRSTV--CRDIASLGRLDLLVSAREEHECPWDEDTCSYASE 312
            +T  DIV  L +FV  +Q+LFFA VSR+WRD W  R T T  VT +T   QL  SF CGLA R  V  C   A  G LDLL  A E+  CPW     + A+E
Sbjct:   20 MTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLA-RDGVDWCLTTARAGNLDLLRWATEQG-CPWTRSLSAAAAE 119          
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 8.810e-12
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   25 DIVFRLMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTANTGVPQLSQSFECGLA-PRSTVCRDIASLGRLDLLVSAREEHECPWDEDTCSYAS 309
            D++  ++ FV  +Q+LFFA VSR WR+ W  RP  T  VT ++ V QL  SFE GL   R  +C  IA LG L+LL SAR    C W+  T S A+
Sbjct:   62 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSG-CAWNGLTFSEAA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JM75_9PHAE9.960e-7289.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8W5_ECTSI3.590e-6393.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE2.590e-2560.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0K8_9PHAE4.290e-2461.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI5.600e-2460.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI5.060e-2356.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDD9_ECTSI1.470e-2052.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH49_ECTSI9.770e-1348.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPZ6_9PHAE8.810e-1245.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2517211..2518065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score75.5
Seed ortholog evalue4.5e-11
Seed eggNOG ortholog2880.D7FJY0
Model size855
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2AMK4@1,2RZCC@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-15_004500.1
Cds size855
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.9568944-CDS-Ecto-sp6_S_contig10:2517210..25180651682348693.9568944-CDS-Ecto-sp6_S_contig10:2517210..2518065Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2517211..2518065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.661.1prot_Ecto-sp6_S_contig10.661.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2517211..2518065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.661.1

>prot_Ecto-sp6_S_contig10.661.1 ID=prot_Ecto-sp6_S_contig10.661.1|Name=mRNA_Ecto-sp6_S_contig10.661.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=285bp
MSNPLTQPDIVFRLMEFVGGEQYLFFAGVSRTWRDPWKGRPTTTRAVTAN
TGVPQLSQSFECGLAPRSTVCRDIASLGRLDLLVSAREEHECPWDEDTCS
YASENGHADVLRWAFANGCPWDADTCTMAARHGHLGVLKWARSNGCDWNS
ETSKLAAVGGNFEVIQYLHEHACSLDADTCYGAARAGHLKILMYLRAHGC
EWDQWTTAAAAAQGHLTILSWSHQNGCVMDEDVNYLAAQEGRLDCIEYAL
ANGVPLHAECLQAARESDHADMVNWLVANGCPEP*
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mRNA from alignment at Ecto-sp6_S_contig10:2517211..2518065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.661.1 ID=mRNA_Ecto-sp6_S_contig10.661.1|Name=mRNA_Ecto-sp6_S_contig10.661.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=855bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2517211..2518065+ (Ectocarpus species6 EcLAC_371)
ATGTCCAACCCGCTCACGCAACCGGACATCGTCTTCCGCCTGATGGAGTT CGTGGGTGGCGAGCAGTACCTCTTCTTCGCGGGGGTGTCGCGGACCTGGA GGGACCCGTGGAAGGGACGCCCGACGACCACGCGTGCCGTCACTGCCAAC ACGGGGGTGCCCCAGCTGTCGCAGAGCTTCGAGTGCGGCCTGGCGCCGCG GAGCACGGTGTGCCGAGACATCGCTTCCCTCGGAAGGCTTGACCTTCTCG TGTCCGCTCGCGAAGAACACGAGTGTCCCTGGGATGAGGACACGTGTTCG TACGCGTCCGAAAACGGACACGCTGACGTGCTTCGATGGGCCTTCGCGAA CGGTTGCCCGTGGGATGCTGATACCTGCACCATGGCTGCTCGGCACGGTC ACTTGGGTGTACTCAAGTGGGCCCGCAGCAACGGCTGCGACTGGAACAGC GAAACCTCCAAGCTAGCCGCGGTGGGGGGGAATTTTGAAGTCATACAGTA TCTGCACGAGCATGCGTGCTCGTTGGATGCTGACACCTGCTACGGAGCAG CCCGTGCAGGACACCTGAAAATCTTGATGTATTTGCGTGCCCATGGTTGC GAATGGGATCAATGGACAACTGCTGCAGCGGCTGCCCAGGGACACCTAAC TATTCTTTCTTGGTCTCACCAAAATGGGTGCGTCATGGACGAGGATGTGA ATTATTTAGCAGCCCAAGAAGGTCGCCTAGATTGCATTGAATATGCGCTG GCAAACGGTGTCCCATTGCATGCGGAATGCCTGCAAGCCGCCAGGGAAAG CGACCATGCTGACATGGTGAATTGGTTGGTAGCAAACGGCTGTCCCGAAC CCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2517211..2518065+

>mRNA_Ecto-sp6_S_contig10.661.1 ID=mRNA_Ecto-sp6_S_contig10.661.1|Name=mRNA_Ecto-sp6_S_contig10.661.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2517211..2518065+ (Ectocarpus species6 EcLAC_371)
ATGTCCAACCCGCTCACGCAACCGGACATCGTCTTCCGCCTGATGGAGTT
CGTGGGTGGCGAGCAGTACCTCTTCTTCGCGGGGGTGTCGCGGACCTGGA
GGGACCCGTGGAAGGGACGCCCGACGACCACGCGTGCCGTCACTGCCAAC
ACGGGGGTGCCCCAGCTGTCGCAGAGCTTCGAGTGCGGCCTGGCGCCGCG
GAGCACGGTGTGCCGAGACATCGCTTCCCTCGGAAGGCTTGACCTTCTCG
TGTCCGCTCGCGAAGAACACGAGTGTCCCTGGGATGAGGACACGTGTTCG
TACGCGTCCGAAAACGGACACGCTGACGTGCTTCGATGGGCCTTCGCGAA
CGGTTGCCCGTGGGATGCTGATACCTGCACCATGGCTGCTCGGCACGGTC
ACTTGGGTGTACTCAAGTGGGCCCGCAGCAACGGCTGCGACTGGAACAGC
GAAACCTCCAAGCTAGCCGCGGTGGGGGGGAATTTTGAAGTCATACAGTA
TCTGCACGAGCATGCGTGCTCGTTGGATGCTGACACCTGCTACGGAGCAG
CCCGTGCAGGACACCTGAAAATCTTGATGTATTTGCGTGCCCATGGTTGC
GAATGGGATCAATGGACAACTGCTGCAGCGGCTGCCCAGGGACACCTAAC
TATTCTTTCTTGGTCTCACCAAAATGGGTGCGTCATGGACGAGGATGTGA
ATTATTTAGCAGCCCAAGAAGGTCGCCTAGATTGCATTGAATATGCGCTG
GCAAACGGTGTCCCATTGCATGCGGAATGCCTGCAAGCCGCCAGGGAAAG
CGACCATGCTGACATGGTGAATTGGTTGGTAGCAAACGGCTGTCCCGAAC
CCTAG
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