mRNA_Ecto-sp6_S_contig10.576.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.576.1
Unique NamemRNA_Ecto-sp6_S_contig10.576.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.576.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 9.160e-43
Identity = 81/112 (72.32%), Postives = 92/112 (82.14%), Query Frame = 1 
Query:    1 MGFSPSLFPYIPWTKHGSSKVAVEAGNSFTLPAQSHSSVGETVLHLIIQLLPLFQAFEEYCRNALCSESLMFLVDANEFNCSLHAVSKFTTSCADPESSSLPINERE-DPNF 333
            M F  SLFPYIPWTKH  SKVAVEA  S+TL +QS SS G TVL LIIQ  PLFQAFEEYCRNALCSESLMFLVDA+EFN +LHAVSKF+T+  DPES+++ +NE E +PNF
Sbjct:    1 MSFISSLFPYIPWTKHERSKVAVEA--SYTLRSQSASSAGGTVLDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFSTAGKDPESAAVAVNECEHNPNF 110
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BLAST of mRNA_Ecto-sp6_S_contig10.576.1 vs. uniprot
Match: A0A6H5JLE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.980e-29
Identity = 66/108 (61.11%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    1 MGFSPSLFPYIPWTKHGSSKVAVEAGNSFTLPAQSHSSVGETVLHLIIQLLPLFQAFEEYCRNALCSESLMFLVDANEFNCSLHAVSKFTTSCADPESSSLPINERED 324
            +GF   LFPYIPWTKHGS KVAVEA  S+TL +Q+ SS G TVL LIIQ  PLFQA      +    ESLMFLVDA+EFNCSLHAVSKFT++ ADP  +++ + E E+
Sbjct:   98 VGFISLLFPYIPWTKHGSRKVAVEA--SYTLRSQAASSAGGTVLDLIIQFPPLFQACLSPVSDCAFVESLMFLVDADEFNCSLHAVSKFTSAGADPSPAAMGVVECEE 203
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BLAST of mRNA_Ecto-sp6_S_contig10.576.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.930e-11
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 GFSPSLFPYIPWTKHGSSKVAVEAGNSFTLPAQSHSSVG----ETVLHLIIQLLPLFQAFEEYCRNALCSESLMFLVDANEFNCSLHA 255
            G    LFPY+PW KHG + VA+++     L A +H S      +  +  I++   L +AFEE+CR ALCSES++FL  A  FN S++A
Sbjct:  253 GIMAKLFPYVPWRKHGGT-VAIDSAECMVLAASTHCSKSTVKLDDAMEEILRCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVYA 339
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BLAST of mRNA_Ecto-sp6_S_contig10.576.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.140e-9
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:   16 SLFPYIPWTKHGSSKVAVEAGNS---FTLPAQSH-SSVG-ETVLHLIIQLLPLFQAFEEYCRNALCSESLMFLVDANEFNCSLHA 255
            SLFPY+PWT   S  VA++  N    FT P+ S  +SV  +  L  I++  PL +AF E+CR ALCSESLMFL    +F+ SL A
Sbjct:  311 SLFPYVPWTTR-SGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDA 394
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BLAST of mRNA_Ecto-sp6_S_contig10.576.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.540e-6
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:   22 FPYIPWTKHGSSKVAVEAGNSFTLPAQSH--SSVGETVLHLIIQLLPLFQAFEEYCRNALCSESLMFLVDANEFNCSLHAV 258
            FPY+PW +  S KVAV    +  +   S   S++    L  II   PL +AF+ +C+ ALC ES++ L +   F  S++AV
Sbjct:  350 FPYVPWRRSASGKVAVGMNETMHVTCTSRPLSTIQLGRLETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAV 430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FN97_ECTSI9.160e-4372.32RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLE7_9PHAE3.980e-2961.11RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLA9_ECTSI2.930e-1142.05RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE3.140e-948.24RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYZ5_ECTSI1.540e-637.04RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1636851..1638372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score150.6
Seed ortholog evalue4.6e-34
Seed eggNOG ortholog2880.D7FN97
Model size440
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-15_003490.1
Cds size354
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348709.9720435-UTR-Ecto-sp6_S_contig10:1636850..16369361682348709.9720435-UTR-Ecto-sp6_S_contig10:1636850..1636936Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1636851..1636936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348709.9821625-CDS-Ecto-sp6_S_contig10:1636936..16370861682348709.9821625-CDS-Ecto-sp6_S_contig10:1636936..1637086Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1636937..1637086 -
1682348709.9908795-CDS-Ecto-sp6_S_contig10:1637355..16373941682348709.9908795-CDS-Ecto-sp6_S_contig10:1637355..1637394Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1637356..1637394 -
1682348710.000403-CDS-Ecto-sp6_S_contig10:1638207..16383721682348710.000403-CDS-Ecto-sp6_S_contig10:1638207..1638372Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1638208..1638372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.576.1prot_Ecto-sp6_S_contig10.576.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1636937..1638372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.576.1

>prot_Ecto-sp6_S_contig10.576.1 ID=prot_Ecto-sp6_S_contig10.576.1|Name=mRNA_Ecto-sp6_S_contig10.576.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp
MGFSPSLFPYIPWTKHGSSKVAVEAGNSFTLPAQSHSSVGETVLHLIIQL
LPLFQAFEEYCRNALCSESLMFLVDANEFNCSLHAVSKFTTSCADPESSS
LPINEREDPNFARSSPP*
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mRNA from alignment at Ecto-sp6_S_contig10:1636851..1638372-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.576.1 ID=mRNA_Ecto-sp6_S_contig10.576.1|Name=mRNA_Ecto-sp6_S_contig10.576.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1522bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1636851..1638372- (Ectocarpus species6 EcLAC_371)
ATGGGTTTCAGCCCGTCACTCTTCCCCTACATCCCGTGGACGAAGCACGG
GAGCAGCAAAGTTGCAGTCGAGGCCGGAAACAGTTTCACCTTGCCAGCCC
AGTCCCACAGCTCTGTGGGTGAAACCGTGCTGCATCTGATCATCCAACTC
CTACCATTATTCCAGGTATGTTTATCGCTTGTGTTCGATTTCGCCGTCGT
GTTCTGTTGTCTGAAAGAAGCCCGGGTTTGTACTTCAGGAGATTTCCTTC
TGAGCATATTGAAACCAATAGCTATGTAGCACTGATATTCCCCGGTAGCT
TTGCTGTCGACACAACAACAGCATGTCGTAGCAAATTGTTCCTGGTTAAA
TCAGTGCAGCAGTAGAAGTAGAAAGAGTATCCAAACGATCGGGTATCGGT
TTAGTTCCAGCTGAAGTAGCAGCAACCGTATCTGCAGGGATGCGAAGCAT
GTAGCCGAAACTGTGATGGGCTGCTGCCATTCCCGGCCAGTTAGAATCTT
GGTTCGTTCCCACAGACCCCAATACTTCGGTGAAGGCGGAGCGAAGGTCA
CGTAGAACCGCCACATATTGCTTGAGCTTTTGTTGTCGAGGTACTGCACA
AGCACGCACGTCCCCCTTGTGTGCAATCCTCCTCATTACCGTCCACGCGA
AACACCTAGGGTCAGCCGGTAGTACCGTCTTTCGTATCCATCGATTCCAA
GGCTCACCAAGCTGCAAAGACCTCTAGTGTGTACCTCTGTTTGTGAGGTG
CGCGTCGGCCTACGGAAATTTCTTTGCAAATACCGCTGTCTACCAACGCG
CGTACGCCCAATACTACATGGACATCGATAGTCTAGCCGGGCAACGGCGA
CCGTTGTCGGAACCCACGGAGCAAACACGCGTTACGTCGTGGCAGATTTT
GCCGTTGCTTTCGCCGTACATCCAAAGCCCATCGCCATACGTCCCTTGCC
GAACGGAATGCGTCTCTGCCATTCTCAGGCGTTTGAAGAGTACTGTCGGA
ACGCATTGTGCAGCGAGGTGAGAATCGTCCTTAGTCTAAGACCCCACACC
GGCGGAATGATTGGAACAAGGGTTGCTGTAGACATTGCGTGGCACCAATT
GTAAGCAAATCAGCATTCGCATATTATCCATTTCTCTGCAGGGAATAGCC
TTACCATTGGCGCCCGCAAGAACGAAACTAGGCAGAGCTAGCCACTCGCC
GCCGTTCACGTTCTGAAACATGTCTTCCTGACGTTTGTGTTTTCTTCCCA
AGTACCCATTCTCTCTGGTTATTTTACGATGCCCAGTCGCTGATGTTTCT
GGTGGACGCGAACGAATTCAACTGTTCTCTTCATGCCGTGTCCAAATTTA
CTACTAGTTGCGCCGATCCTGAGTCTTCTTCGTTGCCTATCAACGAGCGC
GAGGACCCCAACTTCGCGAGAAGTTCGCCGCCATAGTAGACAAATACGTC
CGGGAGGGTTCTACGTTCGAAGTTAACATCGAGAGTAACTCAGAAACGAG
ATTCACAGGGAGGTGGACCGCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1636851..1638372-

>mRNA_Ecto-sp6_S_contig10.576.1 ID=mRNA_Ecto-sp6_S_contig10.576.1|Name=mRNA_Ecto-sp6_S_contig10.576.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1636851..1638372- (Ectocarpus species6 EcLAC_371)
ATGGGTTTCAGCCCGTCACTCTTCCCCTACATCCCGTGGACGAAGCACGG
GAGCAGCAAAGTTGCAGTCGAGGCCGGAAACAGTTTCACCTTGCCAGCCC
AGTCCCACAGCTCTGTGGGTGAAACCGTGCTGCATCTGATCATCCAACTC
CTACCATTATTCCAGGCGTTTGAAGAGTACTGTCGGAACGCATTGTGCAG
CGAGTCGCTGATGTTTCTGGTGGACGCGAACGAATTCAACTGTTCTCTTC
ATGCCGTGTCCAAATTTACTACTAGTTGCGCCGATCCTGAGTCTTCTTCG
TTGCCTATCAACGAGCGCGAGGACCCCAACTTCGCGAGAAGTTCGCCGCC
ATAG
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