mRNA_Ecto-sp6_S_contig10.659.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.659.1
Unique NamemRNA_Ecto-sp6_S_contig10.659.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.659.1 vs. uniprot
Match: D7G8W3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W3_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.160e-91
Identity = 188/284 (66.20%), Postives = 200/284 (70.42%), Query Frame = 1 
Query:    1 MCDDATDHRDPRSGSRSS*RPRRGPPVWTPTHASTRFAMARNFPHNLAATHGRTDEAQPREPSPPDGMR*ARERHR*DR---------SVLMEVRENGGGGSLTTDLAARANVALRAVTAGTSAFGNMLRLERPFDIPLKPAGVMNPLAKTARESGKRKSRASDGNNGPKRSGSKAGGAAAESGGANASVSKATESGGTPSLDTEASRKSKALKTTAKAAVKGSKLSSRASSAASEDNDSDDAILASPDADGDTAIPSTLVSGGVQQKQQQQAGGNVRQKHHAP 825
            MCDDATDHRDPRSGSRSS +   GP          +    + FP  +   H  T+E  P +PSP +  R    +   DR         SVLMEVRE GGGGSLTTDLAA ANVAL  VTAGTSAFGNML LERPFDIPLKPAGVM+PLAKTARESGKRK RASDGNN PKRSGSKAG AAAESGGANASVS ATESGGT SLDT+ SRKSKALKTTAKA VKGS+LSS AS           A+LASPDADGDTA PSTLVSG           GNVRQKHHAP
Sbjct:    1 MCDDATDHRDPRSGSRSSWKAEAGPAGLDAYTREHKVCDDKKFPPTILPQH--TEE--PTKPSPENQAR----QEICDRLVSVIDEMRSVLMEVREKGGGGSLTTDLAACANVALSPVTAGTSAFGNMLHLERPFDIPLKPAGVMSPLAKTARESGKRKPRASDGNNEPKRSGSKAG-AAAESGGANASVSNATESGGTASLDTKRSRKSKALKTTAKAVVKGSRLSSCASXXXXXXXXXXXAVLASPDADGDTATPSTLVSGXXXXXXXXXXXGNVRQKHHAP 275
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BLAST of mRNA_Ecto-sp6_S_contig10.659.1 vs. uniprot
Match: A0A6H5KKK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK3_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 9.580e-83
Identity = 158/185 (85.41%), Postives = 166/185 (89.73%), Query Frame = 1 
Query:  235 RSVLMEVRENGGGGSLTTDLAARANVALRAVTAGTSAFGNMLRLERPFDIPLKPAGVMNPLAKTARESGKRKSRASDGNNGPKRSGSKAGGAAAESGGANASVSKATESGGTPSLDTEASRKSKALKTTAKAAVKGSKLSSRASSAASEDNDSDDAILASPDADGDTAIPSTLVSGGVQQKQQQQ 789
            RSVLMEVRENGGGG LTTDLAARAN+AL AVTAGTSAFG+MLRLE+PFDIPLKPAGVMNPLAKTARESGKRK RASD NNGPKRSGSKAG AAA SG ANAS  +AT SGGT SLDTE SRK KALKTTAKAAVKGSKLSSRASS  S DN+SDDA+LAS DADGDT  PSTLVSGGVQQK+Q+Q
Sbjct:   44 RSVLMEVRENGGGGPLTTDLAARANMALSAVTAGTSAFGDMLRLEQPFDIPLKPAGVMNPLAKTARESGKRKPRASDDNNGPKRSGSKAG-AAAASGXANASALQATGSGGTASLDTETSRKRKALKTTAKAAVKGSKLSSRASSVTSADNNSDDAVLASRDADGDTGTPSTLVSGGVQQKEQEQ 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8W3_ECTSI1.160e-9166.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKK3_9PHAE9.580e-8385.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2489557..2492101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size828
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004470.1
Cds size582
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.659.1prot_Ecto-sp6_S_contig10.659.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2490796..2492101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.2051013-UTR-Ecto-sp6_S_contig10:2489556..24896151682348693.2051013-UTR-Ecto-sp6_S_contig10:2489556..2489615Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2489557..2489615 +
1682348693.212884-UTR-Ecto-sp6_S_contig10:2490413..24905351682348693.212884-UTR-Ecto-sp6_S_contig10:2490413..2490535Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2490414..2490535 +
1682348693.2200847-UTR-Ecto-sp6_S_contig10:2490730..24907951682348693.2200847-UTR-Ecto-sp6_S_contig10:2490730..2490795Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2490731..2490795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.227555-CDS-Ecto-sp6_S_contig10:2490795..24909751682348693.227555-CDS-Ecto-sp6_S_contig10:2490795..2490975Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2490796..2490975 +
1682348693.2347498-CDS-Ecto-sp6_S_contig10:2491363..24917261682348693.2347498-CDS-Ecto-sp6_S_contig10:2491363..2491726Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2491364..2491726 +
1682348693.2426286-CDS-Ecto-sp6_S_contig10:2492062..24921011682348693.2426286-CDS-Ecto-sp6_S_contig10:2492062..2492101Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2492063..2492101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.659.1

>prot_Ecto-sp6_S_contig10.659.1 ID=prot_Ecto-sp6_S_contig10.659.1|Name=mRNA_Ecto-sp6_S_contig10.659.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=194bp
MEVRENGGGGSLTTDLAARANVALRAVTAGTSAFGNMLRLERPFDIPLKP
AGVMNPLAKTARESGKRKSRASDGNNGPKRSGSKAGGAAAESGGANASVS
KATESGGTPSLDTEASRKSKALKTTAKAAVKGSKLSSRASSAASEDNDSD
DAILASPDADGDTAIPSTLVSGGVQQKQQQQAGGNVRQKHHAP*
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mRNA from alignment at Ecto-sp6_S_contig10:2489557..2492101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.659.1 ID=mRNA_Ecto-sp6_S_contig10.659.1|Name=mRNA_Ecto-sp6_S_contig10.659.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2545bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2489557..2492101+ (Ectocarpus species6 EcLAC_371)
ATGTGTGATGACGCCACCGACCACCGGGATCCTCGGAGCGGATCTCGTTC
TTCATGAAGGTTTGTTCGGGCTCCTTGTTACTCGGGGGGGTGATATTGCG
CGTGGCAGCCCGCACTTGCCGACCACTGTCTACGGCAGCCAGTCGTGCGT
GGGGGGTGGGGGAGGTTACCCTTTTCCCGCCCCCCCCACCTTTCTTTGTG
GTGGTGGAAGCGCCTCCAACTTGTGTATTGAATACATGGTTGCCGCACGT
CCGAAACTCATCATTGGACGCACGCGGCACGGTGTGGAGAAAAAAATTAA
GGGAGGGGCGCGGAGAAACGTGTGCTGCGTTTGAGGGTTAGCTAATGTTT
ACGAGATCTCGACTCTGTGGTGACAACTCGCCGCGCAACCTACCGTAAGT
CGTGCCGTTGCAGTAACCCTTTCGGCCCTGACGTTGCCATATCTTGTGCC
TGGCCAGCGGTCATACGGTTCGAGTTCCCAGATGTCGGATCTTAGTCCCC
TGCCTTTCTGGCGGCTCTTTGTCACCCACGACTCAAGAGACCATGGCTCA
GAGTACAAAAGCGATGGATTTCTTGCGAATGGTATTCAGCTTTGCAACTA
CGAACTCGGTGGGGGAAACACTGCTTCTGCGTACCCGCAACAGCAGTGAG
CTTTTAGCAAGTCGTCCATATGGCTCTTTGATGGGATTAGTCTTGGTTTC
TTTCTCCACTTTCCTGCTGTGCAGAGCGGTTTCTTGTTTAGAGGTTGCGT
ACATTTTGCACTTGGTGCCCTGTAGGGACGAGATAAATTGAACCCTGCGC
TCCCTGTCTCCCGTACTCTCTCGCTCTCCCATTTTATCCGCTTGCCGCCC
ACCAGAGGCCGAGACGGGGCCCGCCGGTTTGGACGCCTACACACGCGAGC
ACAAGGTTTGCGATGGCAAGAAATTTCCCCCACAATCTGGCCGCAACACA
CGGAAGAACCGACGAAGCCCAGCCCAGAGGTCCGTTCATCTGTGTTTCCC
CCGTCGATTCGTCTTGCGTTTTGAGCGATCGTAGGTGCTTCACGCCTGCA
ACAAGAGCTGTAATCAATCCCTGCTTCTCTTTGAGAACAACATTCCTCGC
CAGCTGAACCGTGTTGCTTGTATCATGTGGGTTGCTGCTTCCCCCCTTGG
TCCTCATGGGAACTCTACCGCCAGAACCAAGCCCGCCAGATGGTATGCGA
TAGGCTCGTGAGCGTCATCGATAAGATCGCTCCGTGCTGATGGAAGTTCG
CGAGAATGGGGGTGGCGGCTCTCTTACCACAGACCTCGCCGCCCGCGCCA
ATGTGGCTCTGAGGGCGGTGACCGCTGGGACGTCGGCGTTTGGGAACATG
CTTCGCCTTGAGCGGCCCTTCGATATCCCGCTCAAACCTGCCGGGGTGAT
GAACCCTTTGGCCAAGACGGTGGGTCAGAGGCGGGAATTTTTCTTGCATA
TCCATTCCCTTCTGCGCTTCACGGCACAAATTATCGTGTTCTGTCTCGGA
AGTGGCGGTTGCTTTAGTCCCTCTTTTTCGTCGCTGGCTGTTACTTACAA
GAGCCGAGTGTCTGTGTTGCCGGCCCATCTTAAGCCGGTCACGCCTCATT
TCCTTGGCTCAACAGACAACATTCATAGGCCTATTGTATAGGCACGTCGA
GCGATACCTTACCTGTTCCGGACTCCCTTTTTCGGATCTGTACATGAAGG
AGCGACCGATACCGGTCGTTTAGACAAACACATGTAGGACGATCTGCACC
ACTTCAATACGTCTACTGGAAAATAGTTCTTGATGCCGCCGTGTGGGCCT
TTGTCAGGCACGGGAAAGCGGCAAGCGGAAGTCCAGAGCCAGCGACGGCA
ACAATGGACCCAAGAGGTCGGGATCGAAGGCTGGGGGGGCGGCTGCAGAA
AGTGGGGGAGCGAACGCGTCCGTATCGAAGGCCACCGAGAGCGGGGGAAC
CCCATCCCTGGACACGGAGGCGAGTAGGAAAAGCAAGGCCCTGAAGACGA
CAGCGAAGGCGGCCGTCAAGGGCAGCAAGCTCAGCAGCCGTGCTTCCAGC
GCTGCATCCGAGGACAACGACTCGGACGACGCCATCCTCGCTTCGCCAGA
TGCTGACGGGGACACCGCTATTCCGTCGACTTTGGTCAGCGGCGGCGTCC
AGCAGAAGCAGCAGCAGCAGGTGCGGTCGGGCGGAGCAGAAGATCCCATT
GCGCTTAGCAGTAGCGATGAAGATGCCGAGAGCAACGGTGCGCGCGGGTC
GGCAGAGTCGGGAGCGATGGAAGAGAACGGTACAGCTCCCGTTCCCGCCC
AGACTTGTTTCTCAGGGGTGTTGGTTGACCACAACAGTGCCCAGCAGCAG
CAGCAGCAGGGCTCGCAAGGAACAGGCACGGCTGGTGTACGCACGGGAAC
ATCTGAGAACCCCCTTGGTGCACAGGCGCCGAGCAACCCTGCATTGGCGA
CTCACGGCCGCGGCAGCGGGTGGTGCTTTCTCGTCTCCCCTCCTGCTCGC
TGACAGGCGGGTGGGAACGTCCGGCAGAAACATCACGCCCCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2489557..2492101+

>mRNA_Ecto-sp6_S_contig10.659.1 ID=mRNA_Ecto-sp6_S_contig10.659.1|Name=mRNA_Ecto-sp6_S_contig10.659.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2489557..2492101+ (Ectocarpus species6 EcLAC_371)
ATGGAAGTTCGCGAGAATGGGGGTGGCGGCTCTCTTACCACAGACCTCGC
CGCCCGCGCCAATGTGGCTCTGAGGGCGGTGACCGCTGGGACGTCGGCGT
TTGGGAACATGCTTCGCCTTGAGCGGCCCTTCGATATCCCGCTCAAACCT
GCCGGGGTGATGAACCCTTTGGCCAAGACGGCACGGGAAAGCGGCAAGCG
GAAGTCCAGAGCCAGCGACGGCAACAATGGACCCAAGAGGTCGGGATCGA
AGGCTGGGGGGGCGGCTGCAGAAAGTGGGGGAGCGAACGCGTCCGTATCG
AAGGCCACCGAGAGCGGGGGAACCCCATCCCTGGACACGGAGGCGAGTAG
GAAAAGCAAGGCCCTGAAGACGACAGCGAAGGCGGCCGTCAAGGGCAGCA
AGCTCAGCAGCCGTGCTTCCAGCGCTGCATCCGAGGACAACGACTCGGAC
GACGCCATCCTCGCTTCGCCAGATGCTGACGGGGACACCGCTATTCCGTC
GACTTTGGTCAGCGGCGGCGTCCAGCAGAAGCAGCAGCAGCAGGCGGGTG
GGAACGTCCGGCAGAAACATCACGCCCCCTAG
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