mRNA_Ecto-sp6_S_contig10.610.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.610.1
Unique NamemRNA_Ecto-sp6_S_contig10.610.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: A0A6H5KGH9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH9_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.410e-23
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 1
Query:  112 EGEEISGGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKVG 297
            E EE  GGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKS A    AARMNPAL+IRPLEKKVG
Sbjct:  354 EREESRGGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSVAAAAAAARMNPALKIRPLEKKVG 415          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: A0A835Z5W8_9STRA (UBA_e1_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.760e-16
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  133 GIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKVG 297
            G+IVTDMDTIEKSNLNRQFLFR+RDVG+AKS A    A  MNPALR+ PL K+VG
Sbjct:  581 GVIVTDMDTIEKSNLNRQFLFRARDVGRAKSEAAAAAARAMNPALRVAPLLKRVG 635          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: A0A7V5I5S4_9BACT (UBA_e1_C domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I5S4_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 4.150e-13
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  130 GGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKVG 297
            G I +TDMDTIE+SNLNRQFLFR+ D+G++KS A    A R+NP L +R LE +VG
Sbjct:  543 GSIAITDMDTIERSNLNRQFLFRATDIGRSKSLAARDAALRLNPELNVRALEMRVG 598          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: A0A7S3XY88_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY88_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 9.480e-13
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  112 EGEEISGGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKV 294
            EGE   G + VTDMD IE+SNLNRQFLFR  DVG AKSAA    A R+NP  ++  LEKKV
Sbjct:    1 EGEG-GGRLTVTDMDAIERSNLNRQFLFREADVGSAKSAAAARAARRLNPDFQVVALEKKV 60          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: A0A2E3C0Q2_9PROT (UBA_e1_C domain-containing protein n=1 Tax=Magnetococcales bacterium TaxID=2026759 RepID=A0A2E3C0Q2_9PROT)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  130 GGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKVG 297
            G ++VTDMDTIEKSNLNRQFLFRS D+GK KS A      RMNP +++   E +VG
Sbjct:  418 GNMVVTDMDTIEKSNLNRQFLFRSTDIGKLKSVAACDAIKRMNPDIKVESHENRVG 473          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: A0A1V0SCZ9_9VIRU (E1 ubiquitin-activating enzyme n=1 Tax=Indivirus ILV1 TaxID=1977633 RepID=A0A1V0SCZ9_9VIRU)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  130 GGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKVG 297
            G II+TDMDTIEKSNLNRQFLFR +D+GK KS        +MNP + I PL+ +VG
Sbjct:  418 GKIIITDMDTIEKSNLNRQFLFRDKDIGKPKSTTAANAIKKMNPDILITPLQDRVG 473          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: R7QQ62_CHOCR (Ubiquitin-activating enzyme E1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ62_CHOCR)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-12
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  127 SGGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKVG 297
            +GG+IVTDMDTIEKSNL+RQFLFR  D+GK KS A      RMNPA+++   E +VG
Sbjct:  427 NGGVIVTDMDTIEKSNLSRQFLFRDTDIGKPKSIAAAGAILRMNPAMKVVAHEIRVG 483          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: A0A6G3ME91_HENSL (Ubiquitin-like modifier-activating enzyme 1 (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3ME91_HENSL)

HSP 1 Score: 72.0 bits (175), Expect = 1.860e-12
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  115 GEEISGGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKVG 297
            G++  G I+VTDMDTIEKSNLNRQFLFRS+D+G  KS A      ++NP + + PL  +VG
Sbjct:  451 GQQSKGSIVVTDMDTIEKSNLNRQFLFRSQDIGSFKSEAACRVIKKINPDIHLIPLLHRVG 511          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: A0A2V3IUT3_9FLOR (Ubiquitin-like modifier-activating enzyme 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUT3_9FLOR)

HSP 1 Score: 71.2 bits (173), Expect = 3.600e-12
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  115 GEEISGGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKVG 297
            G    G IIVTDMDTIEKSNL+RQFLFR  D+GK+KS+A       MNP ++I P E +VG
Sbjct:  228 GSGPKGEIIVTDMDTIEKSNLSRQFLFRDTDIGKSKSSAAAAAIKVMNPTVKITPHETRVG 288          
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Match: UPI00081196D5 (ubiquitin-like modifier-activating enzyme 1 n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI00081196D5)

HSP 1 Score: 70.9 bits (172), Expect = 4.970e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  127 SGGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKSAAXXXXAARMNPALRIRPLEKKV 294
            +G + VTDMDTIEKSNLNRQFLFR +DVG  KSAA      +MNP ++I P E +V
Sbjct:  462 NGQLFVTDMDTIEKSNLNRQFLFRPKDVGSLKSAAAAAATIKMNPQIKITPHENRV 517          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGH9_9PHAE2.410e-2385.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z5W8_9STRA1.760e-1674.55UBA_e1_C domain-containing protein n=1 Tax=Tribone... [more]
A0A7V5I5S4_9BACT4.150e-1360.71UBA_e1_C domain-containing protein n=2 Tax=cellula... [more]
A0A7S3XY88_HETAK9.480e-1362.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2E3C0Q2_9PROT1.430e-1260.71UBA_e1_C domain-containing protein n=1 Tax=Magneto... [more]
A0A1V0SCZ9_9VIRU1.430e-1260.71E1 ubiquitin-activating enzyme n=1 Tax=Indivirus I... [more]
R7QQ62_CHOCR1.430e-1261.40Ubiquitin-activating enzyme E1 n=1 Tax=Chondrus cr... [more]
A0A6G3ME91_HENSL1.860e-1255.74Ubiquitin-like modifier-activating enzyme 1 (Trino... [more]
A0A2V3IUT3_9FLOR3.600e-1259.02Ubiquitin-like modifier-activating enzyme 1 n=1 Ta... [more]
UPI00081196D54.970e-1260.71ubiquitin-like modifier-activating enzyme 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1973463..1973786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score73.6
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog45157.CMI034CT
Preferred nameUBA1
Model size324
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ubiquitin activating enzyme activity
EggNOG OGsCOG0476@1,KOG2012@2759
EC6.2.1.45
Cds size324
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.8453968-CDS-Ecto-sp6_S_contig10:1973462..19737861682348693.8453968-CDS-Ecto-sp6_S_contig10:1973462..1973786Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1973463..1973786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.610.1prot_Ecto-sp6_S_contig10.610.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1973463..1973786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.610.1

>prot_Ecto-sp6_S_contig10.610.1 ID=prot_Ecto-sp6_S_contig10.610.1|Name=mRNA_Ecto-sp6_S_contig10.610.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=108bp
TAAAAAAASDASSSAAAVVEDVAAAAEGDGGDGGNEDEGEEISGGIIVTD
MDTIEKSNLNRQFLFRSRDVGKAKSAAAAAAAARMNPALRIRPLEKKVGM
RKYSSNT*
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mRNA from alignment at Ecto-sp6_S_contig10:1973463..1973786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.610.1 ID=mRNA_Ecto-sp6_S_contig10.610.1|Name=mRNA_Ecto-sp6_S_contig10.610.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1973463..1973786+ (Ectocarpus species6 EcLAC_371)
ACCGCCGCCGCCGCTGCTGCTGCTTCCGACGCCTCTTCCAGCGCTGCTGC TGTGGTTGAAGATGTGGCAGCGGCGGCGGAAGGAGATGGCGGCGACGGGG GGAACGAGGACGAAGGCGAGGAGATTAGCGGCGGAATCATCGTGACCGAT ATGGACACCATCGAGAAGAGCAACCTGAACCGGCAGTTCTTGTTCCGGAG TCGGGACGTCGGGAAGGCCAAGAGCGCAGCGGCAGCGGCGGCGGCGGCGC GGATGAACCCGGCCCTAAGGATCAGGCCGCTGGAGAAGAAGGTGGGGATG AGAAAATACTCGTCGAACACATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1973463..1973786+

>mRNA_Ecto-sp6_S_contig10.610.1 ID=mRNA_Ecto-sp6_S_contig10.610.1|Name=mRNA_Ecto-sp6_S_contig10.610.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1973463..1973786+ (Ectocarpus species6 EcLAC_371)
ACCGCCGCCGCCGCTGCTGCTGCTTCCGACGCCTCTTCCAGCGCTGCTGC
TGTGGTTGAAGATGTGGCAGCGGCGGCGGAAGGAGATGGCGGCGACGGGG
GGAACGAGGACGAAGGCGAGGAGATTAGCGGCGGAATCATCGTGACCGAT
ATGGACACCATCGAGAAGAGCAACCTGAACCGGCAGTTCTTGTTCCGGAG
TCGGGACGTCGGGAAGGCCAAGAGCGCAGCGGCAGCGGCGGCGGCGGCGC
GGATGAACCCGGCCCTAAGGATCAGGCCGCTGGAGAAGAAGGTGGGGATG
AGAAAATACTCGTCGAACACATGA
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