mRNA_Ecto-sp6_S_contig10.606.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.606.1
Unique NamemRNA_Ecto-sp6_S_contig10.606.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: A0A6H5KSE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE8_9PHAE)

HSP 1 Score: 556 bits (1432), Expect = 2.430e-193
Identity = 287/308 (93.18%), Postives = 296/308 (96.10%), Query Frame = 2 
Query:   32 MLFRRLLFPAAATLARAAEVRSFTLTSGAGGGVRHLSVSPRRQQLGAFLDGSEPLSRSSTGRTVSKVSRGMATGEGAGLGEILNLKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQSASKPSSPS 955
            MLFRRLLFPAAATLARA EVRSFT TSGA G V+HLSVSPRRQQLGAFL GSEPLSRSSTGRTVSKVSRGMATGE AG GEILNLKTAQDVVDFWFGTDL RLASD+EYGQSFGAKWFG GPPDQAFIGTQ+ASKEL+AKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFA+DETAASLSLEIISKGWDTVDA+NYTFQQRLFVYLPLMHSERIEAQDA VSKVKALVDDEMKATGSA+SLVHDMALEHRGVVAKFGRFPHRNAAL RESTPEEL+WLSSDDIPGWAKSQ AS+PSSPS
Sbjct:    1 MLFRRLLFPAAATLARAVEVRSFTSTSGAAGAVQHLSVSPRRQQLGAFLHGSEPLSRSSTGRTVSKVSRGMATGEKAGSGEILNLKTAQDVVDFWFGTDLVRLASDREYGQSFGAKWFGVGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFAHDETAASLSLEIISKGWDTVDARNYTFQQRLFVYLPLMHSERIEAQDACVSKVKALVDDEMKATGSADSLVHDMALEHRGVVAKFGRFPHRNAALRRESTPEELQWLSSDDIPGWAKSQGASEPSSPS 308
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: D7FVL0_ECTSI (Putative transmembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL0_ECTSI)

HSP 1 Score: 466 bits (1200), Expect = 2.510e-159
Identity = 235/238 (98.74%), Postives = 237/238 (99.58%), Query Frame = 2 
Query:  242 MATGEGAGLGEILNLKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQSASKPSSPS 955
            MATGEGAGLGEILNLKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQ+ASKELVAKAGSGELKGEEWET KGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQSAS+PSSPS
Sbjct:    1 MATGEGAGLGEILNLKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQNASKELVAKAGSGELKGEEWETSKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQSASEPSSPS 238
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: A0A835Z6H1_9STRA (Putative transmembrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H1_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.990e-46
Identity = 104/216 (48.15%), Postives = 130/216 (60.19%), Query Frame = 2 
Query:  284 LKTAQDVVDFWFGTDLARL-ASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ 928
            L   QDV+ FWFG D A L A     G  F   WFG G  D+ F   Q  +K+L+ +A +G   G EW+ P+  LAR+++LDQF RT YR T+QAF  DE AA +S   I  G D    + +T  +RLF YLPLMHSER+E Q   ++KV +    E      ANS        H  VV +FGRFPHRNAA+GR STPEEL WL+SD +PGWA+SQ
Sbjct:   10 LHLLQDVLTFWFGDDAAALTAGSPARGYRF-KLWFG-GANDERFDALQVEAKDLIQQAAAG---GPEWDGPRNTLARIIVLDQFSRTAYRATAQAFERDEMAADISAAAIDAGSD----EQFTPYERLFFYLPLMHSERMEYQRLCLAKVTSTPGLE-DCIAFANS--------HLVVVEQFGRFPHRNAAMGRTSTPEELAWLASDKLPGWARSQ 207
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: A0A7J7INC6_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7INC6_9RHOD)

HSP 1 Score: 169 bits (427), Expect = 4.890e-44
Identity = 95/223 (42.60%), Postives = 139/223 (62.33%), Query Frame = 2 
Query:  284 LKTAQDVVDFWFGTDLA------RLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATG--SANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ 928
            L + +DV  FWF  + +      +L+S + +G+    +WF +   D+ F   Q  + ELV +AG GEL G+ W+ P G LAR++L DQFPR ++RG ++AF+ D+ A  +S  II +GWD      + + +R F+YLPLMHSE +  Q   V  V+A  DD    T    ++S    MA +H  V+ +FGRFP+RN ALGRESTPEE+EW++S+D+P +AKSQ
Sbjct:    4 LTSPEDVFRFWFELEPSQEKRREKLSSLRYFGER-APQWFFS--KDKEFERVQIDNVELVHRAGRGELHGDSWDQPLGLLARIILTDQFPRCIWRGRAEAFSYDKVARGISRLIIERGWDK---SQFFYVERTFIYLPLMHSEDLADQLDSVRLVRAAADDTSWWTRWRHSHSTSLKMAEDHLRVIQRFGRFPYRNQALGRESTPEEIEWMNSEDLPVYAKSQ 220
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: M1V5Y2_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1V5Y2_CYAM1)

HSP 1 Score: 156 bits (394), Expect = 3.120e-39
Identity = 94/231 (40.69%), Postives = 132/231 (57.14%), Query Frame = 2 
Query:  284 LKTAQDVVDFWFGTDLA-----RLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGS--------ANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQSAS 937
            L +A+DV  FWFG + +     +  S   Y +S  A WF     ++ F   Q  S +LV +AG GEL G EW+ P G LAR+LL DQFPR ++RG ++AF  D  A  +   I+ KGWD  +   + F +R+F+YLPL HSE +  Q   V  ++        A GS        A S+   MA +H  V+ +FGRFP+RN +LGR S+P+E+ WL S ++P +AKSQ AS
Sbjct:   17 LNSAEDVFTFWFGVEPSLEKRRKCLSSFSYFESRVATWFLG--KNKEFELVQLESVDLVHRAGRGELHGGEWDQPLGLLARILLTDQFPRCIWRGRAEAFQYDNVARGICRAILEKGWDKSE---FFFAERIFIYLPLEHSESLADQRECVRLMRTA------AAGSPWLTRWKHARSVNVKMAEDHLRVIERFGRFPYRNESLGRASSPDEIAWLRSGNLPVFAKSQLAS 236
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: A0A7R9UCH7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCH7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.750e-37
Identity = 84/213 (39.44%), Postives = 120/213 (56.34%), Query Frame = 2 
Query:  299 DVVDFWFGTDL---ARLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ 928
            DV+ FWFG +        S   Y +S   +W+  GP   A      +  +LV  AG+G+L GEEWE P G +AR+LL DQ  R  +RGT++AFA DE A  LS++ I  G D       TF +R F+Y+ LMHSE  E  +  +++  + ++   +        +      H  V+ +FGR+PHRN ALGRE+TPEE E+L+ DD+P W +SQ
Sbjct:   40 DVLRFWFGDEYFEDREALSRPGYMESQNDRWWMGGPEMDAQC---ESFADLVRAAGAGKLVGEEWEEPNGKVARVLLCDQIARGAFRGTTEAFAYDEVACGLSMQAIENGEDMPGI--LTFAERWFLYVALMHSENAETHELCLARFHSYLEHYPELEADVRFGI-GFEEAHYDVIKRFGRYPHRNKALGRENTPEETEFLAQDDLPAWMRSQ 246
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: A0A816V5U6_9BILA (Hypothetical protein n=2 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816V5U6_9BILA)

HSP 1 Score: 145 bits (365), Expect = 5.610e-36
Identity = 88/231 (38.10%), Postives = 127/231 (54.98%), Query Frame = 2 
Query:  272 EILNLKTAQDVVDFWFGTDLAR-----LASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVD------DEMKAT-GSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ 928
            E+  L ++  V+ +WFG D  +       ++ +Y +S    WFG   P   F   QS S EL+A         E+W +  G +A++L+ DQF R++YRGT++AF  D+      + ++SK W      +YT  +RLF+ + L HSE +EAQ  GV     +VD      D++K    +     H    EH  V+ +FGRFP RN A+GREST EE+EWL+S D PGWAKSQ
Sbjct:    6 EMTLLNSSDQVLSYWFGGDYFKEEAHNTLNNVDYIKSRMPLWFGRADP--TFDLVQSNSVELLALLERIHNTSEDWSSKTGIMAKILVFDQFARSIYRGTAKAFQYDDHTRECVMFLLSKNWFL----DYTAIERLFIIIALQHSELMEAQTMGVKLASTIVDNITENHDDLKYYFDNLKGFPH----EHHDVIQQFGRFPGRNDAMGRESTVEEVEWLTSPDCPGWAKSQ 226
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: UPI0019DD02EA (DUF924 domain-containing protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019DD02EA)

HSP 1 Score: 138 bits (348), Expect = 4.920e-34
Identity = 85/200 (42.50%), Postives = 116/200 (58.00%), Query Frame = 2 
Query:  296 QDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWET-PKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWL 892
            Q V++FWFG      + +  Y Q     WF         I  +     L A+A +GEL  + WET P+  LA LL+LDQFPR ++R T +AFA DE A +++   + +G+D    +  T  QRLF+YLPL HSE +E Q   V+ VK L D++     +A    +D AL HR V+ +FGRFPHRNA LGREST EE ++L
Sbjct:    7 QAVLNFWFGDP---ASPESSYAQRR-KLWFTKSEETDETI--RQEFMPLYAQAATGEL--DSWETEPRSCLALLLILDQFPRNLFRDTPRAFATDEKALAIAKRAVDRGFD----KELTLVQRLFMYLPLEHSENLEDQHRSVALVKTLKDED-----AALEDAYDYALRHRDVIQRFGRFPHRNAILGRESTAEEQDFL 189
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: A0A0K1ZJ47_RALSL (Membrane protein n=18 Tax=Burkholderiaceae TaxID=119060 RepID=A0A0K1ZJ47_RALSL)

HSP 1 Score: 136 bits (343), Expect = 2.140e-33
Identity = 88/208 (42.31%), Postives = 119/208 (57.21%), Query Frame = 2 
Query:  275 ILNLKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEW-ETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLS 895
            ++ L TA DV+ FWFGT  A +A+         A WF       A I  +         AGS +     W +TP  A+AR+++LDQFPR ++RGT +AFA+D TA   +  +++ GWD   A+  T   R+F YLP  HSE + AQD  +     L D E    G A+SL+   A  HR ++A+FGRFPHRNAALGR STPEE+ +LS
Sbjct:    1 MIGLPTADDVLAFWFGT--APIAAPC-------ATWFDRSDAFDADIRARFLPLWEALCAGSADT----WMDTPLEAIARIVVLDQFPRNMFRGTPRAFASDATALHTARIVVAAGWD---AELPTRFHRMFCYLPFEHSEALAAQDESIRLFTRLRDQE----GDADSLM--WAHRHRDIIARFGRFPHRNAALGRASTPEEIGFLS 186
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BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Match: A0A7S3M5A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5A7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.300e-32
Identity = 85/210 (40.48%), Postives = 118/210 (56.19%), Query Frame = 2 
Query:  275 ILNLKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVD--DEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSS 898
            I++L T QD++DFWFG+D + L         FG  +F   P  +     ++A  + ++ A S    GEEW T +G LAR+++LDQ  RT +RGT +AFA D+ A  L L+II KGW       Y   +R  + LPL+HSE I A       V  L +  +  +      S V  +A EH  VV KFGR+P RN+ALGR +TPEE E+L+S
Sbjct:    9 IMSLATPQDILDFWFGSDRSLLNEVSHIKHLFGVWFFRTNPAVETTFIAEAAQIDKLSDASS---LGEEWFTAEGILARVVMLDQGTRTAFRGTPKAFAYDDIAKELVLDIIQKGWFF---DKYLPVERQILCLPLLHSEDIHAHRVASELVHRLSEGTENPELVQMFKSNVSFLA-EHTQVVEKFGRYPSRNSALGRTNTPEEEEYLAS 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSE8_9PHAE2.430e-19393.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVL0_ECTSI2.510e-15998.74Putative transmembrane protein n=1 Tax=Ectocarpus ... [more]
A0A835Z6H1_9STRA1.990e-4648.15Putative transmembrane protein n=1 Tax=Tribonema m... [more]
A0A7J7INC6_9RHOD4.890e-4442.60Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1V5Y2_CYAM13.120e-3940.69Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7R9UCH7_9STRA2.750e-3739.44Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A816V5U6_9BILA5.610e-3638.10Hypothetical protein n=2 Tax=Rotaria magnacalcarat... [more]
UPI0019DD02EA4.920e-3442.50DUF924 domain-containing protein n=1 Tax=filamento... [more]
A0A0K1ZJ47_RALSL2.140e-3342.31Membrane protein n=18 Tax=Burkholderiaceae TaxID=1... [more]
A0A7S3M5A7_9STRA1.300e-3240.48Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1945401..1951459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score466.8
Seed ortholog evalue7.6e-129
Seed eggNOG ortholog2880.D7FVL0
Model size1991
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.Bacterial protein of unknown function (DUF924)
EggNOG OGs2S80R@2759,COG3803@1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-15_003690.1
Cds size927
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.606.1prot_Ecto-sp6_S_contig10.606.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1945432..1950426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348712.5956857-UTR-Ecto-sp6_S_contig10:1945400..19454311682348712.5956857-UTR-Ecto-sp6_S_contig10:1945400..1945431Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1945401..1945431 +
1682348712.6988509-UTR-Ecto-sp6_S_contig10:1950426..19514591682348712.6988509-UTR-Ecto-sp6_S_contig10:1950426..1951459Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1950427..1951459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348712.606969-CDS-Ecto-sp6_S_contig10:1945431..19456101682348712.606969-CDS-Ecto-sp6_S_contig10:1945431..1945610Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1945432..1945610 +
1682348712.6166677-CDS-Ecto-sp6_S_contig10:1946853..19469441682348712.6166677-CDS-Ecto-sp6_S_contig10:1946853..1946944Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1946854..1946944 +
1682348712.6257932-CDS-Ecto-sp6_S_contig10:1947732..19478901682348712.6257932-CDS-Ecto-sp6_S_contig10:1947732..1947890Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1947733..1947890 +
1682348712.6419864-CDS-Ecto-sp6_S_contig10:1948353..19484431682348712.6419864-CDS-Ecto-sp6_S_contig10:1948353..1948443Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1948354..1948443 +
1682348712.6606252-CDS-Ecto-sp6_S_contig10:1948611..19487711682348712.6606252-CDS-Ecto-sp6_S_contig10:1948611..1948771Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1948612..1948771 +
1682348712.677857-CDS-Ecto-sp6_S_contig10:1949462..19495841682348712.677857-CDS-Ecto-sp6_S_contig10:1949462..1949584Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1949463..1949584 +
1682348712.6894724-CDS-Ecto-sp6_S_contig10:1950299..19504261682348712.6894724-CDS-Ecto-sp6_S_contig10:1950299..1950426Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1950300..1950426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.606.1

>prot_Ecto-sp6_S_contig10.606.1 ID=prot_Ecto-sp6_S_contig10.606.1|Name=mRNA_Ecto-sp6_S_contig10.606.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=309bp
MLFRRLLFPAAATLARAAEVRSFTLTSGAGGGVRHLSVSPRRQQLGAFLD
GSEPLSRSSTGRTVSKVSRGMATGEGAGLGEILNLKTAQDVVDFWFGTDL
ARLASDKEYGQSFGAKWFGAGPPDQAFIGTQSASKELVAKAGSGELKGEE
WETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTV
DAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSL
VHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQS
ASKPSSPS*
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mRNA from alignment at Ecto-sp6_S_contig10:1945401..1951459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.606.1 ID=mRNA_Ecto-sp6_S_contig10.606.1|Name=mRNA_Ecto-sp6_S_contig10.606.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6059bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1945401..1951459+ (Ectocarpus species6 EcLAC_371)
GTTGTCTGTTGCACACACACGGCATCTTGAAATGCTCTTCAGGCGCCTCC
TGTTTCCAGCAGCAGCCACCTTAGCTAGGGCAGCAGAGGTTCGGAGTTTC
ACGTTGACTTCCGGAGCTGGTGGTGGCGTGCGACATCTCTCAGTGAGCCC
CCGCCGACAGCAGCTCGGTGCTTTTCTTGACGGTTCGGAACCGCTGTCGA
GATCTAGCACGTGAGAGCAAATAAAGCACCTGTTCCGGAGCGTTCAACGC
GCCTGACACCTGCAGGCGTGATTTGTGCCAATCCGCTGATACCTAACATG
GTGAACTGTAATCGATAGGGAAATTGCGATTGCACAGGTCGTAACTCATA
CTGGCGCGTGGAGGAGAGCGGATTTTTGCACCGCATTCTGAAAATCTTGC
CGTTGCGGACTTCCGTGTGTCTTTGAGCGCGGTACGCTACAAACACACAA
GCGGAGGGCGTCTGCAGGGGGAAACGAAACCAGTTAAGGTTGAAGCCAAG
AGATCCCAGTCGTCCAGAGACTGCGCTAGTGTGATGGACGCTGTCCAACG
TGCGTAGAGTAACTTTCTCCGGGGTCTCGTAGTCAGTAGTCAGTAGTCGG
GCTCTTCCAGTTGGCTGTGCGGGACAAAAAACATGATATCCCCCGCACGA
ACCGCACATTTGCATGTACGTTCAGCAGGGTGAGCGTCGTGCAGACATCC
AAAGAAATTGGAGTGATTTAAAGGACAATCTAGATTGTAGCCCAGGATAC
GCCGACGAGAAAGACCCAAAGGTTGACCCTTGGTTCACCTTTTTAGCAGT
ATGGCATATAGGGTGATGCAAATTGAGAGGAAGCCCCCAAATTACACTCT
GCTGTCATTCTGGATATGCTTTGCGTGCAAGACATTTCGTCGCCATCTAT
TTTCCCGCAAGGCTTAAGAGGGCCGAGGACAGACGCAACCGGGTGGCGTT
GGGCAAGATTGGGTAGCGAGATATGCGGTTCACGCTTTTTCACCGGCGGA
CAATGGACGACTGCCCGGGGGAAGAGCCCTCCCGCGCCCCTACAGCAGTA
GGTGTCTGTTTCTTGCAACGGAAAGGGTCAATGGAGCCCGAACGCGAACG
CGGTCCAACAAGTGTCCCCGCGGGCGAATCACTCACGCAGGAGAATAAAT
GCATGAATGCACGCTTTTTGGCTCCAGTGAACAGAACCCTCGTGGAAGTC
TGGTGAAGGCCTGGCGATGTAGCCTACCGGTACTCATTATACCGGGTTTG
CGCCATGTTCCACTCGATTCAGGATAAAATCAAAATGTATTACATGACTG
CTGTATGTGGGATGATTACATGTAACAGAAGATGGAGCGTGAGGGTTAGG
AACCTCTCATGTTATGTTTTGCTCGACGAGATGCCGGCGGTCAACTACCA
ATATTGTATATATGGAATCGACCACAAACAAGGACTTGGTTTGCTCCACA
CAGGGGACGCACAGTCTCCAAGGTCAGCAGGGGCATGGCTACCGGAGAGG
GAGCGGGTTTGGGGGAGATCTTGAACCTCAAGACCGCGCAAGACGTGAGT
AGCAAGAAAAATGCCCTTCCGTACTGCATGGTAGCATTCACGCGTTTCCA
AGTAGTGCCGGCGTATTTTCACGCGCGCGAACTGTTTCCCTGGAACAGAC
TTGTACAGGGAACACGTATTCCACGGCCATACAATTTCAATGCTACGGGG
TTGCGTTGATGGCGGCTTGAATAGTGTGGTTCCGCTACCGAAGCGTCGTT
GTACTTCCGAAAATCATCGTATGCTCTGGACGAAGACACCCAGGTAGGGC
TCCGATTGGAAAGAGAGGCCTCTGGTCTGCGGATAACTTCGAAGACTCGA
TCATTCCCACAAATCCGATTCTTCTCTGGTATATTTATCTCACATATCTT
AACTTCGGCTTGAGATATTGTCGGCTTATTCAGAATCTAAAATTCGCTTG
TCAAGACCTCGTGTCGGTTGCAGATTAGTGATTGGTGATGGTAACGGTTG
GTCGCGTGTAGTATGACACGCTGACACGTCGTGAAGGAAATGAAAAAGAT
GTTGGGCAACATCCAGAAGGCGGGCATCCTTGACTGCGTAGTTTGCAGAA
ACTCCCCTCCTTTGTAAATTGCACTTGGACACTCAAGTTtacgcTTTGAA
AGTCGAAACGCATCGCCTGTGGACGCCCTCTAGACACCGTGAGGGATTCC
TGGGAACAGTTTCGTTGAATTTTATCTTCCCACGCCTTCATGCGTTGCGC
CTTTTCTGTCTCTGAGTCCGTTTATTTTCAGCCCGACATGGTTTTGCTCA
TCTTCcgCTTTGTTTTGTCGCGATTTGACAAGGTGGTGGATTTCTGGTTC
GGCACCGACTTGGCTCGCCTGGCGTCGGACAAGGAGTACGGCCAGAGTTT
CGGCGCAAAGTGGTTCGGCGCCGGTCCACCAGACCAGGCCTTCATCGGCA
CCCAAAGTGCCTCCAAGGAGCTCGTGGCGAAGGCGGGAAGGTATTCCGTG
TACTACAGTAGCACGGGCGTTGTCGACGCGCGCAGAAGAGGGCTGAACGG
GGGTAAAGTGTCAGCCGAGGAGAGACGCGTTGTTTTTTTCCATGTGGGGT
CGATGCCTTTGAAGCGTTGTATATCTTGTAGCCGAAGGGGAACAGTGAAG
TTGGGGTGGAGCGCAGATATTTTTTGCATTATATCTACGCCGGCTATGGG
CCACAGACCGCTGAGGTTAGACCGAGATGTCGTCCCCGGAGATGGGTGCG
AGGTCACGAAACGCCTTTGCTTGGGCGGTGGTGGCTTGTTCGCCACGAAA
TAGTCGCCTTGTGCTCGTGTTTTACCACAATTCCTCCGCAAGTACGCATA
CACAGGGCGCACATTACCTCGAGTGGTGTGTCCGGTTCTTATCCATCTCC
AATGACCGCCACGTTTCTCTTGTGTATGTGGTGTGTGCACGATTTTCCTG
CAGCGGCGAGCTGAAAGGAGAAGAGTGGGAAACTCCCAAAGGGGCTCTCG
CCAGGCTTCTGCTGCTCGACCAGTTCCCTCGCACAGTCTACCGGTGAGTA
CGTGTAGTCCTCGTCTCAACGCTTGACGTCGCGCTTCGCACAATCGTTCA
TGGGCCGGAAAAAATTCGAGGGCCGAGACCAGCATGTCTTATCTTCTTCG
CCTTCCCTCTTCGACGGTGCGACTCTACTCGACTTACATGCTCCCCCCGT
TTCCGTTGTAGGGGCACGTCACAAGCGTTCGCAAATGACGAGACGGCCGC
ATCTTTGTCGCTCGAGATAATATCCAAGGGCTGGGACACCGTGGATGCCC
AAAACTACACCTTTCAGCAGCGGTTGTTCGTGTATCTCCCCCTCATGCAC
TCGGAGAGGATTGAGGCTCAGGTGACAACAATCCCTTTTCCTCGTTGGTT
TGTCTGAGTTCCGAGTTGTTTCAACGTAGATATTAATATTGCGTGTCTCG
GGTCGGAATCGCTCCGATTCATGTTGTTCACCAAGTGGTATGCTATCTAC
CGTTCGTTCAACGCTTTGCCATTATTTGGATTTCGGCGTCATAACTGGTG
ACTGTTTATCAACCTCCATTCGTTGGGCCTACATTGCCCCTCGCGCACGA
AAAAACGCTTCTTCGTTTGAGTTCCGCGTGTACACCAACCAACCGCATCT
TCGCGCGGTAGAGCCTGTTGCCGTGTGGTTGACATACGTTTCATTCTGGA
ATGCTTCACCAACATTGTGAGTGAAAATCTCGCGATTTCATTGTGGGTGC
ATGCTGTAGTTTCATCCCAATACCTCCTCGAACATAAAGACCCCAAGATT
GTCGTCTCTCTTGATACGTTCACAATGGAAATAGCCAAGCTGTTCAGAAC
ACATCCTTCGCGTGGGGGTTATACAAGAGGCGTCAGGTGTCAGCATGTTC
GTTGATCAGTCCATGACTAAACCTGTCGATTGCCAACCGTTCAAGCTTCT
CAACTTCCGTTCGATTCACAGAATAACGTTCTGGACTTCCACCGTACAAC
GGATCTTGACAACAGTTTTGCCTAACGAATTTTGTATCATTTGAATATTG
ATGCGACTACAGGACGCGGGCGTGTCCAAGGTCAAGGCCCTGGTGGACGA
CGAGATGAAGGCCACCGGTAGCGCCAATTCCTTGGTTCATGATATGGCAC
TGGAACACCGCGGAGTCGTAGCCAAGTTCGGAAGGTACAGCCGTTCAAGC
GGTCGGGCATTCGCTTTTGTGAATGTAAAACTCGAGCGTGAACAGCCCGA
TCATCTTGTCCGATTGTTATTCTTCATCGCGTGTGTTGTGGCCAAATTCA
TTTTGCGAGTAGTATGATGTCTATCTCGAAATCAACACTTGCTATTCATT
GCTATGCACCTAAACAGTTGTGACCCCATCTGCCATGCAAAGGCTACGCG
CTTATTACTTGTACAGTTAAGTTGACTGGAGTGTGGAAAGCGGAATCAGA
AAAAGAAAAATAACACTTGTCAGTTGCCTACTAGAGCAAAACCTCCCTTC
GAAAAAACCCTTTCATTCTTCGATCAATACTGTTGAATATTTGCGTCTCG
TCCGATGGAGATAGGAAACAGACACGAGTTTATGCTCTTCCCGCACCATC
CAATGAGCACAAATCAGCTACCACACTGACAGACTTGCGGACCTCAGAAA
TCGTTGCCGAGATACGCCACGTTCTCGTGTCTACGTTAGGAAATTCACAG
TTTCCTCTGGGTTCACAACGTTTGGGTTTTGTGCGGGCAATCAAGAGAAC
ATGAGGCGCTGAGACTTTTTCGCCATCGATGGCCAGACAGTTTTGCGTAG
TATGGATGATGCGGGAGGTGCCCCCACATCCTTCGTAACGAACACCCGAT
ATCTTCGGTAATTTTGTATGTTCCCGTGGTACCTGACCAAAAATGACAGG
TTTCCCCACCGCAACGCCGCACTCGGACGTGAGTCCACCCCAGAAGAGCT
GGAGTGGCTGAGCTCCGACGACATCCCAGGTTGGGCAAAGAGTCAAAGCG
CGTCCAAGCCTTCGTCGCCGAGTTGAGGTGGTTCGACGTGGTCGCGCTCA
AGTGCATCACCATATTGCCACCCCTTAGCTGCGGCTCTCTCTTTCGTAAT
AAGTTCCCCTGTCCGCATGGTGCAGTACCGAATCTCATGTTCTGGGTGTC
TGATACGGTCGCTGTTGCGATCGGGTTGTTTTTCGTGCTTTGGGTGAGAA
TTTGTTCGGTGCTTTCCGGGGCGCTGCGCTTACTTCGTACCTTCCTAGGG
AATGGGCCACTAGCCTGGTGCACATGACTCCGTCCCGTTCGCTGACGCGT
TCGGTGGCTCTGTTTACCAAGCCCTCAAGCTTTCGTTTCTTAAAAAAAAA
GAGTGACTGAAAGCCATGTACCGACAACGTAATATCAAGGTGTAGCTACA
CTAGGGCTTGCGTAGCCGTTATAGGAACATAATGAAGAGTCAAAAGAAAG
TTACTGTAGACAACTGTAGTAGAGTGGTACGATGCACCCATCGCGAGACG
TCAGGATATTTCCTAACTCTGTTGCATAGCTGGCCTGGTGCGCACCTTTG
ACAATTGACAAGGTAGGCTGCGATTGTATTTTTCTTGGGAATATCCTCTG
GTGGTTCACGTTGGTCAGCCACGAATGTCAAGCGCAACTACCCGTTCCGC
TGCACACGTTTGGAACCCTAGTGTCCGTCGCGAAGTAGTGACCGCTGCGA
ACAGAAGAGCGACTTGGCTGGGACTGAGGTTGTTTAGTGCCAGGCATGCC
GCTACGGGCAAAAAACGAGACTTCGTATTTTCTCAAAAGAATATTGTCAA
GTATCCTTACAGGTTGGAACAATGCGAGAAGCCTCGTTGGCGTGTTCACT
TCTTGTCATTTGTTCTCGTGCGTTGCGCGGTGGCACACGCAACTGAAACG
GCGGCGGACAGGATGCCGGGTAAGGCAGCAGTGCGGGTAGCTGCACACGC
GTTTCTCGGAAATCCTGCTTAGACCATGCGCGCAGGCTGCTGAGACCGGA
ACCAACCGTTGCAGTCTTACGTGGTTTGGGCAGATCCTCTTCGGAGTGCA
TACGTGGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1945401..1951459+

>mRNA_Ecto-sp6_S_contig10.606.1 ID=mRNA_Ecto-sp6_S_contig10.606.1|Name=mRNA_Ecto-sp6_S_contig10.606.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1945401..1951459+ (Ectocarpus species6 EcLAC_371)
ATGCTCTTCAGGCGCCTCCTGTTTCCAGCAGCAGCCACCTTAGCTAGGGC
AGCAGAGGTTCGGAGTTTCACGTTGACTTCCGGAGCTGGTGGTGGCGTGC
GACATCTCTCAGTGAGCCCCCGCCGACAGCAGCTCGGTGCTTTTCTTGAC
GGTTCGGAACCGCTGTCGAGATCTAGCACGGGACGCACAGTCTCCAAGGT
CAGCAGGGGCATGGCTACCGGAGAGGGAGCGGGTTTGGGGGAGATCTTGA
ACCTCAAGACCGCGCAAGACGTGGTGGATTTCTGGTTCGGCACCGACTTG
GCTCGCCTGGCGTCGGACAAGGAGTACGGCCAGAGTTTCGGCGCAAAGTG
GTTCGGCGCCGGTCCACCAGACCAGGCCTTCATCGGCACCCAAAGTGCCT
CCAAGGAGCTCGTGGCGAAGGCGGGAAGCGGCGAGCTGAAAGGAGAAGAG
TGGGAAACTCCCAAAGGGGCTCTCGCCAGGCTTCTGCTGCTCGACCAGTT
CCCTCGCACAGTCTACCGGGGCACGTCACAAGCGTTCGCAAATGACGAGA
CGGCCGCATCTTTGTCGCTCGAGATAATATCCAAGGGCTGGGACACCGTG
GATGCCCAAAACTACACCTTTCAGCAGCGGTTGTTCGTGTATCTCCCCCT
CATGCACTCGGAGAGGATTGAGGCTCAGGACGCGGGCGTGTCCAAGGTCA
AGGCCCTGGTGGACGACGAGATGAAGGCCACCGGTAGCGCCAATTCCTTG
GTTCATGATATGGCACTGGAACACCGCGGAGTCGTAGCCAAGTTCGGAAG
GTTTCCCCACCGCAACGCCGCACTCGGACGTGAGTCCACCCCAGAAGAGC
TGGAGTGGCTGAGCTCCGACGACATCCCAGGTTGGGCAAAGAGTCAAAGC
GCGTCCAAGCCTTCGTCGCCGAGTTGA
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