mRNA_Ecto-sp6_S_contig10.635.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.635.1
Unique NamemRNA_Ecto-sp6_S_contig10.635.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2217099..2218124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size411
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-15_004190.1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348714.9709625-CDS-Ecto-sp6_S_contig10:2217098..22172271682348714.9709625-CDS-Ecto-sp6_S_contig10:2217098..2217227Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2217099..2217227 -
1682348714.9815304-CDS-Ecto-sp6_S_contig10:2217842..22181241682348714.9815304-CDS-Ecto-sp6_S_contig10:2217842..2218124Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2217843..2218124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.635.1prot_Ecto-sp6_S_contig10.635.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2217099..2218124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.635.1

>prot_Ecto-sp6_S_contig10.635.1 ID=prot_Ecto-sp6_S_contig10.635.1|Name=mRNA_Ecto-sp6_S_contig10.635.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=137bp
MADSPTPPYRVPLRDRPTTVQQAVADPGTNPPLAEAPGDVQGAARRQGPE
RPDPIQRTATAATPEFKPPMSERPENIQGAALRRDIVPRRFAHQVECPGG
GDEEFQLYGEDPHAQERTTSTGEHRAEHGELHVKTRF
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mRNA from alignment at Ecto-sp6_S_contig10:2217099..2218124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.635.1 ID=mRNA_Ecto-sp6_S_contig10.635.1|Name=mRNA_Ecto-sp6_S_contig10.635.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1026bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2217099..2218124- (Ectocarpus species6 EcLAC_371)
ATGGCGGACAGCCCAACTCCGCCTTACAGAGTACCGCTGCGGGATCGGCC
AACTACTGTCCAGCAAGCAGTTGCGGATCCAGGCACCAACCCGCCCCTCG
CGGAAGCACCAGGGGATGTGCAGGGAGCAGCCCGGCGGCAAGGACCGGAA
AGGCCAGACCCAATCCAGCGGACAGCCACTGCTGCTACTCCCGAGTTCAA
GCCGCCGATGTCCGAGAGACCAGAGAACATTCAGGGAGCAGCGCTCCGTC
GAGACATAGTCCCACGGCGTTTTGCTCACCAGGTAACAACTTTTTTGTTG
TTGTGGTTTCCCCCGGATGAATTGCTTGCGCCATGCTAATGCCCTGGATT
TCCTTCTCTCTGTTGAATGGATTTCAGACGCTGCGAAGGTTTTTCAACAA
CAGGTGCTACGCGTACGAGCCACGACATCTATGAACATGTTTTTGTTCGA
TGTAGGTCGGTATTTTCAGTTTGTTGGAACGACCAAGTAGGGACCAAGGA
ATCCAAGCCGAGGTGCAGGTTCTGTGGGGAGAAGGGATCCTTCTGCCTTT
GACACACGTGAAAGGTTCTCACACTACGTGTAGGTGTTTGCTCCCCCTCT
CCTTCTCCTGTTGCCCAGACACCTGTAGTGGCCCTTACAATCCCAAGATA
CGTGGCAGAATTTTTCCGTACATGGTTTCACAAACATATCGAACATGTCG
CGACAGTATGCCGGCTGCCTCAGAGTGCTTTGGTAATTTGACAAAGTAAA
AACCTGGCTTCTGCTTGCAGTAGTACTCCAATTTGTCAAGGACCAAGAAT
TCTTTCTAGTTTTGCAATTTTCTACCCGCTCCCCACCGTGTGTGCTGCAC
TCGCCACATGGGATTATTCACCGTCTCGGCGAATCCGACCCATATAGGTT
GAATGCCCAGGCGGGGGCGATGAAGAATTTCAACTGTACGGAGAGGACCC
GCACGCACAAGAGCGGACGACGTCCACCGGCGAGCACCGAGCGGAACACG
GCGAATTGCACGTGAAAACCCGCTTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2217099..2218124-

>mRNA_Ecto-sp6_S_contig10.635.1 ID=mRNA_Ecto-sp6_S_contig10.635.1|Name=mRNA_Ecto-sp6_S_contig10.635.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2217099..2218124- (Ectocarpus species6 EcLAC_371)
ATGGCGGACAGCCCAACTCCGCCTTACAGAGTACCGCTGCGGGATCGGCC
AACTACTGTCCAGCAAGCAGTTGCGGATCCAGGCACCAACCCGCCCCTCG
CGGAAGCACCAGGGGATGTGCAGGGAGCAGCCCGGCGGCAAGGACCGGAA
AGGCCAGACCCAATCCAGCGGACAGCCACTGCTGCTACTCCCGAGTTCAA
GCCGCCGATGTCCGAGAGACCAGAGAACATTCAGGGAGCAGCGCTCCGTC
GAGACATAGTCCCACGGCGTTTTGCTCACCAGGTTGAATGCCCAGGCGGG
GGCGATGAAGAATTTCAACTGTACGGAGAGGACCCGCACGCACAAGAGCG
GACGACGTCCACCGGCGAGCACCGAGCGGAACACGGCGAATTGCACGTGA
AAACCCGCTTC
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