mRNA_Ecto-sp6_S_contig10.653.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.653.1
Unique NamemRNA_Ecto-sp6_S_contig10.653.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.653.1 vs. uniprot
Match: D7G8V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V7_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 6.030e-145
Identity = 289/297 (97.31%), Postives = 290/297 (97.64%), Query Frame = 3 
Query:  201 TRAQLLWNLKRRIDKGDQKAGTAVDPTVFLGVEERLEELEQGXXXXXXNASYRPYSDNPDSASQQQMVRAMPSPKRVGGGLPVQSEGAGGGGGDLLDLMSMDIGGDGGGAEAGSSPERAPEDGSSADEGDTFLAIEAAPQSAPAQXXXXXXXXXXXXXXXXXXXXXXXXXAGKKTFNLIDFDEEGXXXXXXXXXXXXXXXXXXXXXXXVAYSEGAIGPEATVFEVVFPPGRTPNILLEESQPGNKLTVKSFPKRADGSRGTAETDGKIEKGDFLLAVNSIRLEGLGFNDAIRVLTTQ 1091
            TRAQLLWNLKRRIDKGDQKAGTAVDPTVFLGVEERLEELEQGXXXXXXNASYRPYSDNPDSASQQQMVRAMPSPKRVGGGLPVQSEGAG G GDLLDLMSMDIGGDGGGAE GSSPERAPEDGSSA+EGDTFLAIEAAPQSAPA   XXXXXXXXXXXXXXXXXXXXXXXAGKKTFNLIDFDEEGXXXXXXXXXXXXXXXXXXXXXXXVAYSEGAIGPEATVFEVVFPPGRTPNILLEESQPGNKLTVKSFPKRADGSRGTAE DGKIEKGDFLLAVNSIRLEGLGFNDAIRVLTTQ
Sbjct:   74 TRAQLLWNLKRRIDKGDQKAGTAVDPTVFLGVEERLEELEQGXXXXXXNASYRPYSDNPDSASQQQMVRAMPSPKRVGGGLPVQSEGAGSGEGDLLDLMSMDIGGDGGGAE-GSSPERAPEDGSSANEGDTFLAIEAAPQSAPA-LAXXXXXXXXXXXXXXXXXXXXXXXAGKKTFNLIDFDEEGXXXXXXXXXXXXXXXXXXXXXXXVAYSEGAIGPEATVFEVVFPPGRTPNILLEESQPGNKLTVKSFPKRADGSRGTAEADGKIEKGDFLLAVNSIRLEGLGFNDAIRVLTTQ 368
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8V7_ECTSI6.030e-14597.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2414976..2420646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1095
Hectar predicted targeting categoryother localisation
Exons9
Cds size696
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.653.1prot_Ecto-sp6_S_contig10.653.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2417927..2420646 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348716.895891-UTR-Ecto-sp6_S_contig10:2414975..24151321682348716.895891-UTR-Ecto-sp6_S_contig10:2414975..2415132Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2414976..2415132 +
1682348716.9077425-UTR-Ecto-sp6_S_contig10:2416326..24163681682348716.9077425-UTR-Ecto-sp6_S_contig10:2416326..2416368Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2416327..2416368 +
1682348716.9170487-UTR-Ecto-sp6_S_contig10:2416421..24164521682348716.9170487-UTR-Ecto-sp6_S_contig10:2416421..2416452Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2416422..2416452 +
1682348716.9262593-UTR-Ecto-sp6_S_contig10:2417027..24171861682348716.9262593-UTR-Ecto-sp6_S_contig10:2417027..2417186Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2417028..2417186 +
1682348716.9350524-UTR-Ecto-sp6_S_contig10:2417917..24179261682348716.9350524-UTR-Ecto-sp6_S_contig10:2417917..2417926Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2417918..2417926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348716.9445841-CDS-Ecto-sp6_S_contig10:2417926..24180621682348716.9445841-CDS-Ecto-sp6_S_contig10:2417926..2418062Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2417927..2418062 +
1682348716.9539337-CDS-Ecto-sp6_S_contig10:2418565..24186371682348716.9539337-CDS-Ecto-sp6_S_contig10:2418565..2418637Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2418566..2418637 +
1682348716.9629319-CDS-Ecto-sp6_S_contig10:2419095..24193131682348716.9629319-CDS-Ecto-sp6_S_contig10:2419095..2419313Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2419096..2419313 +
1682348716.971256-CDS-Ecto-sp6_S_contig10:2419916..24200271682348716.971256-CDS-Ecto-sp6_S_contig10:2419916..2420027Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2419917..2420027 +
1682348716.9798198-CDS-Ecto-sp6_S_contig10:2420487..24206461682348716.9798198-CDS-Ecto-sp6_S_contig10:2420487..2420646Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2420488..2420646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.653.1

>prot_Ecto-sp6_S_contig10.653.1 ID=prot_Ecto-sp6_S_contig10.653.1|Name=mRNA_Ecto-sp6_S_contig10.653.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=232bp
MVRAMPSPKRVGGGLPVQSEGAGGGGGDLLDLMSMDIGGDGGGAEAGSSP
ERAPEDGSSADEGDTFLAIEAAPQSAPAQAAAAAAAGAGGGTATQAKKKK
KAKSAGKKTFNLIDFDEEGEEDGGAGEEEGEGGDAEEEEEEEVAYSEGAI
GPEATVFEVVFPPGRTPNILLEESQPGNKLTVKSFPKRADGSRGTAETDG
KIEKGDFLLAVNSIRLEGLGFNDAIRVLTTQA
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mRNA from alignment at Ecto-sp6_S_contig10:2414976..2420646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.653.1 ID=mRNA_Ecto-sp6_S_contig10.653.1|Name=mRNA_Ecto-sp6_S_contig10.653.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5671bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2414976..2420646+ (Ectocarpus species6 EcLAC_371)
CGTGAGTCTATAGGGCAGCGAAGAGGCGGCAGCAATGATGCGGGATAGCA
GCGGTGGGGATTTCGCGGCGACGATCATCCCAATTACCCGGAGCCTGATA
TTCTGGGAATGCACGGAGGTCCGTAGGTGGCTGGAAGCGCTTCAGTTCGA
CGCCCAGGTATGTTTCCATGTGGTCGCGTATGGGTCGGCGGCGAGGGTCT
GTAGATTGTCGTTTAGGCGCAAGTTTTCGTGTGGAGCTTGGGTCTGGATA
CTAAATTGCATCAACACCCGATACCGCCGACTATCCCGTGTAAGACTCGA
GCTCCTTGTGCGTGTGTTGCGCCGCAGTAGATTGGAACCGCAGGTTCCAA
GGTGAAAGCATTGTAGTCGTGGGTAGAAGCAGGCAGTGTTGCTGGACCGG
CTCTAAGGGAAGAGATTAGACGTTCCGACAGTTAATCCGGTTCCCAGAAC
AAATCCCCTTACATACGAACGAGCTGAGGCTGTGTGGGTGGCGGTTGCTT
CGTGATGAGGGCACAGGAAGCGCAACAAGCAACAGATGAAGGCATCCACA
CGATTTCCATACATATGTTATAGAGAACACAGCTGACAGCAGTCCTTGGT
ATGTTTCAGCAACAATAATTCCGTTTTGCACTGCTTGCAACAAACAAAGG
CTGCCCACCATCTCGCATCATGTTTTATGCTCAGGGTACGGCGGTGCTCG
GGGTTCAAAGTTGCACCAATTTCGCTGTCTCACTCTTTGTCATCAGTCGG
ATACGATGCAGGGACCCTACTATATTAGGCGGTGGGCTTTAGTAGTACAT
GGGTGGGCTGCTGCCCAAAAGAACGGCACTGCTGGACACTCGTCCCGGTT
GCGTTCCCGTTACCGTATATGACACAAGATAACACACCCCCTGGCCCGAT
TTTCAAAGATCGATTACTCGACGACGAAAAGGATAAATAAACGAAATCAT
ACATTTTCTAAAAGCTCTCAATGAGACGGTTCCAACGCCGCCATTTTCGG
CGCTGTGAGTCTTCCTGCTGTTGAGAAATCGATCTTTGAAAATCGGTCAA
GGGGGTGTGTTATCTTGTGTCATGTACGGTAGTTATGTAGGATTCATCAG
CAGCTCTTATTGCACCGCCGGTGGTAAGGAAAGTAACATGACGTCTCTTA
TCTGTTTTCCTGGCGCGTCTGGGGCTCCCAACTCTCGTAGTCTGTCGCCG
TTGTCAAGCCGGCTTCACCCGCTGTGCCACTCTCATATTATCGGTACACC
GAATTTTTGTTGGTTTACGCGGCCCTGATCTGCGATTTGGTTTCCTCCCC
TGTCGACATCATTGATAAAGATTGTACCATGTTTGTTCTCTCGTGTGGCA
GACGCTTTCCGCGGTGTTTGAGAAGCGAGTTAGCGGCGCCAACCTGATCT
CCATGATCAACAGCGACCGCCTGGGCGAGCTTGGCATCACGAGGTTCACG
AGGGCACAGCTCTTGTGGAACCTTAAGGCACGTTTAGAAGCTTGTTCGTG
TCAGGACTCCTTACGCACACCTTTGGACACAATTGTATCTATAACTCGTA
TTGTAGTATTTCTTCGCATCAGACTCCTTTGCCCAATACCCGAAGCGCTC
AGACCGTGTATGTTTCTATCTACAGACATGGTCGGCAACGATTGGCACGC
TCACGTTGCAGACAAAGCTTTGAAGCGATTGGCAGACGCACGAGGTTGGG
TTACCTTCCTCAATTTGTGACACGAGGATGATGCGTCCGAACGTATATGG
GCGAGGTGTACCTTTCTTGGAGGTTGCGCGGCTGATAGGGGGCAGGTTGC
CGATGGTAGTACAAGGTGCACCCTTTCTTGGTGGTTGGTGCGCTGCTAAC
AAGCCGGGTAGGGGTCAAGCTGACGATGGCGGTGCAAGGTGTACCATTTC
TTGGTGGTTGGTGTGCAGATTGGCGCTATCAATGGAATAGATGCGACGAG
AACACGGTCAAGCTTGACGTTTCGATTCGATGCGACACGCCGCATTGGCG
CGCCCCCTGCCCCAACCGATGCCATCCCATTGGTCATTTCCTTGCCAATC
AGCGACGAATCGACAAGGGTGACCAGAAGGCGGGTACAGCCGTCGACCCG
ACCGTGTTTCTGGGCGTGGAGGAGCGGCTGGAGGAGCTGGAGCAGGGGGG
CGGTGGCGGTGGAGGAAACGCGAGCTACAGGCCTTACAGCGACAACCCCG
ACAGCGCCTCGGTAAGAGTCACTCTCTATTTTCAGCCTCCATTTTTGAGT
GCAGTAGTGGTGCCGATATATCGCGGTCCCGAGTAGCCCGATTCCCGATA
CGTATCGCGGAAACAATTCCTGGGTACAACAACCTCGCCTACTACAGCAG
TCGTCTGATATAAGAGGGTACCTTTTAAGAGGGGGCTCCGATATAAGAGG
GTCCAAATCGGTTGCCACGACTTCGACCCTCAATTCGGTACAAGAGGGGG
CTTCGATATATGAGGGGGTGTCGAGCCATTGTCACACCACCCTCTTACAA
AGGAGTCACGACTGTACCTAAATTGAGGTACCTTCCCCCAATAGCGCGGG
TCCCGATATAGCGCGGTGATTTTTTTGCTGTCACTTGCCGCGATGTATCG
AGTACCACCCACTACTGCTGTACCTCGTGGAATGTCCGTGCCGGGTTTAT
CACGTGCCTTGGGCCGGGGCAAGTGCAGCTCACGAAGCACCAATGGCATG
AAGTGAACGGTACTGCATGTGTGGCGTTTGCACTGCTTGCTGTCCCCCGA
GCCTAGGGAGACAGAGTGGCTGGCGGCGCCATTGGCGATTTAGCGTGTGG
TGCTTTGTGGCCATCAGAGGGCATGGTCTTGAATCCAGCTCGTCGTTGTC
GGGGCAGTGCTTGTCCCGAATGCACCCGTGGTGGATGTCATGTAACTTTT
TTGGCGCCCCTCCCCCCTTGTGTGCTGTTTCCGTCACAACAGCAGCAGCA
AATGGTGCGGGCAATGCCCTCCCCGAAAAGGGTCGGGGGAGGCTTACCCG
TGCAGTCGGAGGGGGCAGGCGGCGGCGGGGGGGATTTACTGGACTTGATG
TCTATGGACATTGGCGGCGACGGCGGGGGCGCGGAGGGTGAGAGAGGCTA
TGTAGAAAGCTTTTACCCGTTTTGTTTTTTGCGCGTGCGGGATTATTTTG
ACGTTTCCGCATATCGGCCTTCGTCACTCGAAATGACTTTCGTACAACAT
TTGTGATGCCGTCGCTGGCTACGTCTGTACATAGGGTACAACAGCAGTCT
TTTCTTATTTTTCTGTATTCGATGATCAATCCCGGACACATTGCTCAAAA
TGATTGGCACTCATGGTCGTGCTCACTTGGTCATGAGCTCTTGTATTATC
TTGGTGCGACTTCTTTTTTTTTTTCTGGTACGTTACAGCTCATTCGGCGC
CATTTCTCCTACAGGGTTCCTGCACCTACGTGTACTCTTGCTGGGGGTAG
TGAAAAAAAAAACACACGACAACTGCTGCGCCTTCTTTCGAGAACAATAG
CAACAGCACAGTCACACCAACAATGGAAACAACAAGATCGCTCTGCCGTC
TTCTGCGTCAAAAATACCTGTCCGTGCACGAAAATGTAAGCAGGTTCATC
GCCAGAAAGAGCACCTGAGGACGGGTCTAGCGCCGATGAAGGGGACACCT
TCCTTGCCATAGGTAAGCGGGGGGGAGTGTTCGATTTTCGTGATACTGCT
GTGACCCCGGGTCAACCTGCATGCCCGGACGGAACACCTTGATAATCTTC
TGGGAAAATTGCTTGGGATGGGATGAAGCAAGCGTGGGTAAACGTATTGT
AGAGACAGAAATCAGCCTGCTCTGAAATCACTGGGAACTGGTGTTGGCCC
TCTCTCTTAAACGATCGTGCGGTGTGATTACCCTTGTCTCCTCCCCTCTT
TGTCCATCTCCTACCCCCCCCCACCTCCACTTTCCCGTTCTTGTTGCAAG
GGGGGATGCGGGGTGGGGCTGTCAAGGACCTAACCCCCGTGCTTCCTCCT
AGGCTTTGCCTGGAATTTCAGGGAAACTCAGGGACGCACACGTGACAACG
CCCCGCCCCTGCCCACCTTCATGTTTCTACCCCCCCCCCCCTATTGTCGC
GTTCTTCCTTCGCTTCGTAGAGGCGGCGCCCCAGTCTGCCCCCGCACAgg
cGGCGGCGGCGGCGGCTGCGGGAGCAGGAGGAGGAACTGCAACCCAAGCG
AAGAAGAAGAAGAAGGCGAAGTCGGCGGGGAAGAAGACGTTCAACCTCAT
CGACTTCGACGAGGAGGGGGAGGAGGACGGGGGTGCGGGCGAGGAGGAGG
GAGAGGGGGGTGACGCAGAGGAAGAGGAGGAGGAAGAGGTGCGGTTGGTT
GACACATCACCATCACGTGATTTTTTCCATTATTTTTGTTTTGGTTCATG
TTGTTCTTTTTATTCGTTGGACCAATCATCGCCGCCGCTGCAAGTGTTGG
TTGCTATTCGGCTACTAAGGGGCTCACGGATATGTGACGCGCATATGTAT
ATATGGCACACGCCTCCTCCTGCTTACCTCTCAGGCAGGGAGGGCAATCT
GCCACGGGCTCTTACTCGCCCTAGAACCGGAAGACCGTGTCTATGCTGTG
GGCCACATTGCCTTCCATAACCCCTTCTTGTTTGCCCCCCCTCTCTGCCC
ACGGTCCGTGATCCATGAGCTGACCCCCCCCGATCGTGGTCACAAACCAA
GAAAGACACACGGTAGGAACGGAACAGCCAATATCATCGGTGCACCAGCT
GTGCGCTTACAACGTCCCGTCCTTTGTGTAGATCTTTCTTCGCCCTCGCG
CTTGGGGACGACCCTCTTGCGAACTGGACGACTTGCGCCCCCCATCTACG
CGAACTGCCATGATGGAGATGATGAGTAGTTGAAACAGACGTCGTCGTTA
ACCTTTTTTTTTTTTTTTTTTGTGGTGGCGTGATGGCGAAGGTGGCATAC
TCTGAGGGGGCAATCGGGCCGGAGGCTACCGTGTTTGAGGTGGTCTTCCC
GCCGGGACGCACGCCGAACATTCTCTTGGAGGAGAGCCAGCCGGGCAACA
AGGTGAGTTTTATCATAGTATGTTTTCGGTTATCTGTTTAGAATTCTTCG
TAGCATACTGCATGGCGTTTTCGTTGTTTGTTCGAGTGGAAAACGGGTAT
GTTGGGTCCTGTGATATATGTTGTTAGATTATGTTTGTATGCATAAAATG
CTGAATACAGTTTTCGTTGTTTCTGCTTGTTTTTCGTTCGATTGGAAAAT
AAAAATTGGGGTGGCTGGCAGAATTTCATGTACACATCTGTATCCTGAAT
CACTGGCCCGTGTCTGGAGTCTGACTCCCTCAAGGCATGCATGCATCAAA
GTTTGTAATACTTTTTTTGTACCCGGTGTTCTTTAGTATATGTTCAAGTC
CGTTTGCTTGTGTCTGAAGTATATGTTCATGTTTTGCCGGTGTGCGATAA
TCCTTGAATCCATTAGTTTCGGTCGGGCCTTCAACAGTTAATTTTTTTGT
TTATTGTGGCAGCTGACGGTGAAGTCTTTCCCGAAGAGGGCGGACGGCAG
CAGGGGCACCGCGGAGACTGACGGTAAGATAGAGAAGGGCGACTTCTTGC
TGGCCGTCAACAGCATCCGACTGGAGGGCTTGGGCTTCAACGACGCCATC
AGGGTGCTCACAACGCAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2414976..2420646+

>mRNA_Ecto-sp6_S_contig10.653.1 ID=mRNA_Ecto-sp6_S_contig10.653.1|Name=mRNA_Ecto-sp6_S_contig10.653.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2414976..2420646+ (Ectocarpus species6 EcLAC_371)
ATGGTGCGGGCAATGCCCTCCCCGAAAAGGGTCGGGGGAGGCTTACCCGT
GCAGTCGGAGGGGGCAGGCGGCGGCGGGGGGGATTTACTGGACTTGATGT
CTATGGACATTGGCGGCGACGGCGGGGGCGCGGAGGCAGGTTCATCGCCA
GAAAGAGCACCTGAGGACGGGTCTAGCGCCGATGAAGGGGACACCTTCCT
TGCCATAGAGGCGGCGCCCCAGTCTGCCCCCGCACAggcGGCGGCGGCGG
CGGCTGCGGGAGCAGGAGGAGGAACTGCAACCCAAGCGAAGAAGAAGAAG
AAGGCGAAGTCGGCGGGGAAGAAGACGTTCAACCTCATCGACTTCGACGA
GGAGGGGGAGGAGGACGGGGGTGCGGGCGAGGAGGAGGGAGAGGGGGGTG
ACGCAGAGGAAGAGGAGGAGGAAGAGGTGGCATACTCTGAGGGGGCAATC
GGGCCGGAGGCTACCGTGTTTGAGGTGGTCTTCCCGCCGGGACGCACGCC
GAACATTCTCTTGGAGGAGAGCCAGCCGGGCAACAAGCTGACGGTGAAGT
CTTTCCCGAAGAGGGCGGACGGCAGCAGGGGCACCGCGGAGACTGACGGT
AAGATAGAGAAGGGCGACTTCTTGCTGGCCGTCAACAGCATCCGACTGGA
GGGCTTGGGCTTCAACGACGCCATCAGGGTGCTCACAACGCAGGCA
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