mRNA_Ecto-sp6_S_contig10.652.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.652.1
Unique NamemRNA_Ecto-sp6_S_contig10.652.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.652.1 vs. uniprot
Match: D7G8V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V7_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 5.210e-47
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 2 
Query:   35 MMRDSSGGDFAATIIPITRSLIFWECTEVRRWLEALQFDAQTLSAVFEKRVSGANLISMINSDRLGELGITRFTRAQLLWNLK 283
            MMRDSSGGDFAAT+IPITRSLIFWECTEVRRWLEALQFD+QTLSAVFEKRVSGANLISM+NSDRLGELGITR TRAQLLWNLK
Sbjct:    1 MMRDSSGGDFAATVIPITRSLIFWECTEVRRWLEALQFDSQTLSAVFEKRVSGANLISMVNSDRLGELGITRLTRAQLLWNLK 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8V7_ECTSI5.210e-4795.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2414976..2416455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size287
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348717.0067012-UTR-Ecto-sp6_S_contig10:2414975..24150091682348717.0067012-UTR-Ecto-sp6_S_contig10:2414975..2415009Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2414976..2415009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348717.0171113-CDS-Ecto-sp6_S_contig10:2415009..24151321682348717.0171113-CDS-Ecto-sp6_S_contig10:2415009..2415132Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2415010..2415132 +
1682348717.0265331-CDS-Ecto-sp6_S_contig10:2416326..24164551682348717.0265331-CDS-Ecto-sp6_S_contig10:2416326..2416455Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2416327..2416455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.652.1prot_Ecto-sp6_S_contig10.652.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2415010..2416455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.652.1

>prot_Ecto-sp6_S_contig10.652.1 ID=prot_Ecto-sp6_S_contig10.652.1|Name=mRNA_Ecto-sp6_S_contig10.652.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=84bp
MMRDSSGGDFAATIIPITRSLIFWECTEVRRWLEALQFDAQTLSAVFEKR
VSGANLISMINSDRLGELGITRFTRAQLLWNLKA
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mRNA from alignment at Ecto-sp6_S_contig10:2414976..2416455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.652.1 ID=mRNA_Ecto-sp6_S_contig10.652.1|Name=mRNA_Ecto-sp6_S_contig10.652.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1480bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2414976..2416455+ (Ectocarpus species6 EcLAC_371)
CGTGAGTCTATAGGGCAGCGAAGAGGCGGCAGCAATGATGCGGGATAGCA
GCGGTGGGGATTTCGCGGCGACGATCATCCCAATTACCCGGAGCCTGATA
TTCTGGGAATGCACGGAGGTCCGTAGGTGGCTGGAAGCGCTTCAGTTCGA
CGCCCAGGTATGTTTCCATGTGGTCGCGTATGGGTCGGCGGCGAGGGTCT
GTAGATTGTCGTTTAGGCGCAAGTTTTCGTGTGGAGCTTGGGTCTGGATA
CTAAATTGCATCAACACCCGATACCGCCGACTATCCCGTGTAAGACTCGA
GCTCCTTGTGCGTGTGTTGCGCCGCAGTAGATTGGAACCGCAGGTTCCAA
GGTGAAAGCATTGTAGTCGTGGGTAGAAGCAGGCAGTGTTGCTGGACCGG
CTCTAAGGGAAGAGATTAGACGTTCCGACAGTTAATCCGGTTCCCAGAAC
AAATCCCCTTACATACGAACGAGCTGAGGCTGTGTGGGTGGCGGTTGCTT
CGTGATGAGGGCACAGGAAGCGCAACAAGCAACAGATGAAGGCATCCACA
CGATTTCCATACATATGTTATAGAGAACACAGCTGACAGCAGTCCTTGGT
ATGTTTCAGCAACAATAATTCCGTTTTGCACTGCTTGCAACAAACAAAGG
CTGCCCACCATCTCGCATCATGTTTTATGCTCAGGGTACGGCGGTGCTCG
GGGTTCAAAGTTGCACCAATTTCGCTGTCTCACTCTTTGTCATCAGTCGG
ATACGATGCAGGGACCCTACTATATTAGGCGGTGGGCTTTAGTAGTACAT
GGGTGGGCTGCTGCCCAAAAGAACGGCACTGCTGGACACTCGTCCCGGTT
GCGTTCCCGTTACCGTATATGACACAAGATAACACACCCCCTGGCCCGAT
TTTCAAAGATCGATTACTCGACGACGAAAAGGATAAATAAACGAAATCAT
ACATTTTCTAAAAGCTCTCAATGAGACGGTTCCAACGCCGCCATTTTCGG
CGCTGTGAGTCTTCCTGCTGTTGAGAAATCGATCTTTGAAAATCGGTCAA
GGGGGTGTGTTATCTTGTGTCATGTACGGTAGTTATGTAGGATTCATCAG
CAGCTCTTATTGCACCGCCGGTGGTAAGGAAAGTAACATGACGTCTCTTA
TCTGTTTTCCTGGCGCGTCTGGGGCTCCCAACTCTCGTAGTCTGTCGCCG
TTGTCAAGCCGGCTTCACCCGCTGTGCCACTCTCATATTATCGGTACACC
GAATTTTTGTTGGTTTACGCGGCCCTGATCTGCGATTTGGTTTCCTCCCC
TGTCGACATCATTGATAAAGATTGTACCATGTTTGTTCTCTCGTGTGGCA
GACGCTTTCCGCGGTGTTTGAGAAGCGAGTTAGCGGCGCCAACCTGATCT
CCATGATCAACAGCGACCGCCTGGGCGAGCTTGGCATCACGAGGTTCACG
AGGGCACAGCTCTTGTGGAACCTTAAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2414976..2416455+

>mRNA_Ecto-sp6_S_contig10.652.1 ID=mRNA_Ecto-sp6_S_contig10.652.1|Name=mRNA_Ecto-sp6_S_contig10.652.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2414976..2416455+ (Ectocarpus species6 EcLAC_371)
ATGATGCGGGATAGCAGCGGTGGGGATTTCGCGGCGACGATCATCCCAAT
TACCCGGAGCCTGATATTCTGGGAATGCACGGAGGTCCGTAGGTGGCTGG
AAGCGCTTCAGTTCGACGCCCAGACGCTTTCCGCGGTGTTTGAGAAGCGA
GTTAGCGGCGCCAACCTGATCTCCATGATCAACAGCGACCGCCTGGGCGA
GCTTGGCATCACGAGGTTCACGAGGGCACAGCTCTTGTGGAACCTTAAGG
CA
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