mRNA_Ecto-sp6_S_contig10.625.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: D7FPB2_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB2_ECTSI) HSP 1 Score: 476 bits (1226), Expect = 1.120e-160 Identity = 241/244 (98.77%), Postives = 241/244 (98.77%), Query Frame = 2
Query: 260 MSRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK--VDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAVTDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEMES 985
MSRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK VDPAGHYFPYKATSSG KEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAVTDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEMES
Sbjct: 1 MSRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKGVVDPAGHYFPYKATSSGSKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAVTDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEMES 244
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: A0A835YUN1_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN1_9STRA) HSP 1 Score: 391 bits (1005), Expect = 1.400e-127 Identity = 189/242 (78.10%), Postives = 212/242 (87.60%), Query Frame = 2
Query: 260 MSRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAVTDFRGNEVEVGVVSG-KGRFKTLDEDSIEAHLVAINEME 982
MSRDSNYDH IT+FSPQGRLYQIEYAFKAA GLTSV+VRGK+ V+VTQKKVPDRLIDP SVTN+F++TD++GCLMTGM AD+R VQRLRYEAHEFRFKYGYD P LARR ADI QVYTQQAS+RALACVA+L+AVDDEKGPQ+FKVDPAGH+FPYKA +SG KEQEA+NW EKKVD L EMDE ATIRCAIQCLQ+VTDFRGNE+EVGVVSG GRF TL E +E H+ AIN+M+
Sbjct: 1 MSRDSNYDHHITIFSPQGRLYQIEYAFKAASSSGLTSVAVRGKDACVVVTQKKVPDRLIDPASVTNLFRVTDRVGCLMTGMTADARASVQRLRYEAHEFRFKYGYDVPVGTLARRFADICQVYTQQASLRALACVALLVAVDDEKGPQVFKVDPAGHFFPYKAAASGAKEQEAVNWFEKKVDTLPEMDEAATIRCAIQCLQSVTDFRGNEIEVGVVSGASGRFHTLSEQQVEDHITAINDMD 242
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: A0A7S2XVL7_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVL7_9STRA) HSP 1 Score: 323 bits (829), Expect = 2.000e-101 Identity = 157/243 (64.61%), Postives = 195/243 (80.25%), Query Frame = 2
Query: 263 SRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEMES 985
+RDSNYD I++FSPQGRLYQIEYA KAA GLTS++VRG ET +VTQKKVPDRLIDP SVT+++++ +KIGCLMTGM AD+RV+VQRLRYEA E+RFK+GYD P HVLARR+AD++QVYTQ A +RA+A +L VDDEKGP LF++DPAGHY P+KATS+G KEQEAMNWLEKKV + +M++D TIR AI CLQ+V DF+ +E+EV V+ G G F L E IE+ L INE ++
Sbjct: 3 ARDSNYDRYISIFSPQGRLYQIEYAKKAANSSGLTSIAVRGAETCALVTQKKVPDRLIDPESVTSLYQVNNKIGCLMTGMTADARVVVQRLRYEAAEYRFKHGYDVPVHVLARRLADLSQVYTQHAGIRAMAATTILAGVDDEKGPMLFRIDPAGHYLPFKATSAGAKEQEAMNWLEKKVVEMPQMNQDQTIRTAIMCLQSVLSADFKSSEIEVAVLHGTGSFTKLSEQEIESQLNIINEEDA 245
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: A0A7S2WQZ1_9STRA (Proteasome subunit alpha type n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQZ1_9STRA) HSP 1 Score: 319 bits (817), Expect = 1.180e-99 Identity = 157/242 (64.88%), Postives = 193/242 (79.75%), Query Frame = 2
Query: 263 SRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEME 982
SRDSNYD IT+FSPQGRLYQ+EYA KAA GLT+V+VRG + MV QKKVPDRLIDP+SVT +++IT+KIGCLMTG+ AD RV V RLR EAHEF+F YGYD P HVLA+RIADI+QVYTQ+AS+R LAC +L +VDDEKGPQLFK+D AG +FPYKAT++G K EAMNWLEK+V+ DE T++ AI CLQ V +DF+G+++EVG+V RF+TL E+ IEAHL AI+E +
Sbjct: 3 SRDSNYDRHITIFSPQGRLYQVEYAIKAAENTGLTAVAVRGANSCAMVIQKKVPDRLIDPSSVTYVYQITEKIGCLMTGLTADCRVQVTRLRQEAHEFKFNYGYDMPVHVLAKRIADISQVYTQEASLRMLACNVILSSVDDEKGPQLFKIDSAGSFFPYKATAAGSKAAEAMNWLEKRVEPTPSTDEAKTVQTAIMCLQHVLSSDFKGSDLEVGLVVEGQRFRTLGEEEIEAHLTAISEQD 244
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: K8YP06_NANGC (Proteasome subunit alpha type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YP06_NANGC) HSP 1 Score: 317 bits (811), Expect = 8.150e-99 Identity = 163/243 (67.08%), Postives = 191/243 (78.60%), Query Frame = 2
Query: 266 RDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSGKGRF-KTLDEDSIEAHLVAINEMES 985
RDS YDH IT+FSPQGRLYQIEYAFKAA GLTSV+VRGKE +VTQKKVPDRLIDP+SV+NI++ITDK+G +MTGM DSR V RLR EAHEFRFKYGYD P HVLA+RIADIAQ QASMRALA V ML+ VDDE+GPQL+KVDPAGH+FP+KAT++G K+ EA NWLEKKV L + + T+ AI LQ+V TDF+G+E+EVGVV G G F TL E I+ HL AI E ++
Sbjct: 4 RDSQYDHHITIFSPQGRLYQIEYAFKAANSEGLTSVAVRGKECVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQ----QASMRALATVCMLVGVDDERGPQLYKVDPAGHFFPFKATAAGVKQDEATNWLEKKVGDLGGLGTEETVELAIMALQSVLSTDFKGSEIEVGVVEGVGGFFHTLTEGEIDHHLTAITEKDA 242
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: A0A7S2C157_9STRA (Proteasome subunit alpha type n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C157_9STRA) HSP 1 Score: 314 bits (804), Expect = 1.150e-97 Identity = 153/243 (62.96%), Postives = 191/243 (78.60%), Query Frame = 2
Query: 260 MSRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEME 982
MSRD+NYD IT+FSPQGRLYQ+EYA KAA GLT+V+VRG ++ +V QKKVPDRLIDPTSVT +++IT KIGCLMTG+ AD RV V R+R EAH+++F YGYD P HVLA+RIADI QVYTQ+AS+R LAC ++ +VDDE GPQ+FK+D AG YFP+KAT+SG K EA NWLEKK G D T++ AI CLQ + +DF+G+++EVGV+ G GRFKTL ED IEAHL AI++ +
Sbjct: 9 MSRDANYDRHITIFSPQGRLYQVEYALKAADSTGLTAVAVRGADSCALVIQKKVPDRLIDPTSVTYVYEITPKIGCLMTGLTADCRVQVTRMRQEAHQYKFDYGYDMPVHVLAKRIADICQVYTQEASLRMLACNVIIASVDDELGPQIFKIDAAGSYFPFKATASGSKHMEATNWLEKKEIGTG--DTTKTVQMAIMCLQHILSSDFKGSDLEVGVIEGTGRFKTLGEDEIEAHLTAISDQD 249
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: H3G9M2_PHYRM (Proteasome subunit alpha type n=26 Tax=Oomycota TaxID=4762 RepID=H3G9M2_PHYRM) HSP 1 Score: 307 bits (786), Expect = 3.890e-95 Identity = 152/237 (64.14%), Postives = 187/237 (78.90%), Query Frame = 2
Query: 278 YDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEME 982
YD IT+FSP+GRLYQIEYAF+AA LTSV+VRGK+++V VTQKKV D+LI+P SVTN+F+IT +IGCLMTG+ ADS+ VQRLR+EAHEF K+GY P HVLA+RIAD+AQVYTQ ASMRA + ML++VD+EKGPQLFK+DPAGH++ YKATS+G KEQEA N+LEKK+ MD + T+ AI CLQ+V DFR NE+EVGVV RF+ L ED IE HL AI+E +
Sbjct: 6 YDRHITIFSPEGRLYQIEYAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRFEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLVSVDEEKGPQLFKIDPAGHFWGYKATSAGVKEQEAQNYLEKKIKANPAMDYETTLHTAITCLQSVLSADFRPNEIEVGVVLQGQRFRKLSEDEIETHLTAISERD 242
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: F0W2W5_9STRA (Proteasome subunit alpha type n=2 Tax=Albugo TaxID=65356 RepID=F0W2W5_9STRA) HSP 1 Score: 307 bits (786), Expect = 3.890e-95 Identity = 151/237 (63.71%), Postives = 185/237 (78.06%), Query Frame = 2
Query: 278 YDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEME 982
YD IT+FSP+GRLYQIEYAFKA G GLTSV+VRG ++ V +TQKKV D+LIDP SVT+IF+IT +IGCLMTGM AD++ VQRLRYEA+EF FK+GY P +VLA+R ADIAQVYTQ ASMRA V MLI +DDEKGPQL+K+DPAGH++ YKATS+G+ EQ+A+N+LEKKV MD AT+ AI CLQ+ DFR NE+EVGV RFK L E+ I+AHL A++E +
Sbjct: 6 YDRHITIFSPEGRLYQIEYAFKAVQGSGLTSVAVRGMDSCVFITQKKVQDKLIDPESVTHIFQITAEIGCLMTGMYADAKAQVQRLRYEANEFAFKFGYSVPCYVLAKRAADIAQVYTQHASMRAFGVVTMLIGIDDEKGPQLYKIDPAGHFWGYKATSAGKNEQQALNYLEKKVKANPSMDYTATLHAAITCLQSTLSADFRSNEIEVGVARTGERFKKLSEEEIDAHLTAVSERD 242
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: A0A7R9WI81_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9WI81_9STRA) HSP 1 Score: 306 bits (785), Expect = 6.480e-95 Identity = 156/241 (64.73%), Postives = 192/241 (79.67%), Query Frame = 2
Query: 260 MSRDSNYDHQITVFSPQGRLYQIEYAFKAAMGP-GLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSGK-GRFKTLDEDSIEAHLVAI 970
MSRDSNYDH I++FSPQGRLYQ+EYAFKAA GLT V+VRGK+++ +VTQKKVPDRL+DP SV++I+ IT +IGCL TGM+AD + VQR RYEA +F+FKYGY P LA+RIAD+AQVYTQ ASMR LA V +LI VDDEKGPQ+FKVD AGHY P+KA +SG+KEQEA N+LEK+V + E D T+R AI CL V +DFRG+E+EV +V GK G+F++LDE+ IE HL AI
Sbjct: 1 MSRDSNYDHHISIFSPQGRLYQMEYAFKAASSASGLTGVAVRGKDSAAVVTQKKVPDRLMDPKSVSHIWNITPQIGCLCTGMLADCKAQVQRARYEAADFQFKYGYPIPVAALAKRIADVAQVYTQSASMRPLASVCLLIGVDDEKGPQVFKVDCAGHYLPFKAAASGQKEQEAANFLEKRVKDMPEYTSDQTVRQAIMCLGHVLGSDFRGSEIEVAMVEGKQGKFRSLDEEEIEGHLNAI 241
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Match: A0A2D4BD13_PYTIN (Proteasome subunit alpha type n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD13_PYTIN) HSP 1 Score: 304 bits (778), Expect = 5.830e-94 Identity = 153/237 (64.56%), Postives = 181/237 (76.37%), Query Frame = 2
Query: 278 YDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVDPAGHYFPYKATSSGRKEQEAMNWLEKKVDGLMEMDEDATIRCAIQCLQAV--TDFRGNEVEVGVVSGKGRFKTLDEDSIEAHLVAINEME 982
YD IT+FSP+GRLYQIEYAF AA GLTSV VRGK+ +V VTQKKV D+LIDP SVT++F IT IG L+TG+ AD+R VQRLRYEAH+F KYGY P HVLA+RIAD+AQVYTQ ASMRA + LI+VDDEKGPQLFKVDPAGH++ YKATSSG KEQEA N+LEKK+ MD + T+ AI CLQ+V DFR NE+EVGV+ G F+ L E+ IE HL AI+E +
Sbjct: 6 YDRHITIFSPEGRLYQIEYAFNAAKECGLTSVGVRGKDCAVFVTQKKVQDKLIDPDSVTSVFPITPSIGALVTGLPADARAQVQRLRYEAHDFEHKYGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITFLISVDDEKGPQLFKVDPAGHFWGYKATSSGPKEQEAQNYLEKKIKANASMDTETTLHTAITCLQSVLSADFRPNEIEVGVIVEGGLFRQLTEEEIEGHLTAISERD 242 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.625.1 >prot_Ecto-sp6_S_contig10.625.1 ID=prot_Ecto-sp6_S_contig10.625.1|Name=mRNA_Ecto-sp6_S_contig10.625.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp MSRDSNYDHQITVFSPQGRLYQIEYAFKAAMGPGLTSVSVRGKETSVMVTback to top mRNA from alignment at Ecto-sp6_S_contig10:2101545..2108798- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.625.1 ID=mRNA_Ecto-sp6_S_contig10.625.1|Name=mRNA_Ecto-sp6_S_contig10.625.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7254bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2101545..2108798- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2101545..2108798- >mRNA_Ecto-sp6_S_contig10.625.1 ID=mRNA_Ecto-sp6_S_contig10.625.1|Name=mRNA_Ecto-sp6_S_contig10.625.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2101545..2108798- (Ectocarpus species6 EcLAC_371)back to top |