mRNA_Ecto-sp6_S_contig10.603.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.603.1
Unique NamemRNA_Ecto-sp6_S_contig10.603.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.603.1 vs. uniprot
Match: D7FVK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK7_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 4.730e-91
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1 
Query:    1 MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASALADKLDPKLEEIKTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL 420
            MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASAL DKLDPKLEEIKTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL
Sbjct:    1 MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASALVDKLDPKLEEIKTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVK7_ECTSI4.730e-9199.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1926498..1928719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size423
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003660.1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348712.3904555-CDS-Ecto-sp6_S_contig10:1926497..19266021682348712.3904555-CDS-Ecto-sp6_S_contig10:1926497..1926602Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1926498..1926602 -
1682348712.4001787-CDS-Ecto-sp6_S_contig10:1926916..19269841682348712.4001787-CDS-Ecto-sp6_S_contig10:1926916..1926984Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1926917..1926984 -
1682348712.4096568-CDS-Ecto-sp6_S_contig10:1927810..19279041682348712.4096568-CDS-Ecto-sp6_S_contig10:1927810..1927904Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1927811..1927904 -
1682348712.4190798-CDS-Ecto-sp6_S_contig10:1928563..19287191682348712.4190798-CDS-Ecto-sp6_S_contig10:1928563..1928719Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1928564..1928719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.603.1prot_Ecto-sp6_S_contig10.603.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1926498..1928719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.603.1

>prot_Ecto-sp6_S_contig10.603.1 ID=prot_Ecto-sp6_S_contig10.603.1|Name=mRNA_Ecto-sp6_S_contig10.603.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=141bp
MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASALADKLDPKLEE
IKTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYV
APRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:1926498..1928719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.603.1 ID=mRNA_Ecto-sp6_S_contig10.603.1|Name=mRNA_Ecto-sp6_S_contig10.603.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2222bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1926498..1928719- (Ectocarpus species6 EcLAC_371)
ATGGCACCCTCGGAGGCTCCTCTCAATGCGGAGGCAATAGCCCGCGCCGT
GACCGGCCTCCCTTCAGCGGTGTTCGTCGGGGGCGTGAGCGGGGCTCTCG
ACGCGGAAGCGAGTGCCTTGGCGGACAAGCTAGACCCCAAGCTGGAGGAG
ATCAAGGTGCGGAGCATTCAACACTCTGTACATCATCATTAGCCCGGTCT
GTTGGTGCTGTTGGTGCGATGGTTTGTAAGCGTCCAGCGTCCAGCGAAAC
TCCACGGATCCTTCCCACGCGCTCCCACCCCGTCTCTTCGCTCCCTCGGC
AAACCTACCATTTTTGTATTGTTGAAATTGGTATGGCAGTCTACAGCGGT
CACCGCACAACCTGGAGACCACTTGTACACGATATGTGCAAGCTGCTGTC
CGGTCCCGCTCATGTTACTCATTTCTCCGCATGTCACCTCCGTTTCGAAG
GGTCGACCGATATTGCTGTTCTGCGGTTGTCCCATTTCAAAAGACGCGTC
CATGTTGTCACAGCAGTGTTGGGTCGGCTTGTCAATATGCACCGACCCGT
GGGAAGAGCAAAGAGGGGAGCTTGGTGATGAACAACTTTGCTGCGATCGA
GTCCCCAACCTCTCCAACTTCAGTAAACTGCTGTGTAGCTGACATTACCA
GGTGGCGCAATTTGGTGGCGTTGGAAACCTGGCAACTTCCAACCCAGGTT
CGGGTTGCTGGTGACCCACGGATGTGTCGATTCCTCTTTTTTCGGTTTAC
CGCTACCGATACAAGCCTGACTTTTACCTTTACAAACCCGCGTTATCTAT
AAATTGCTCGCACAGACCGATATCAACGCCGCTTTGGAGCTGTGCCACTC
CGGGAACGAGCCGTCTGCTGGGGAGTGGCAAGACGACGTCGAGACCTTAA
GAGCGGGCGGTAAGAGAAGCACGGCGTGTATCGCTGTTGTAGCGATTGTC
TTTGACCTCAGGCTCGGCCCTGGCTCTCGCATACCGTTTGAATATCAAAT
ACTCAATGTAGTCGAAACGATTGAGTCCCTATGTCAGCATGATCGGGTTC
CAAGGAGTACCCTGATGGAGAAGTGGGGGCGGCTCTCTCGTGAAATCCTT
TGGTAGGAAGAGGCAGCGTCGTATTATGGGCACAACAGAGTCCCTCCACG
CGTGCCACTGTAGTCCCCTGTTGTTGGAAACCCGGTGCGTTCGCTGGAAG
GCGAGCAAAGCTCGGGCTTGGCCTGTACCAGGCCCGCCACTCTGCTGGGC
GTTGAGTGATTTAAAGCTCGAGTAAGCAGCGGTGTTGACCCCACATTTAC
CTGTGACCTTCAGTTACAACGTGTCGTTTTCGGTGGACAACGCGTCAAGG
AGGGTGTCAAGTCCCCATGACATGTGTTCCGACATCTCCCGACAAAGTTA
TCCAACGTTAACATCCTGGCCCACAATGCCGGATACCAGGCCGTCCTTTG
TTGCTCTGTCTAACACGTGGGTGCATTTGTTGCCCTGCGTTTTGCTGTTG
CGAAGATGCGCGTGGTAGACTGATGCATGCAGGATTGCGATCCTCAGCGC
GTTGTCTCAATAATCTTGCCCGCGCATTTGTTAGATTGTCGCTTGTTTCC
GGAACAGCTGTAAGTACATTTGGACCAGGGGTCAAAAAAGGATTTGGCGC
ATGATGGTTGCCGGCGTCTCTCTTGTGGCCACATGTTCGTCGTCGTTGGT
GCTTGCCGTTGCTCGCCTTTGCGCCTTTCATGCAGTGCGGTCGATCAAGA
CCATAGCGGTGAGCTTGCTGAACAACACGTACGTGGCGCCTCGGGCACGA
GAGGTGAGCTTCTATACGTGGCTGCCCCGCAAGGCGGCCCGGTCTGAAGG
CATAGCGGTGGTCCCGCGTAAAGCTTGCTCCTCGCTAATTGATTGGCAGC
GTTCGTTCCTTCTGGCTGTGCGCGCAGAGGCTGCTTTGGTGAGGACCACC
CACCGCCAGTCTCCGCGTTTAAACCGGCCGGTCATCATCTTGCGCCTGCA
ATCCAGCGTTCATTTTGTAAGTGACTCAATAATTAAACTTCTTTCCCCTC
CCTCCGTTTGTTGGGTGTTGTCGTATTGTGTGGTCCTGTTTTGCCCGGGC
TTTCCGATTCGGAAAAGCGCCTTCATCGAGAGCCCTCCCTCTCGTCCTTC
GGAGGTTCAACGAGGGCCGGGGGCGCATTGGGGCAGCCTTCCACGGACCA
AGAGTTCGTTCTAGAGTTGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1926498..1928719-

>mRNA_Ecto-sp6_S_contig10.603.1 ID=mRNA_Ecto-sp6_S_contig10.603.1|Name=mRNA_Ecto-sp6_S_contig10.603.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1926498..1928719- (Ectocarpus species6 EcLAC_371)
ATGGCACCCTCGGAGGCTCCTCTCAATGCGGAGGCAATAGCCCGCGCCGT
GACCGGCCTCCCTTCAGCGGTGTTCGTCGGGGGCGTGAGCGGGGCTCTCG
ACGCGGAAGCGAGTGCCTTGGCGGACAAGCTAGACCCCAAGCTGGAGGAG
ATCAAGACCGATATCAACGCCGCTTTGGAGCTGTGCCACTCCGGGAACGA
GCCGTCTGCTGGGGAGTGGCAAGACGACGTCGAGACCTTAAGAGCGGGCG
TGCGGTCGATCAAGACCATAGCGGTGAGCTTGCTGAACAACACGTACGTG
GCGCCTCGGGCACGAGAGCGCCTTCATCGAGAGCCCTCCCTCTCGTCCTT
CGGAGGTTCAACGAGGGCCGGGGGCGCATTGGGGCAGCCTTCCACGGACC
AAGAGTTCGTTCTAGAGTTGTAA
back to top