mRNA_Ecto-sp6_S_contig10.639.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.639.1
Unique NamemRNA_Ecto-sp6_S_contig10.639.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 516 bits (1328), Expect = 2.340e-178
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 441 bits (1135), Expect = 4.150e-149
Identity = 211/250 (84.40%), Postives = 231/250 (92.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKVIRGQRKGKG +F SHT+ RKG VK RKLDYAERHGY+KGVVK ++HEPGRGAPLA V F+NPY+FK+D EL+VAVEGMYSG FIYCGKKA LT+GNIMPV +MPEGTVC +IEA  GDRGTFARCSGDYAV+ISHDE+KGTS++RLPSGSKKTI S CRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRLASAG+KVGLIAARRTGRLRGI+
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIK 250
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 441 bits (1134), Expect = 5.880e-149
Identity = 207/254 (81.50%), Postives = 235/254 (92.52%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIRG RKG+G +FTSHTRLRKGPVKLRKLDYAERHGYIKGVVK++IHEP RGAP+AK+QFQNPY++K+DNELIVA EGMY+G FIYCGKKA LTVGNI+PV SMPEG+V  ++E++ GDRG+ ARCSGDYAV+++HDE+KGT+K+RLPSGSKKTI S+CRAMVGI+AGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RLASAGQKVGLIAARRTGRLRGI+   E
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 413 bits (1061), Expect = 5.820e-138
Identity = 193/250 (77.20%), Postives = 221/250 (88.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKVIRG RKGKG IFT+HTRLRKGPVKLRK DYAE+ GY+KGVVK ++HE GRGAP+AKVQFQN Y+F+RDNEL VA EG+Y G FIYCG KA L VGN++P+ ++PEGTV  + EA+ GDRG FARCSGDYAV+++HDE+ GT+KLRLPSG KKT+ S CRAM+GIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLK 250
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 411 bits (1056), Expect = 3.420e-137
Identity = 187/250 (74.80%), Postives = 226/250 (90.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKV+RG RKGKG +F SHTRLRKGP KLR+LD++ER GY+KG+VK+++HEPGRGAPLA++QFQNPYK+++DNEL+V  EGMYSGQFI+CGKKA L+VGNI+P+  +PEGTV  ++E+ +GDRG   + SG Y V+I+ DE+KGTS++RLPSG+KKT+S+ CRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 401 bits (1031), Expect = 3.400e-133
Identity = 190/254 (74.80%), Postives = 218/254 (85.83%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKV RGQRKGKG IF SHTRLR G VK R LDYAER G+ KGV+KD +HEPGRGAP+AKVQF N Y++KRDN L VAVEGMY+GQF+YCGKKA LTVGNI+P+ +MPEGT+  +IEAK GDRG  A+CSGDYAV+++HDE+KGT+++RLPSGSKKT+S+ CRA VGIVAGGGRTDKP+LKAGRA+HK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R   AG+K GLIAARRTGRL G +   E
Sbjct:   20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAGKKVIDE 273
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 396 bits (1018), Expect = 1.740e-131
Identity = 185/254 (72.83%), Postives = 222/254 (87.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIR  RKG GGIF SHT+L K PVKLRKLDYAE+HGYIKGVVK+++HE GRGAP+A+VQF+N Y+FKRD E  VAVEG+YSGQFI+ GKKA+L +GN++P+  +PEGTV S++EA+ GDRG+FAR SG YAV+++ DE++GT+K+RLPSG+KKT+SS  R ++GI+AGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A AG+KVGL+AARRTGRLRGI+   E
Sbjct:    1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 395 bits (1015), Expect = 4.760e-131
Identity = 182/255 (71.37%), Postives = 222/255 (87.06%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR-TEKE 762
            MG+VIRGQRKG GGIF SH + RKG    R  DY ER GYIKGV+K++IH+PGRGAPLA+V F++PYK++ ++EL++A EGMY+G FIY GKKA++ VGNI+P+  +PEGT+  ++EA++GD+G FARCSGDYAV+++HDE+KG +K+RLPSGSKKTI S CRAMVG+VAGGGRTDKP+LKAGRAYHK+RVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST  R   AG+KVGLIAARRTGRLRGI+ T+K+
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDKD 255
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BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD)

HSP 1 Score: 394 bits (1011), Expect = 1.900e-130
Identity = 181/250 (72.40%), Postives = 221/250 (88.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MG+VIRGQRKG GGIF SHT  R+G    R LDY ERHGYIKGVVK++IH+ GRGAPLA+V +++PY++K ++EL++A EGMY+GQFIY G KA++TVGNI+P+ ++PEGT+  ++EA+VGDRG+FAR SGDYAV+++HDE+KG +KLRLPSGSKKT+ S CRAM+G+VAGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A +G+KVGLIAARRTGRLRGI+
Sbjct:    1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIK 250
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA)

HSP 1 Score: 393 bits (1010), Expect = 2.890e-130
Identity = 181/250 (72.40%), Postives = 217/250 (86.80%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKV++  RKGKG +F SHTRLRKG V++R LD+ ER GYIKG+VKD+IHEPGRGAPLAKVQF N Y++K+DN L+VA EGMY+GQFI+CGKKA L VGNI+P+  +PEGTV  ++E   GDRG   + SG Y V+I+ DE+KGT+++RLPSG+KKT+S+ CRAMVGIVAGGGRTDKP+LKAGRAYHK+RVKRNEWP +RGVA NPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U3_ECTSI2.340e-178100.00Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7S2V227_9STRA4.150e-14984.40Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A835ZD66_9STRA5.880e-14981.50Translation protein SH3-like domain-containing pro... [more]
F0YEL9_AURAN5.820e-13877.20Ribosomal_L2_C domain-containing protein n=1 Tax=A... [more]
A0A7R9UAP5_9STRA3.420e-13774.80Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WUG0_9STRA3.400e-13374.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CPH3_NANGC1.740e-13172.83Large subunit ribosomal protein L8e n=1 Tax=Nannoc... [more]
A0A418F530_9STRA4.760e-13171.37Ribosomal_L2_C domain-containing protein n=14 Tax=... [more]
K3X5U7_GLOUD1.900e-13072.40Ribosomal_L2_C domain-containing protein n=5 Tax=E... [more]
A0A7S1U069_9STRA2.890e-13072.40Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2274701..2278495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score517.3
Seed ortholog evalue4e-144
Seed eggNOG ortholog2880.D7G8U3
Preferred nameRPL8
Model size2009
KEGG koko:K02938,ko:K09228
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904,GO:1990932
Exons3
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0090@1,KOG2309@2759
Ec32 ortholog descriptionRibosomal protein L2, C-terminal
Ec32 orthologEc-15_004240.1
Cds size765
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348715.4939115-CDS-Ecto-sp6_S_contig10:2274700..22749801682348715.4939115-CDS-Ecto-sp6_S_contig10:2274700..2274980Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2274701..2274980 +
1682348715.507557-CDS-Ecto-sp6_S_contig10:2275725..22760081682348715.507557-CDS-Ecto-sp6_S_contig10:2275725..2276008Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2275726..2276008 +
1682348715.5155964-CDS-Ecto-sp6_S_contig10:2277049..22772511682348715.5155964-CDS-Ecto-sp6_S_contig10:2277049..2277251Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2277050..2277251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348715.5233634-UTR-Ecto-sp6_S_contig10:2277251..22784951682348715.5233634-UTR-Ecto-sp6_S_contig10:2277251..2278495Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2277252..2278495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.639.1prot_Ecto-sp6_S_contig10.639.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2274701..2277251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.639.1

>prot_Ecto-sp6_S_contig10.639.1 ID=prot_Ecto-sp6_S_contig10.639.1|Name=mRNA_Ecto-sp6_S_contig10.639.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=255bp
MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIH
EPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGN
IMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRL
PSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVR
GVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR
TEKE*
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mRNA from alignment at Ecto-sp6_S_contig10:2274701..2278495+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.639.1 ID=mRNA_Ecto-sp6_S_contig10.639.1|Name=mRNA_Ecto-sp6_S_contig10.639.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3795bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2274701..2278495+ (Ectocarpus species6 EcLAC_371)
ATGGGTAAGGTTATCCGTGGGCAGAGGAAGGGTAAGGGAGGTATCTTCAC
CTCCCACACGCGCCTCCGCAAGGGGCCCGTGAAGCTCCGCAAGCTCGACT
ACGCGGAGCGCCACGGCTACATCAAGGGCGTCGTCAAGGACCTCATCCAC
GAGCCCGGAAGGGGCGCGCCGCTGGCCAAGGTCCAGTTCCAGAACCCCTA
CAAGTTCAAGAGGGACAACGAGCTGATCGTGGCTGTCGAGGGCATGTACT
CCGGGCAGTTCATCTACTGCGGGAAGAAGGGTACGCGCAAGTTCTTACCC
GCACACAACGCGCGCCGTGGAAAATTTTGTGTGGGCACGAGAGAACGGGT
TTGATGGGTGGCTCCCGATAACAGCCGCAGCAGCAGCATCACCTATACGA
CGCAAGCGCTTTGATGGGTGGCTCCCGATGACAGCCGGTTCGCCTGGGGG
TGTGCTTTGTGTTTGGGAAACACAGCCCCCCCTTCGCACGGCGGCAAAGC
GGCGGTCCTCCTCTGATGACCTCTTGATTCACCCCCTTGCTCGCCTCGTC
TGTGCTTCCTCTCTATTTTCGAGATTTTGTTTCGAAGGAGAGAGGTACAC
AGGGCCAGAGCAAAGCAAGGGGTGTGTTGTGAGAGTGTCGTCGGTTGGAC
CGCATGCACTTTGATGGATGGCGTCCGAAAACAGCCACGGCAGCGTTCTG
CTTGCTTTTTGTTGTACAGCTGTTTCAGAATAAGTAGAGAGCACGTAAGC
AAGTCAGTAGATGCGTACACATGATTTGAAAAGATCTGCGCGTGGATGTG
TGGATTGTGTTTTTGTGTAGACTCGTTGGTGGCGCCGCGCATGCCTTTTT
CTTTTCGATGAACCAGCTGTGTGGCGACATGTCTCGATTTTAGTTAGCAG
TAGGCATTATTCCGCATGACACAACTCTGAATGCGTGTTTAGACCTGTGT
ACCGCCGCCCCCCTCTTACCCGACCCCACACCCGTGCTTCTTTCTTTGAT
TCGAACCGGAACAAAAATGGCACAGCCTCCCTCACCGTCGGCAACATCAT
GCCCGTGCGCTCCATGCCCGAGGGTACCGTCTGCTCCTCCATCGAGGCCA
AGGTCGGCGACCGCGGCACCTTCGCCCGCTGCTCCGGCGACTACGCCGTC
CTCATCTCGCACGACGAGGAGAAGGGCACCTCCAAGCTCCGCCTGCCCTC
GGGCTCGAAGAAGACCATCAGCTCGGACTGCCGCGCCATGGTCGGCATCG
TCGCCGGCGGCGGGAGGACCGACAAGCCCATGCTCAAGGCCGGGCGCGCT
TACCACAAGTGAGTCTCGTTTTTTCTTATTCTTTCACGAAACAAACACGA
CGTCATTGTTTCGACCGAAGATATTCTCGCACTGGTAGTAGTTGTAGTTT
TTCTGTGCCTACATGTACAAGTATGCATATATTTTCTAGAAACCACCAGA
GGTCATTTTCTTGTTTTCACGTTGGCCCTTTTTTTTTTTCAAATCAAGAG
GGAACGGTCATTCTTGTAGTGTTTTTCGTTGTGGCCCGCTTGGGTCACAC
AAGTGGCTGTTGTGGAAGGTGTTCGGGGAGTGGCGTCTGTGCGCGAACCT
TTTTTATTTGTGCAACGCTGTTGGTAGCGTCAAACGTCTCGGGTGTTTTT
GTTTTTGTTGAGGGTTCTTGTAGGGTGTGGTGAGTTTGGAGTGCAGACCG
GTTTGGTTCGGTCGTTTCGCACACGCCGGTAGCCAGTCGCGCTCTCGGAT
TCTCGATGCAACTTTGTTTTTCTTGTGTGGCTTCGAAATCGTCATTCTCA
CCCCTCTGCCACATGCCTGTTGCAGTTGGTGCTTCTCCAAATACTCTCAG
CGCAGTTTTTTTGTCGCTTCGAAGGGTCCCGTCCATTGTAGAGTAGACCC
CGCTCTGCCGGTTCGAGAAATTCGCAGAGTACCCAGCACCTCTTGTTTTG
TAGCTGCGCTAATCTCAGGTGTTGAGGTATGTCGAAGAAGTTTTAACAAT
TTTCCCGAAACACGTGCAGATTTGGAGTAAATTTTCGACGATTAAACGAA
GATTCTATCAACGATGGGTCTACCAATGTATATCCGGTGGTGATTGAATC
TTTTTCATATTATAATATTGATAACCCCGATGTGCATCTGGAGACTTGAA
TAGCCAAAGTATTCGTATGCGTTCCGAGGCCTTTAGCCCGAACGGGTTGT
AGGACTTGATTTCTTAGGTGAGACCCCACCCTACCTCATGAAAAGGATCT
CTGCATGTACAATTTCGCCGCCTTTTTCTTGCACTTGTCGATGTTCTTAC
GATGGTTCCCCTGCTTTCATTTCGCCTTGTGTCCGATTTTTTTTTCCAGG
TTCCGCGTCAAGCGCAACGAGTGGCCCCACGTGCGTGGTGTGGCGATGAA
CCCCGTGGAGCACCCCTTCGGTGGTGGTAACCACCAGCACATCGGGCACC
CCTCGACGGCCAACCGCCTCGCCTCGGCCGGTCAGAAGGTCGGTCTCATC
GCCGCCCGCCGCACCGGCCGCCTGAGGGGCATCCGCACGGAGAAGGAATA
AGCGCTGTTTCCTGACTTGATGTGACGGGAGACCGGTTCTGTTCTTGAAC
TTTGAACGCGCTCCGGAGAAAGGAGGACGTCTCCAGCTGAATGTTATCAC
GGCGTTTTTTGTGCTTTTTTGAATTCCTGATTTCACCCCCCCCCCCTCCC
CCCGAGTGGTTTTCTCTCGGTTGCGGTAGGATGGACTGCAGTCGTTGGTA
GCCGATTGGCCGTCTAGGATGGCAGAGGGTGTCGTTGTGACTGCTGCTCT
TTGCGAGTTTCATGTGTGTCCCATTGTGGCGCATACGAGAATGGCGACAG
CACGGTAGACGGTTTCTTTCCAAGGAGTTGTTGGGGAGTTTCGGTGTTTT
CAGAGACGTTCGTGTTATTTTTTCAGTTGGTGGCTTTCTTTGTCTCAGAG
CTTGTGCTCTTGTTCATTTTGTGGGATCACTTCTTTCGCTAGCCACGGGA
GAGGGTATGCTCTGTTCGCAATCTGTCGAAGCACGACACAAAAAAAAAGT
TTAAAAACCTCAAGGAGAAACGCTTCGCCTCTTGGCGCGGTTCAACGACT
AGTGATCTATGTCCTCAAACCACACTATCGTAGTGGCTGGGTCATGTCTG
CCGGTGTATGGCAGAAGCGTGGATGGACGTTGAAAGAATACTCTCATCAA
CGTTCGCCATGATGAGCGATTCTGTCTTGCGTGCTTGGGGCATTCCACCA
CCCAGAGCCGCTTTCTTATCGAGGCAGCACCGGGGAATTGTACCCCATTT
CCACTATTTTCTGTGGATGCCCTACATCAGTATTCTCTTTTTGCCTCTCG
CTCGGGCTGTGTATTCATCGACATCGGTGTTAACCGACTCGCTAAAAGCT
GGAACTTAGGCTGACCAGGATCTAAAGGCGAGAAAATAAGTCGCCGATGA
TTGTCGCCCAAGATTGATGTTCTGTGTGCAGAGTTCTCGTGGAAGCTGGT
TGGTCAACCTTGCGCGCAATCGTCGCTAGGATTTGTATGTTTTGGTCGCA
GTTTAACCCTGGTCGTCCATGCCATCTCCTCGGTTCTACAGCCAATGAAT
AACCTCAAACATTTTAGACCATGGGCGCGTCGTACCGAGGTGCACCGGTA
TCGGTACAACAATCACAAACTCTCGAATATGCAAAAAGTGGGCAAGTCTG
CTGCGAGAGGGAGACCACGCCAACCCAACGCTTCCAAAAATGTAGCGAGG
AGGAGTGGTGATCGCCGCAAGGGGACAAAAAAAAAAGAAGAAACG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2274701..2278495+

>mRNA_Ecto-sp6_S_contig10.639.1 ID=mRNA_Ecto-sp6_S_contig10.639.1|Name=mRNA_Ecto-sp6_S_contig10.639.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2274701..2278495+ (Ectocarpus species6 EcLAC_371)
ATGGGTAAGGTTATCCGTGGGCAGAGGAAGGGTAAGGGAGGTATCTTCAC
CTCCCACACGCGCCTCCGCAAGGGGCCCGTGAAGCTCCGCAAGCTCGACT
ACGCGGAGCGCCACGGCTACATCAAGGGCGTCGTCAAGGACCTCATCCAC
GAGCCCGGAAGGGGCGCGCCGCTGGCCAAGGTCCAGTTCCAGAACCCCTA
CAAGTTCAAGAGGGACAACGAGCTGATCGTGGCTGTCGAGGGCATGTACT
CCGGGCAGTTCATCTACTGCGGGAAGAAGGCCTCCCTCACCGTCGGCAAC
ATCATGCCCGTGCGCTCCATGCCCGAGGGTACCGTCTGCTCCTCCATCGA
GGCCAAGGTCGGCGACCGCGGCACCTTCGCCCGCTGCTCCGGCGACTACG
CCGTCCTCATCTCGCACGACGAGGAGAAGGGCACCTCCAAGCTCCGCCTG
CCCTCGGGCTCGAAGAAGACCATCAGCTCGGACTGCCGCGCCATGGTCGG
CATCGTCGCCGGCGGCGGGAGGACCGACAAGCCCATGCTCAAGGCCGGGC
GCGCTTACCACAAGTTCCGCGTCAAGCGCAACGAGTGGCCCCACGTGCGT
GGTGTGGCGATGAACCCCGTGGAGCACCCCTTCGGTGGTGGTAACCACCA
GCACATCGGGCACCCCTCGACGGCCAACCGCCTCGCCTCGGCCGGTCAGA
AGGTCGGTCTCATCGCCGCCCGCCGCACCGGCCGCCTGAGGGGCATCCGC
ACGGAGAAGGAATAA
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