mRNA_Ecto-sp6_S_contig10.575.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI) HSP 1 Score: 372 bits (955), Expect = 2.600e-121 Identity = 230/242 (95.04%), Postives = 233/242 (96.28%), Query Frame = 2 Query: 287 GAGAVGYTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRQKASVKTRKAGGXXXXXXXXXXXXXXXXVSGSESESDTTHTIRSARRKMTPEERKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKLLKRKKDEAKSAAVAARKGTPAPTAALPKNDKNVKAGPGNKQPAVRAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDAR 1012
GAGAVG TVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGR+KASVKTR+AG XXXXXXXXXXXXXXX VS SESESDTTHTIRSARRKMTPE+RKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKLLKRKK EAKSAAVAARKGTPAPTAAL KND NVKAGP NKQPA RAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDAR
Sbjct: 96 GAGAVGSTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRKKASVKTREAGXXXXXXXXXXXXXXXXKVSESESESDTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKLLKRKKGEAKSAAVAARKGTPAPTAALHKNDNNVKAGPSNKQPAGRAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDAR 337
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE) HSP 1 Score: 231 bits (588), Expect = 2.640e-66 Identity = 177/348 (50.86%), Postives = 201/348 (57.76%), Query Frame = 2 Query: 242 KGRPPDPQGTTVDASGAGAVGYTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRQKASVKTRKAGGXXXXXXXXXXXXXXXXVSGSESESDTTHTIRSARRKMTPEERKQLTEISKSTCPDRMKERNAALAAADEVSRKRE------------AKLLKRKKDEAKSAAVAARKGTPAPTAALPKNDKNVKAGPGNKQPAVRAAPAAA-------------------------SLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARPSHKMTSKTTTHKAPAMAKLTKARIAPLTTFGPA*CGNGARHCIVYA*PASRAS 1174
KG P +G + AGA G VDL TEQRGE+G RKKASKGASGDPLDVDSG SEQ APKG+QKASVKTRKA XXX SDTTH++RSARRK+TPE+ K+LTE+SKSTCPDR+KERNAA AAADEVSRKR AKLLKRKK +AKSAAVAARK A PG K+ A P+AA +LD CKNDQANRLTASE SFLKKLLAKQ+G ESGD EEDDDESVD L+DAR ++ + K + +PL F R C+ A P +AS
Sbjct: 86 KGGRPTRKGQRPTSPRAGAAGSPVDLVTEQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKQKASVKTRKAEXXXX--------------------SDTTHSLRSARRKVTPEQGKKLTEVSKSTCPDRIKERNAAFAAADEVSRKRVRQAVLAQEGVEGAKLLKRKKAKAKSAAVAARK-----------------APPGTKKAAATLDPSAAKSKTSLNXXXXXXXXXXXXXXXXXXNLDSCKNDQANRLTASEKSFLKKLLAKQNGVESGDLEEDDDESVDDLEDARAEPHGDLESYDSQGAGDGKADEDEDSPLDHF---------RDCLAAALPWKKAS 387
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI) HSP 1 Score: 223 bits (569), Expect = 9.240e-64 Identity = 189/360 (52.50%), Postives = 215/360 (59.72%), Query Frame = 2 Query: 242 KGRPPDPQGTTVDASGAGAVGYTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRQKASVKTRKAGGXXXXXXXXXXXXXXXXVSG-----SESESDTTHTIRSARRKMTPEERKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKL-----LKRKKDEAKSAAVAARKG-----TPAPTAALPKNDKNVKAGPGNKQPAV-------------------------RAAPAAASLDPCKNDQA----------------------------NRLTASESSFLKKLLAKQHGTESGDSEEDD-DESVDHLQDARPSHKMTSKTTTHKAPAMAKLTKARIAPLTTFGPA 1114
KG P +G + AGA G VDL EQRGE+G RKKASKGASGDPLDVDSG SEQ AP+G++KASVKTRKAG XXXXXXXXXXXXXXX SESESDTT T+RSARRK+TPE+RK LTE+SKSTCPDR+KER+AA AA +E R+ +L RKK EAKSA VAA+K TPAPTAA NDKNVKA PG K+PA RAAPAAA+LDP KNDQA NR TAS S++KKLLAKQ+ ESGDSEE D DESVD L+DAR ++ + + PL FGPA
Sbjct: 110 KGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPA 469
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI) HSP 1 Score: 194 bits (494), Expect = 4.890e-55 Identity = 99/114 (86.84%), Postives = 104/114 (91.23%), Query Frame = 1 Query: 1114 VMREWRAALHRLRLTRIEGVNASITAIQNDSKDRDGNVVKALVGNPMPTAKRWLLQLAAVDVCHDDTCCPETKLLKDAIKTHPIKAGATETPDASGKPTSAKGKDGKSKPKRSK 1455
VMREWRAALHRLRLTRIEGVNA+IT IQNDSKDRDGNVVKALVGNPMPTAKRWL QLAAVDVCHD TCCPETKLLKDA+KTHPI+A TETP AS KPT+AK K GK+K KRSK
Sbjct: 168 VMREWRAALHRLRLTRIEGVNAAITTIQNDSKDRDGNVVKALVGNPMPTAKRWLFQLAAVDVCHDGTCCPETKLLKDAVKTHPIEADDTETPVASAKPTNAKRKGGKTKRKRSK 281
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE) HSP 1 Score: 181 bits (459), Expect = 3.210e-49 Identity = 145/266 (54.51%), Postives = 164/266 (61.65%), Query Frame = 2 Query: 230 PDGE-KGRPPDPQGTTVDASGAGAVGYTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRQKASVKTRKAGGXXXXXXXXXXXXXXXXVSGSESESDTTHTIRSARRKMTPEERKQLTEISKSTCPDRMKERNAALAAADEVSRKR----------------EAKLLKRKKDEAKSAAVAARKG-----TPAPTAALPKNDKNVKAG-------------------------PGNKQPAVRAAPAAASLDPCKNDQ 886
PD + KG P +G + AGA G VDL EQRGE+G RKKAS+GASGDPLDVDS EQ APKG++KASVKTR A G XXXXXXX DTTHT+RSARRK+ PE+RK+LTE+SKSTC D++KER+AA AA +EVS+KR EAKLLKRKK EAKSAAVAARK TPA TAAL NDKNVKA PG K+ A RAAPAAA+LDP KNDQ
Sbjct: 81 PDNQRKGGRPTRKGQRSTSPRAGAAGPPVDLAREQRGEEGATRKKASRGASGDPLDVDSVGPEQPAPKGKKKASVKTRNACGKKVSEPVSEXXXXXXX--------DTTHTLRSARRKVPPEQRKKLTEMSKSTCSDQIKERDAAFAAHNEVSKKRKSNIGVLELPARVDAKEAKLLKRKKGEAKSAAVAARKARTTKETPALTAALRYNDKNVKAPFGTKKPAATLDPSAAKSKKRLNKALPGTKKSAERAAPAAANLDPSKNDQ 338
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI) HSP 1 Score: 145 bits (366), Expect = 5.390e-36 Identity = 107/160 (66.88%), Postives = 122/160 (76.25%), Query Frame = 2 Query: 242 KGRPPDPQGTTVDASGAGAVGYTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRQKASVKTRKAGGXXXXXXXXXXXXXXXXVSG-----SESESDTTHTIRSARRKMTPEERKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKL 706
KG P +G + AGA G VDL EQRGE+G RKKASKGASGDPLDVDSG SEQ AP+G++KASVKTRKAG XXXXXXXXXXXXXXX SESESDTT T+RSARRK+TPE+RK LTE+SKSTCPDR+KER+AA AA +E R+ +L
Sbjct: 151 KGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXVSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRL 310
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Match: A0A6H5JAW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW4_9PHAE) HSP 1 Score: 120 bits (302), Expect = 3.130e-29 Identity = 71/125 (56.80%), Postives = 78/125 (62.40%), Query Frame = 1 Query: 1090 PLDHFRACV-------------MREWRAALHRLRLTRIEGVNASITAIQNDSKD-RDGNVVKALVGNPMPTAKRWLLQLAAVDVCHDDTCCPETKLLKDAIKTHPIKAGATETPDASGKPTSAKG 1422
PLDHFRAC+ MREWRAALHRLR TRIEGVNA+ +D KD DG + RWL Q AAVDVCHDDTCCPE KLLKDA+KTHPI+A TE P AS +P S G
Sbjct: 11 PLDHFRACLAAALPWKKASLKMMREWRAALHRLRNTRIEGVNAA----HDDPKDSEDGEWL------------RWLRQRAAVDVCHDDTCCPEAKLLKDAVKTHPIEADDTEEPVASAEPKSEAG 119
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Match: A0A6H5JHM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM4_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.100e-25 Identity = 83/189 (43.92%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 1048 QGAGDGEADEGEDRPLDHFRACV-------------MREWRAALHRLRLTRIEGVNASITAIQNDSKDRDGNVVKALVGNPMPTA---------------------------------------------KRWLLQLAAVDVCHDDTCCPETKLLKDAIKTHPIKAGATETPDASGKPTSAKGKDGKSK 1440
QGAGDG+ADE ED L HFRAC+ MREWR AL+R NDSKD DGNVV+ALVGNPMP + +RWLL LAAV+VCHDDT PETKLLKDA+ HPI A TE P AS KP SA+ K GK+K
Sbjct: 10 QGAGDGKADEIEDPSLVHFRACLAGALPWKKASLKAMREWREALYR-----------------NDSKDGDGNVVEALVGNPMPASNRRLHVLAHHSPSSFLCACTCTVGWLINLDVLPVLPWPAFLPCHPRRWLLLLAAVNVCHDDTWYPETKLLKDAVNMHPIVADDTEKPVASAKPKSAERKGGKTK 181 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.575.1 >prot_Ecto-sp6_S_contig10.575.1 ID=prot_Ecto-sp6_S_contig10.575.1|Name=mRNA_Ecto-sp6_S_contig10.575.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=256bp MRKKASKGASGDPLDVDSGASEQSAPKGRQKASVKTRKAGGKKKAHAKVKback to top mRNA from alignment at Ecto-sp6_S_contig10:1618905..1624637- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.575.1 ID=mRNA_Ecto-sp6_S_contig10.575.1|Name=mRNA_Ecto-sp6_S_contig10.575.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5733bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1618905..1624637- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1618905..1624637- >mRNA_Ecto-sp6_S_contig10.575.1 ID=mRNA_Ecto-sp6_S_contig10.575.1|Name=mRNA_Ecto-sp6_S_contig10.575.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1618905..1624637- (Ectocarpus species6 EcLAC_371)back to top |