mRNA_Ecto-sp6_S_contig10.627.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.627.1
Unique NamemRNA_Ecto-sp6_S_contig10.627.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.627.1 vs. uniprot
Match: D7FPB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB0_ECTSI)

HSP 1 Score: 660 bits (1702), Expect = 1.060e-232
Identity = 371/376 (98.67%), Postives = 371/376 (98.67%), Query Frame = 1 
Query:  148 MLKALERMAGSPRCEKRLIDEGLFEALVGLCFNEVASFVHGCQNYLRQRREIEGVFSSAXXXXXXXXXXXXXXXXXXXXXXXARCESTVSTGGMSAGVGAGGRRKEAEGRFTEEKLEVAMDVARTCMAMFAHLTVRGHGRRALHAGVLAHINSVPIGAGDDPHMTGSLSQLVLDLSAVAMEGEENRLSFVGQGPLDAIMRCLRGGRAAQQQCALDALTTVCLLSEMKPLVFCREVLGEVLMLAAVQEHVQPAAFVLHQFSLLSEWRSPLVRGGCVDLLVAAIALATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHIGHRGRDRERDHKSESQETVEGSAST 1275
            MLKALERMAGSPRCEKRLIDEGLFEALVGLCFNEVASFVHGCQNYLRQRREIEGVFSSAXXXXXXXXXXXXXXXXXXXXXXXARCES VSTGGMSAG GAGGRRKEAEGRFTEEKLEVAMDVARTCMAMFAHLT RGHGRRALHAGVLAHINSVPIGAGDDPHMTGSLSQLVLDLSAVAMEGEENRLSFVGQGPLDAIMRCLRGGRAAQQQCALDALTTVCLLSEMKPLVFCREVLGEVLMLAAVQEHVQPAAFVLHQFSLLSEWRSPLVRGGCVDLLVAAIA ATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGL QLLRLSRSERENIRRDACQALKHIGHRGRDRERDHKSESQETVEGSAST
Sbjct:    1 MLKALERMAGSPRCEKRLIDEGLFEALVGLCFNEVASFVHGCQNYLRQRREIEGVFSSAXXXXXXXXXXXXXXXXXXXXXXXARCESIVSTGGMSAGAGAGGRRKEAEGRFTEEKLEVAMDVARTCMAMFAHLTARGHGRRALHAGVLAHINSVPIGAGDDPHMTGSLSQLVLDLSAVAMEGEENRLSFVGQGPLDAIMRCLRGGRAAQQQCALDALTTVCLLSEMKPLVFCREVLGEVLMLAAVQEHVQPAAFVLHQFSLLSEWRSPLVRGGCVDLLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLSQLLRLSRSERENIRRDACQALKHIGHRGRDRERDHKSESQETVEGSAST 376
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.627.1 vs. uniprot
Match: A0A6H5KGE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGE2_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 4.660e-54
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:  919 QFSLLSEWRSPLVRGGCVDLLVAAIALATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHIGHRGRDRERD 1230
            +FSLLSEWRSPLVRGGCVDLLVAAIA ATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKH+GHRGR RERD
Sbjct:    9 KFSLLSEWRSPLVRGGCVDLLVAAIAHATGPEAPPQEEACPILESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKHMGHRGRARERD 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPB0_ECTSI1.060e-23298.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGE2_9PHAE4.660e-5496.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2113603..2120389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2087
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-15_004080.1
Cds size1134
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.627.1prot_Ecto-sp6_S_contig10.627.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2114409..2120242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348714.145722-UTR-Ecto-sp6_S_contig10:2113602..21144081682348714.145722-UTR-Ecto-sp6_S_contig10:2113602..2114408Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2113603..2114408 -
1682348714.220635-UTR-Ecto-sp6_S_contig10:2120242..21203891682348714.220635-UTR-Ecto-sp6_S_contig10:2120242..2120389Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2120243..2120389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348714.1534023-CDS-Ecto-sp6_S_contig10:2114408..21144631682348714.1534023-CDS-Ecto-sp6_S_contig10:2114408..2114463Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2114409..2114463 -
1682348714.1604328-CDS-Ecto-sp6_S_contig10:2114862..21149911682348714.1604328-CDS-Ecto-sp6_S_contig10:2114862..2114991Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2114863..2114991 -
1682348714.170033-CDS-Ecto-sp6_S_contig10:2115596..21157721682348714.170033-CDS-Ecto-sp6_S_contig10:2115596..2115772Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2115597..2115772 -
1682348714.1772332-CDS-Ecto-sp6_S_contig10:2116185..21163021682348714.1772332-CDS-Ecto-sp6_S_contig10:2116185..2116302Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2116186..2116302 -
1682348714.1845002-CDS-Ecto-sp6_S_contig10:2116828..21169361682348714.1845002-CDS-Ecto-sp6_S_contig10:2116828..2116936Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2116829..2116936 -
1682348714.1918535-CDS-Ecto-sp6_S_contig10:2117874..21179651682348714.1918535-CDS-Ecto-sp6_S_contig10:2117874..2117965Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2117875..2117965 -
1682348714.1990178-CDS-Ecto-sp6_S_contig10:2118882..21190011682348714.1990178-CDS-Ecto-sp6_S_contig10:2118882..2119001Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2118883..2119001 -
1682348714.206075-CDS-Ecto-sp6_S_contig10:2119380..21196561682348714.206075-CDS-Ecto-sp6_S_contig10:2119380..2119656Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2119381..2119656 -
1682348714.2132287-CDS-Ecto-sp6_S_contig10:2120179..21202421682348714.2132287-CDS-Ecto-sp6_S_contig10:2120179..2120242Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2120180..2120242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.627.1

>prot_Ecto-sp6_S_contig10.627.1 ID=prot_Ecto-sp6_S_contig10.627.1|Name=mRNA_Ecto-sp6_S_contig10.627.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=378bp
MLKALERMAGSPRCEKRLIDEGLFEALVGLCFNEVASFVHGCQNYLRQRR
EIEGVFSSAATPPSAAAAGAATSSSRTKGGGGARCESTVSTGGMSAGVGA
GGRRKEAEGRFTEEKLEVAMDVARTCMAMFAHLTVRGHGRRALHAGVLAH
INSVPIGAGDDPHMTGSLSQLVLDLSAVAMEGEENRLSFVGQGPLDAIMR
CLRGGRAAQQQCALDALTTVCLLSEMKPLVFCREVLGEVLMLAAVQEHVQ
PAAFVLHQFSLLSEWRSPLVRGGCVDLLVAAIALATGPEAPPQEEACPIL
ESAVAAIRQITKLEGAGRVLVDAGGLPQLLRLSRSERENIRRDACQALKH
IGHRGRDRERDHKSESQETVEGSASTA*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:2113603..2120389-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.627.1 ID=mRNA_Ecto-sp6_S_contig10.627.1|Name=mRNA_Ecto-sp6_S_contig10.627.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6787bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2113603..2120389- (Ectocarpus species6 EcLAC_371)
GAGTGGCATCGGACGAAAGACGACACGTTTGTAGTCTGCAGGCAACAACA
CACGACATTGCCATCACCACAACAGCACCAGATCGCCAACAGCCATACCC
ATCGTTTGTGGGGGACCTCAACATTGATCGTTCTTGAAAGGTTGGCCATG
CTTAAGGCCCTGGAACGGATGGCGGGCAGTCCCAGATGTGAAAAGCGCCT
CATTGACGAGGTGTGTGCAACAACTTCCATTATCCAACACCCGCTATTCT
CCCAGTTTCTCCAACGTACTCTAGCTACAACTGCAGAGGTAACAACGAGG
GTTTTGGATCAAAATCCGAGGGCTCCCTCTCCGAGCTTGTGCTACGACCC
GTGACAGGTCGAGCTACTTTCCCCCCAGACAAAAAACAATCACTTACCTA
GCTTACCGTATACGACACAAGATAACACACCTCCTGGACCGACTTTCAAA
GCTCGATTTCTCGACTGCAGAGCGAGTCACAGCGCCGAAAACGGCGTCGT
TGAAGCCGCCTTGCCGAGAGCTTTCCGAAAATGTATCGTTTCGTTTATGC
ACATTCTTCGTCGTGGCGCAATCGAGCTTTGAAAAGTGGTCCAGGGGGTG
TGTTATCTTGTGTCGTATACGGTACTCGAACAACCAAAAAAATATGTGCG
TCCCTTGTCCATCCATCCCATCGTACTCGCAGCACCGCCCTTCATTGATT
CGCCAACTAAAAAACTCTCAACAACCGACGCAGGGCTTGTTCGAGGCGCT
TGTGGGTCTCTGCTTCAACGAAGTCGCTTCCTTCGTCCACGGATGCCAGA
ACTACCTCCGCCAGCGCCGAGAGATAGAAGGCGTTTTTTCCTCTGCGGCG
ACGCCTCCATCCGCCGCCGCCGCTGGCGCTGCCACGAGCAGCTCGCGCAC
GAAAGGCGGAGGCGGCGCGCGCTGCGAGTCCACCGTGTCCACCGGAGGCA
TGTCTGCGGGGGTCGGGGCAGGGGGGCGGAGGAAAGAAGCCGAAGGGCGG
TTCACCGAGGTGTGGGGCTCAGCAGTAGGAGCTTTCGTGCGCGTGTGGCC
TGAAGCCAAACGCGGGAGAGACGAAGCGATGAGTGAAATGCCCGTCGTGT
CTGTACCACGATATCTGTGGAGGGGGGGGTGAAACGCGGCAAAATCCGTG
TTCGGTCCACGTCTTGACCCAGCTGAGACAGTGTCACCCGACACGACCCA
CTCTGTTGGTCACGAGCACACCTCAAAGGCCTGGCGCACCCTACTAAGCA
ATTCAAACGTGTGCTCATCATGAGTCCCCCTCGCGACTATCACCTGTATC
CCCTCTTTCGTCTCCGTCACGCCCACACGGCTCGTTCCGCTTACCTTCCC
GCCTGCCTGCTCCTGACTACTTGCTCCGTTCCACCTAGGAAAAACTCGAG
GTGGCCATGGACGTGGCGAGAACGTGCATGGCGATGTTCGCGCACCTGAC
GGTGAGGGGTCACGGCAGACGAGCCCTGCACGCAGGGGTGCTGGCTCACA
TCAACAGGTACACCGCGGGGAACACCTCGAGTACGGCGCCGGCACAAAAG
CTACACACATATATATATTCCGGTAGTGGGCGGCGCGCCTCTATCGATTT
GGCGGTTCTTGGACACCGCGAGTACGTCGCCGCCACTAGAGCTATCGATA
CACCGGTAGTTGGTGGCGTGCCACCATCGATTTGGTGGTTCCCACAGTGG
GTTGAGGGCCGCCAGTTCCCCAGTTCCTTGGCTAGGAAGGGGGCTGTTGA
CTGTTGTCGCGGGATACATGTCGCGGCGAGTGTGTCACCACTGGCAGGCC
CTGCCCAGAGAGGTTGGGGCGTGTCTCGTCTGTAGGCACGTGGAACCTCC
GCCGCATGTCGGCCCTACGCTGCTGTATATTGCGCCCACTTGGCCGAGTC
CGATGCGCTAGTAGCAGAGCTGCGTGCACGTTTGGCCAACCTGTCTGGTT
GCCAAGCAGCGGTCGTATGTTGTTCACGATGTATTGGCCCCGAAACGTGA
AAAGAGTACCACGGATGTCGCCGCACCGTTTTCTCCGTCGCAGCTTCTTG
CGCCAACATGATCGCATGCCGCGGTGAGCGTTTCCCCCACATCTTCACAT
CGTGAACTCCACCCTGTACCTCGAACCCCACGACCTCCCGCATGCCTGCC
AGCGGTGTCTGTGGAGTAGGAATGGCACTATTCTTCCAGAATACGCAAGC
AACGAGCCGATGACTGCTGTAGGGCAAGCCGCAACAGATCGCGCGAACCC
CCGTGCGCACTGCTATCGTCCGACTGCTCTGGCAGTGCAGGCTAGAGCCG
CTCGCCAGCTTGGTTGCACTCAAAACTTCACCGCCGGTCTACATCCCGTC
CCCCCAGCCTACACTTAACGCCGTGGCAGTATGGAGTTTAACGGCCTCTT
TTCCCTCTCGCGTGCACGTTGCAGCGTGCCCATCGGGGCTGGAGACGATC
CTCACATGACCGGATCTCTAAGCCAGCTTGTGCTCGACCTGTCCGCAGTT
GCCATGGAAGGAGAGGTGATTAACCTTCCCCCCGGGAGAACCCACATACC
ATCGATTTGCAACGCTTGCCCAACCACATATACCGTCTCCCAACTCCAAC
AAACTTCCGCCTAGAAGCATTGATATTTCAAGATGTTTGGTCCACGATGT
CAGCATGGCTCAAGTTTTTTTCTGTTGATTGCTGTATCCTTGGCAATTTC
TACGTTGCGTTGAGTATTCTAGATCCTTTTTTTTCCTGCCAGTATTTGAT
TTTCGCGTTGTGCCCGTTTTGGGATAGTTAGCCTCTGACCACAGACGGCG
TCTGCGCCAGTCGGACCATTGCGGATGCTAGAAGATACTGAGCAGAGAGC
GGTAGTTTTTTTTTTATCATGAAGACAACAAATGACGACGGTCTCTGATT
TGCGGACTCTTGCTAATGTGAACCGGGGTTTGTTCTTAAGAGGTTCGCCT
CTAGACCCTTCTTAGATACGAAGCCAACTTCATTCTACAGAGGTTACCCT
AATGAGGACGTGATTTTGACACCGGTTCAGATGGAAAACCTTGACGGAAT
AACACTACGCATCGAGTGCAATCGCTATTGTTGTCGTTGTTGCTGTTGCT
GTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGGGAGGTGGTGGTGG
TGGTGGTTGATGTGGTTCTCCGCCCTCCCCACCGGACATTACTCTTTCAT
GGAAACAGTCGCTAACGGGGACGATAATAACACAACGCCCCGGTGACGAG
GTCTGTCTTTTCGAAATGACCAAAAAGCCAACCCTCGGTGCACGAGGCGC
TGAGAGACCCTAGACATGTATCTATCGCAAGGTTCCCCCCTGACAATTTT
TCCCGAGGACCTGGAGGTGTGATACTGGTGATTGCAGGAATCCTCTTACC
ACGTGAGCCGTTGAAACCGTCGATCTCTTCGCGTTGTGATCGCCTGTGAT
CAGGAGAACCGCCTTTCCTTCGTGGGACAGGGGCCCCTTGACGCCATCAT
GCGGTGCCTTAGGGGGGGACGGGCGGCGCAGCAGCAGTGCGCTCTCGACG
CCCTGACGACGGTACGTGCGCTCCGTTGCCGTGGGTGTACCTCTTTCTTG
TGCGCGATGGACGGGCTCACGACGGTACCGTAGCAAAGGGACACGTCCGA
AGGATAATTGCGTGTGAAGTTTGACCCAGCCTGCGTGCCCTATATGTATC
GACGAAAAAAAGTTGCTTGTTCTACCCGAGCTTTGGTATAGTGTTCTTGG
TAACCAGCGTTCTTCCTTGTTCTCATCAGCGCGCGTACGTGAGGCTATTG
TCCTGCGTCGACGTCTTGTGCGTTCAAAAAGGGCAATGCATCATTTTCCC
ACCGACCTGCATCTTTGTCCGTGGCCACCTATATCCGTTGAATTCAACGC
CTCATGCCCGTTCGCCCCCCTTCGCTACAAACAACTTGCCGCGAAGAGCG
ACCGAGCCACCACCACCACGGCGGTGCCGCCGGACTTGCACAGGGCGGTG
GCGGTAGCAGACACAAACACTGTTACATCATTTTTCCTTGCCGCGCCTTC
TACCTTATCCCACCGTCTCTGCCGCTGCTCTGCACAGGTTTGCCTTCTTT
CGGAGATGAAACCTCTGGTGTTCTGCCGGGAGGTCCTCGGCGAGGTGCTC
ATGCTTGCCGCCGTGCAGGAGCACGTGCAACCCGCCGCCTTCGTCTTGCA
CCAGGTAAACCGAAACACAGCTGGCCTTCGTTCAACCCATGACCTGAGCC
AGTGGCTGTACACGGGCTGTCGCTAACTCGAGATCGTGCCAAGAGACATC
ATCATGAGCCTAGACGCCGGAGCGCGCCCAGTTCGTATCCTTTTGTGTCT
CGCTGGCTGCCTGCGAGAAGAAGCCACCGATAGACAGAGATATATTGTTT
GCAATATCAACGTGGGTGAACACATCGCCGCCAGCAACGTCAATTGGCTC
CCTCCGGACGCCGGATTGCTCACGCCCGTGGAGACAAGGAATAACCGGCT
CAGGATCACAACTACTGCGTCCCAAGCTGGTATTGCAATTGCTGGGGTTC
TAGTGGTATGGCTGTCTAACCCTTATGGCTTCCTCTTGTCATGGATGCTC
GACCCCTTTCGTGCAAGTTTTCTCTTCTGTCGGAGTGGAGGTCACCGCTC
GTGCGGGGAGGGTGCGTAGATCTCCTGGTTGCTGCTATCGCCCTCGCCAC
AGGCCCGGAGGCTCCGCCGCAGGAAGAGGCGTGTCCGATCCTAGAGTCCG
CCGTCGCCGCAATCCGACAAATCACGAAGCTTGAAGGCGCCGGGTGAGCA
TAAGCAAGCCGTGGTGGGATGCAGCCTACCCACGAAAGAAGCCGCTTGGT
TTGTCCTTGTGATTGCGTGCAATATATTGGGTAGGACCTGTCGGTCGACA
TTGTGCCGGCCCATTTCTCTGACGTTCGTCGTCGGCGATATACGCATTGT
CTGATTCATGAATTGTCATCGAATGACACCCAATTCTGTTGTTACAGGTT
GAGCAAAACTCGCACGGCCGCTGGGACTCGGTACCTCTGTATCGTTTTCG
ACCTTTTCTTGTTGTCGTGCACAACGATAACAATCTGGAGCAACGGGCAA
AAGCGGAACTTGAGTTCTCATGCCGGTTATCTCCCATCTCCGGGGACCTT
GAAGATCAGTAATCAATCTTGTTTGCCCTCTTCGGCGGTGTTTTCATATC
CCCAGTCAAGGCGGTACCATCCGCTTTCTCTTCTCCTTCCACCTTCCTTC
CCTGACCCTCCCGGGTGCACCGACAGCCACCACCCTCTCTCTCAGCGCAA
AATAACACTTGCTCATGTTTGATGAATTCTAGCGCCTCCCACCCCTCCTC
CAGCCGCAGTTCCCCTCCTGATTCACCCGTTTGTGTGTCCTAACCCAGCC
GGGTATTGGTGGATGCGGGCGGTTTGCCCCAGCTGTTGCGGCTGAGCCGT
TCCGAGCGAGAAAACATCCGGAGGGACGCCTGTCAGGCCCTCAAGCACAT
CGGTCACAGAGGCAGAGACAGGGAGAGGTGCGTGAACGTTGATTGTTTCA
CCTTTTGAGACATTTTCGGTGTTCTCGCCGATGTTTTTTGTGGCCTAGAC
TAGGCCTCCTTCTCTTGTACGAACCTCTCTCTGAATCTACTTATTGCGCG
CATTTCTCTCATGTGCCACGGGGCCACGTAGCTCTCCTGAAGAAGCGCAC
CCAGCCATGACGACATGCACTATTTAGGAAGTTTTTTCTAGGACAATGCC
ACGGAAATTTCTTCGCCACACTCGACACACGACACAAACTTCACAAGACG
ATTTGGAACACAACGGATCGTATACGATCGAGCGCTCCAAACAGAGGGGA
TTCTCGCCTACCTCGTGTTCCTGCCGTGTGTGTGTTTTCCGCGCGTCGAA
CTGTCGGGTGTGTCTACCGGTCACAGGGACCACAAGTCCGAGAGCCAAGA
AACCGTGGAGGGTTCGGCATCTACAGCTTAGCCCCCGCTAGTTAGTCCTC
TGGTTTTGGCTGGCTGGAGATCTTCGTTTGAAGGGTTGAGCTACAAAAGA
CTTCAATACTTGAGTGTAGAGGTCCTTTATCGGGCTCACAAATGATGCTC
AAGTACTTATGTTGTTGTATACAATGGTGCTGCCAGGTTATTAGTTAAGT
GCAAGGCGCTACTGTATGTGCTGGTTGGTGAGGCTGCTGCCGAAAATGCG
GCCGACCGCTCGGGCGGAGGAGGGGGCAAACGTATACTGTAGCGTGGTGG
CAATTGCTGTGATGGCTCGCGCGAGAGGAAGAAGAGTAATTTGAGTAGCC
GATCAGGGGTCAGAACATTCGGTGAGCCAACGAACGACGTTGCCCGTTTC
TCTCATGACAAAAGGACGTAGTTAGGTGCTGATGTCTGTGTACATACACG
CGAGATATTGAGGAATATTAGCACGGGGGGGGTAGAGGTATCAATAACCC
CTGCGTCAACATGCATAAACAGCAAGAAAAGAGCCAAGACAAGTAGATCA
TGACCTGGACCCTTATTATCTCGTCGGCACACCGGCAGATGGTCAATGAA
TAGATCGCCGGCCATGGCTAGACAGCAACATGGAGCGTGTGCGGAATGCG
TAGCCCGGGACACAAGTACATTCAGAATGGGTTTGAAACTCACCGTGCCG
TTCCAAGTAGAGGGCTTATGCCCATAGACTTCCTTCCCTTCGGTCACGAG
GGATAGAGGAATCGCACAGCGCGAGCCAACATTGACTCGTGTTCTCGAAG
TGTTAAAGCAGGATTCTCAAAGCATGGTCTCCTGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2113603..2120389-

>mRNA_Ecto-sp6_S_contig10.627.1 ID=mRNA_Ecto-sp6_S_contig10.627.1|Name=mRNA_Ecto-sp6_S_contig10.627.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2113603..2120389- (Ectocarpus species6 EcLAC_371)
ATGCTTAAGGCCCTGGAACGGATGGCGGGCAGTCCCAGATGTGAAAAGCG
CCTCATTGACGAGGGCTTGTTCGAGGCGCTTGTGGGTCTCTGCTTCAACG
AAGTCGCTTCCTTCGTCCACGGATGCCAGAACTACCTCCGCCAGCGCCGA
GAGATAGAAGGCGTTTTTTCCTCTGCGGCGACGCCTCCATCCGCCGCCGC
CGCTGGCGCTGCCACGAGCAGCTCGCGCACGAAAGGCGGAGGCGGCGCGC
GCTGCGAGTCCACCGTGTCCACCGGAGGCATGTCTGCGGGGGTCGGGGCA
GGGGGGCGGAGGAAAGAAGCCGAAGGGCGGTTCACCGAGGAAAAACTCGA
GGTGGCCATGGACGTGGCGAGAACGTGCATGGCGATGTTCGCGCACCTGA
CGGTGAGGGGTCACGGCAGACGAGCCCTGCACGCAGGGGTGCTGGCTCAC
ATCAACAGCGTGCCCATCGGGGCTGGAGACGATCCTCACATGACCGGATC
TCTAAGCCAGCTTGTGCTCGACCTGTCCGCAGTTGCCATGGAAGGAGAGG
AGAACCGCCTTTCCTTCGTGGGACAGGGGCCCCTTGACGCCATCATGCGG
TGCCTTAGGGGGGGACGGGCGGCGCAGCAGCAGTGCGCTCTCGACGCCCT
GACGACGGTTTGCCTTCTTTCGGAGATGAAACCTCTGGTGTTCTGCCGGG
AGGTCCTCGGCGAGGTGCTCATGCTTGCCGCCGTGCAGGAGCACGTGCAA
CCCGCCGCCTTCGTCTTGCACCAGTTTTCTCTTCTGTCGGAGTGGAGGTC
ACCGCTCGTGCGGGGAGGGTGCGTAGATCTCCTGGTTGCTGCTATCGCCC
TCGCCACAGGCCCGGAGGCTCCGCCGCAGGAAGAGGCGTGTCCGATCCTA
GAGTCCGCCGTCGCCGCAATCCGACAAATCACGAAGCTTGAAGGCGCCGG
CCGGGTATTGGTGGATGCGGGCGGTTTGCCCCAGCTGTTGCGGCTGAGCC
GTTCCGAGCGAGAAAACATCCGGAGGGACGCCTGTCAGGCCCTCAAGCAC
ATCGGTCACAGAGGCAGAGACAGGGAGAGGGACCACAAGTCCGAGAGCCA
AGAAACCGTGGAGGGTTCGGCATCTACAGCTTAG
back to top