mRNA_Ecto-sp6_S_contig10.632.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.632.1
Unique NamemRNA_Ecto-sp6_S_contig10.632.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: D7FPA4_ECTSI (Uncharacterized protein n=4 Tax=Eukaryota TaxID=2759 RepID=D7FPA4_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 7.450e-100
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 
Query:    1 MGNETVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            MGNETVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR
Sbjct:    1 MGNETVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 146
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: A0A7S2XX35_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX35_9STRA)

HSP 1 Score: 255 bits (651), Expect = 2.280e-85
Identity = 124/146 (84.93%), Postives = 137/146 (93.84%), Query Frame = 1 
Query:    1 MGNETVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            M   + +ESVQ FGRKKTATAVAYCKRGRGLIKVNGCPIEL++P +LR+KTFEPVLLLG  RF+NVDIRVRV+GGGYT+QIYAIRQAIAKAIVA+YQKYVDEASK+EIKD+LM+YDR LLVADPRRCEPKKFGGPSARARYQKSYR
Sbjct:    1 MQKASQVESVQTFGRKKTATAVAYCKRGRGLIKVNGCPIELVQPEMLRLKTFEPVLLLGQQRFANVDIRVRVKGGGYTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILMSYDRALLVADPRRCEPKKFGGPSARARYQKSYR 146
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: A0A7R9YFZ9_9STRA (Hypothetical protein n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7R9YFZ9_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.110e-83
Identity = 118/146 (80.82%), Postives = 136/146 (93.15%), Query Frame = 1 
Query:    1 MGNETVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            M   + ++SVQVFGRKKTATAVAYCK GRGLIK+NGCPIE LEP +LR+KT+EPVLLLG  RF++VDIR+RV+GGGY++QIYAIRQAIAK+IVA+YQKYVDEASKREIKD+ +AYDR+LLVADPRRCEPKKFGGPSARARYQKSYR
Sbjct:    1 MSERSAIKSVQVFGRKKTATAVAYCKEGRGLIKINGCPIENLEPRVLRLKTYEPVLLLGNQRFADVDIRIRVKGGGYSAQIYAIRQAIAKSIVAYYQKYVDEASKREIKDIFLAYDRSLLVADPRRCEPKKFGGPSARARYQKSYR 146
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: A0A7S3ZMH9_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S3ZMH9_9STRA)

HSP 1 Score: 247 bits (630), Expect = 3.280e-82
Identity = 118/142 (83.10%), Postives = 133/142 (93.66%), Query Frame = 1 
Query:   13 TVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            + ++SVQVFGRKK ATAVAYCK+GRGLIKVNGCPIELLEP ILR+KTFEPVLLLG  RF+NVDIR+RV+GGG+T+QIYAIRQAIAK++VA+YQKYVDEASK EI+D+LM YDR LLVADPRRCE KKFGGPSARARYQKSYR
Sbjct:    2 SAIQSVQVFGRKKAATAVAYCKQGRGLIKVNGCPIELLEPEILRLKTFEPVLLLGQTRFANVDIRIRVKGGGFTAQIYAIRQAIAKSLVAYYQKYVDEASKTEIRDILMQYDRTLLVADPRRCESKKFGGPSARARYQKSYR 143
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: F0YH48_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH48_AURAN)

HSP 1 Score: 244 bits (623), Expect = 3.830e-81
Identity = 117/142 (82.39%), Postives = 133/142 (93.66%), Query Frame = 1 
Query:   13 TVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            + ++SVQVFGRKKTATAVAYCK+GRGLIKVNGCPIELLEP ILR+KTFEPVLLLG  RF+NVDIR+RV+GGG+T+QIYAIRQ+IAKA+VA+YQKYVDEASK EI+D+LM+YDR LLVAD RRCE KKFGGP ARARYQKSYR
Sbjct:    2 SAIQSVQVFGRKKTATAVAYCKQGRGLIKVNGCPIELLEPEILRLKTFEPVLLLGQHRFANVDIRIRVKGGGFTAQIYAIRQSIAKALVAYYQKYVDEASKTEIRDILMSYDRTLLVADARRCESKKFGGPGARARYQKSYR 143
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: A0A7S0J187_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J187_9EUKA)

HSP 1 Score: 243 bits (621), Expect = 8.550e-81
Identity = 114/140 (81.43%), Postives = 131/140 (93.57%), Query Frame = 1 
Query:   19 LESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            +ESVQ FGRKKTA AV+YCK+GRGLIK+NGCPIEL+EP ILR K +EP+LLLGP RF+NVDIR+RV+GGGYT+QIYAIRQAIAK++VA+YQKYVDEASKREIKD+L +YDR+LLVADPRRCEPKKFGGP ARAR QKSYR
Sbjct:    7 MESVQTFGRKKTAVAVSYCKKGRGLIKINGCPIELVEPEILRHKVYEPILLLGPDRFANVDIRIRVKGGGYTAQIYAIRQAIAKSVVAYYQKYVDEASKREIKDILTSYDRSLLVADPRRCEPKKFGGPGARARRQKSYR 146
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: H3G8T5_PHYRM (Uncharacterized protein n=30 Tax=Oomycota TaxID=4762 RepID=H3G8T5_PHYRM)

HSP 1 Score: 242 bits (617), Expect = 3.260e-80
Identity = 119/143 (83.22%), Postives = 132/143 (92.31%), Query Frame = 1 
Query:   10 ETVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            E  +ESVQVFGRKK ATAVAYCKRG GLIKVNG PIEL+EP ILRVKT+EPVLLLG  RF+NVDIR+RV+GGG+T+QIYAIRQAIAKAIVA+YQKYVDEASK+EIKD+L+AYDR LLVADPRRCE KKFGG SARAR+QKSYR
Sbjct:    2 EGKIESVQVFGRKKNATAVAYCKRGHGLIKVNGTPIELVEPEILRVKTYEPVLLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLAYDRTLLVADPRRCEAKKFGGGSARARFQKSYR 144
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: A0A7S4HKN5_9EUKA (Hypothetical protein n=2 Tax=Prymnesiaceae TaxID=418967 RepID=A0A7S4HKN5_9EUKA)

HSP 1 Score: 239 bits (609), Expect = 7.800e-79
Identity = 111/142 (78.17%), Postives = 131/142 (92.25%), Query Frame = 1 
Query:   13 TVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            T +ESVQ FGRKKTA AV+YCK+GRGLIKVNGCPIEL+EP +LR K FEP+LLLG  RF+N+DIR+RV+GGGYTSQIYAIRQAIAK++V++YQKYVDEASK+EI+++L+ YDR+LLVADPRRCEPKKFGGP ARAR QKSYR
Sbjct:   14 TAVESVQTFGRKKTAVAVSYCKKGRGLIKVNGCPIELVEPEVLRYKVFEPILLLGKERFANMDIRIRVKGGGYTSQIYAIRQAIAKSVVSYYQKYVDEASKQEIREILVQYDRSLLVADPRRCEPKKFGGPGARARRQKSYR 155
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: A0A4P9XXI0_9FUNG (40S ribosomal protein S16 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XXI0_9FUNG)

HSP 1 Score: 236 bits (602), Expect = 5.510e-78
Identity = 112/140 (80.00%), Postives = 128/140 (91.43%), Query Frame = 1 
Query:   19 LESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            +E+VQ FGRKKTATAVA+CKRG G+I+VNG PIEL+EP ILR K +EPVL+LG  RF N+DIRVRV+GGG+TSQ+YAIRQAIAKAIVAFYQK+VDEA+K+EIKD+L  YDRNLLVADPRRCEPKKFGGP ARARYQKSYR
Sbjct:    1 MEAVQTFGRKKTATAVAHCKRGNGMIRVNGSPIELVEPEILRYKVYEPVLILGEERFRNLDIRVRVKGGGHTSQVYAIRQAIAKAIVAFYQKFVDEAAKKEIKDILTTYDRNLLVADPRRCEPKKFGGPGARARYQKSYR 140
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Match: A0A2R6X4H6_MARPO (Uncharacterized protein n=2 Tax=Streptophytina TaxID=131221 RepID=A0A2R6X4H6_MARPO)

HSP 1 Score: 235 bits (600), Expect = 1.110e-77
Identity = 111/140 (79.29%), Postives = 127/140 (90.71%), Query Frame = 1 
Query:   19 LESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVKTFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYVDEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR 438
            +ESVQ FGRKKTA AV YCK+GRGLIK+NGCPIEL+EP ILR K FEP+LLLG  RF+NVD+R+RVRGGG+TSQIYAIRQ+IAKA+VA+YQKYVDE SK+EIKDLL+ YDR LLVADPRRCEPKKFGG  AR+R+QKSYR
Sbjct:    1 MESVQCFGRKKTAVAVTYCKKGRGLIKINGCPIELVEPEILRYKAFEPILLLGRQRFANVDMRIRVRGGGFTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDLLVRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPA4_ECTSI7.450e-100100.00Uncharacterized protein n=4 Tax=Eukaryota TaxID=27... [more]
A0A7S2XX35_9STRA2.280e-8584.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YFZ9_9STRA3.110e-8380.82Hypothetical protein n=2 Tax=Pinguiochrysidaceae T... [more]
A0A7S3ZMH9_9STRA3.280e-8283.10Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
F0YH48_AURAN3.830e-8182.39Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0J187_9EUKA8.550e-8181.43Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
H3G8T5_PHYRM3.260e-8083.22Uncharacterized protein n=30 Tax=Oomycota TaxID=47... [more]
A0A7S4HKN5_9EUKA7.800e-7978.17Hypothetical protein n=2 Tax=Prymnesiaceae TaxID=4... [more]
A0A4P9XXI0_9FUNG5.510e-7880.0040S ribosomal protein S16 n=1 Tax=Thamnocephalis s... [more]
A0A2R6X4H6_MARPO1.110e-7779.29Uncharacterized protein n=2 Tax=Streptophytina Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2192204..2195614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score290.4
Seed ortholog evalue4.6e-76
Seed eggNOG ortholog2880.D7FPA4
Preferred nameRPS16
Model size441
KEGG koko:K02960,ko:K02996
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001889,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006259,GO:0006310,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0030867,GO:0031090,GO:0031099,GO:0031100,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034097,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071345,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990823,GO:1990830,GO:1990904
Exons3
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0088@1,KOG1753@2759
Ec32 ortholog descriptionRibosomal protein S5 domain 2-type fold, subgroup
Ec32 orthologEc-15_004150.1
Cds size441
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348714.6899977-CDS-Ecto-sp6_S_contig10:2192203..21922511682348714.6899977-CDS-Ecto-sp6_S_contig10:2192203..2192251Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2192204..2192251 +
1682348714.7026732-CDS-Ecto-sp6_S_contig10:2194728..21949201682348714.7026732-CDS-Ecto-sp6_S_contig10:2194728..2194920Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2194729..2194920 +
1682348714.71311-CDS-Ecto-sp6_S_contig10:2195413..21956141682348714.71311-CDS-Ecto-sp6_S_contig10:2195413..2195614Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2195414..2195614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.632.1prot_Ecto-sp6_S_contig10.632.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2192204..2195614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.632.1

>prot_Ecto-sp6_S_contig10.632.1 ID=prot_Ecto-sp6_S_contig10.632.1|Name=mRNA_Ecto-sp6_S_contig10.632.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=147bp
MGNETVLESVQVFGRKKTATAVAYCKRGRGLIKVNGCPIELLEPAILRVK
TFEPVLLLGPARFSNVDIRVRVRGGGYTSQIYAIRQAIAKAIVAFYQKYV
DEASKREIKDLLMAYDRNLLVADPRRCEPKKFGGPSARARYQKSYR*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:2192204..2195614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.632.1 ID=mRNA_Ecto-sp6_S_contig10.632.1|Name=mRNA_Ecto-sp6_S_contig10.632.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3411bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2192204..2195614+ (Ectocarpus species6 EcLAC_371)
ATGGGTAACGAGACCGTTCTGGAGAGCGTGCAGGTGTTCGGTCGCAAGGT
CAGTTTGCACGACGGCACCCCTGGCGGCCCCCTTTGCGTAAAGGGGTGAG
ATTTTGTGAGAGGTAGCTGTGGGGGGCACCTGAGGAGCGACGCAATCCAT
TCGTGGCTCTGTGTGGCTGTTGCGTGCCCCCCCGTTCACCTTCACCGTGT
GGTGCCTTCTCTCTCTGAGAGAGGACAGACAACCAAAAATGTTTTTGCGT
ACAAAACAAGGGCGATCGGCTGCCAATCCTTTGATTGCGCGCCGCGCTCG
GCGGCCCCCTCTCTCATGCGAGAGGGGTGAGATGCTCAAGCTCGCCAGGG
ATACACACCCTGAGGCAAAACGAGGCCCACGAAGTTCGTGAGGCTTCGCG
CAGCTAGCTGACTTCTCAGCAGAGAGAGGGAGAGGCAGAGCTGCCGTCCC
CTCTGTTCTCCTGGACGGGTAAGGGTGCAATGGTGTGCGACGTGAATGTG
TGCTGTGTCGACGGATCGTGTGTCGGCACGGCCTTGCGTTTGTAGCCTTT
GAGTGTCGGTCTCTACTTTTCTTCACCATGCGGGGACTCAAATCGCCTGT
TGTTTGCCGGTACGCGGCTGCTGTAGCAAGCCGGCATCACACGTACTGCT
GTAGTCATGGTCTTACATCGTAGGTTTTGGGTTGCTGGcGTTTGCCTGTA
GACCCGCTGCTGTAGTGGCTGAAGCAACGGGTCTGTCTGCCTCGGTCATT
TGGCGTGCCGACTCCATTAGACTGTCGTCAAGTCCTTCCTTCAGGTTGTG
CGATTGCCGTTTCTCGTATGTAGCTGCAAGAACCCACGTTTTCGCCATCC
AGAGTGTGCTGTACACAGCAGCAGCGCGAGACTAGAACCCACCGAGTTTA
TTCCCCACACGTTCCTCCTCGTGAGCCATGATGACACTACAACGAACGCT
AACTACGTTTTGGTCGGAACCAATGATGTCGACTATCTCTGTGGTTCTGA
GTGCTCTTCGTCTGggggttgcttGGGGTGGTCGCGACTCGATTTTttta
TTGCTTCAAAATCAGCTTTTTCAGCATTTGTGCCGTTTACTCCAACCCAT
GGTCAGACAGCTGTCGATAGGGTTAGTACGATACCAGCGCATGCATTCCA
GGAGCAAGGAACACACATGGGTAGCGTTGAGATCGTTCAAGCAGCGTATT
TTTCAGTTCAAAAGCAGTGCCTTATTTCTCGAATGTCTCTCAAGGTTTTG
TCCCATGTGGACTGCTGTCAAACCTGTGGTTTGGAGAAACATGCTTGGGT
GTGCCGGTTATTGAGGGCCTGATGAGTTCAAGGGGTAAAATACAAAATAA
CCCAGTGTTTGTGTGTATGACTCTGTTTGGGTCCAGAGACGAAACCCGGA
TTGTGTCCGTCTTTGGACGGATGAAACACCGCCGTTTGTGGTGTTGGTGG
TTATACCGTCGCGATTGTGTGATGCCTCTCTTTTTGCTTCCGCCATGGAC
CGTTGTAATATCACATGCAAGGACGGCCTGTTCTTGAGCCGACGCGCGTT
CACCGCGCCGTCCTCGGTAAGATCAAAATGACAACGGTCGCGTTCCTTCG
AGTGCTGAAAGCAGCACACCTTTTTTGTTGTTTCTTCACGGCCGTCCTCC
GACCTAGCGCTCTAGGCCGCAGAAGGGGCCATGCGCTAGGTCGGAGGAGG
TCCATGAAGAGACGGACGGAAAACGTGTACTGCTGTGGGCACTCTAATGG
AGGCCACCGTTATTTTGAACGTACCAATGACAGGGCGGTGGATGCCTCGA
CCGCTGTAGTTGAGCGACCCTATCGTGTCGTGTACGTATGTGTACATCAA
CATTGCGGTGACCCGGATTTACCTGTAGGAGTCAGATCGATGATGCGGCT
GTTTACCTCGCCTTTGCATAATCATGACCGCCATTTCAATATAGCATAAT
CGATGACCACGTTTATGCATTTGACCGCGTTGGCATTTCAATGGGGGTGT
AGGGAGTTGGAAGTACTGGGTGGAAGAGCCATGATGACCTCTTTTTAACG
CTAACTACGTTGTGACTGAATCAACGATGTCGACTATCTCTGTGGTTCTG
AGAGCTCTTGCCCATCCCGCACACTTGCGTATCTCCCACTGCACCTCTTC
CCGCGCCTGAACGGTAGCATTTTTGCGTTGCGGTTTGGCGTTTACCTTGT
TGTGTTCGTCAATAATGCACAACACCATTAGGTCGTTCGTGATTCAGAAG
CCATGCATATGTACGCATCTACCCTTGCAGTGCTCAGTTTTTTCGGTCTG
TTCTTGTCGGCAAAACCCCAGCAACTGAACAATCACTAGTCAGTTTTGTG
TGTGTTTTTGCCGTTATAGACCGTCCGTGGCGATGAATCCACGAAGTCTG
TGCCATACATACCAAATGCACCGCAGGTGCTCCTCGCACCCTTCCCTCAA
TGGTTGCGCTCACGCCATGGCCCATCATCGCTCCCCCCGACACGCCCCAA
CTCGTGCATCCATCCCGTCGAGCAGAAGACCGCTACCGCCGTCGCGTACT
GCAAGCGCGGACGCGGCCTGATCAAGGTGAACGGATGCCCCATCGAGCTC
CTCGAGCCGGCCATCCTCAGGGTGAAGACCTTTGAGCCCGTTCTCCTCCT
CGGCCCCGCGAGGTTTTCCAACGTGGACATCCGCGTCCGCGTCAGGGGCG
GAGGTTACACTTCGCAGGTGAGATTATACTATATGTGGGCAAGGCGGCCT
ACTTGCCTTCCAAACAACCGAAGAAATAATTATTTTATTGTGTGCGTTTT
GTCGTGGTGCTGGTGGTAGTTGGGAGAACGACGTCGCTTTCTTGTGTGGT
GCGCGGGCATTCCTCCTGGCATGTATTTTCCAAGGAGATGTTGTGCGTCA
GTCTGCGAAAACTTTTAGGAAGGCTAAAGCGGCGCTTGTGATAGCGAGAG
TATTGTCGCATTTTTCGGTGCGTGGGCTCCGCGTCGTACATGTAGCGCGG
GGAGAAGCTTGGGCCGTTCTAGACTGAAAGAGCGCGAGAGATTCCGTTAT
AAGTGTATGTTCTTTTTCATACAACATCACTCGATCCACACGGAAACCAG
ATACAGCCCCGTGACTGGGTGTTGGTGTGTTGTTCTTTGCTCAGTCGCAC
AACTAAAGTCCAACACCTCGGGCCTCTCTTCCCCCTTTTTTGTCCCGCCC
GCACCCCCAGATCTACGCCATCCGCCAGGCAATCGCCAAGGCCATCGTGG
CGTTCTACCAGAAGTACGTGGACGAGGCCTCGAAGCGCGAGATCAAGGAC
CTCCTCATGGCCTACGACCGAAACCTTCTCGTCGCCGACCCTCGCCGCTG
CGAGCCCAAGAAGTTCGGCGGTCCCTCGGCCCGCGCGCGCTACCAGAAGT
CGTACCGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2192204..2195614+

>mRNA_Ecto-sp6_S_contig10.632.1 ID=mRNA_Ecto-sp6_S_contig10.632.1|Name=mRNA_Ecto-sp6_S_contig10.632.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2192204..2195614+ (Ectocarpus species6 EcLAC_371)
ATGGGTAACGAGACCGTTCTGGAGAGCGTGCAGGTGTTCGGTCGCAAGAA
GACCGCTACCGCCGTCGCGTACTGCAAGCGCGGACGCGGCCTGATCAAGG
TGAACGGATGCCCCATCGAGCTCCTCGAGCCGGCCATCCTCAGGGTGAAG
ACCTTTGAGCCCGTTCTCCTCCTCGGCCCCGCGAGGTTTTCCAACGTGGA
CATCCGCGTCCGCGTCAGGGGCGGAGGTTACACTTCGCAGATCTACGCCA
TCCGCCAGGCAATCGCCAAGGCCATCGTGGCGTTCTACCAGAAGTACGTG
GACGAGGCCTCGAAGCGCGAGATCAAGGACCTCCTCATGGCCTACGACCG
AAACCTTCTCGTCGCCGACCCTCGCCGCTGCGAGCCCAAGAAGTTCGGCG
GTCCCTCGGCCCGCGCGCGCTACCAGAAGTCGTACCGTTGA
back to top