mRNA_Ecto-sp6_S_contig10.570.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.570.1
Unique NamemRNA_Ecto-sp6_S_contig10.570.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.570.1 vs. uniprot
Match: D7FN94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN94_ECTSI)

HSP 1 Score: 494 bits (1273), Expect = 4.970e-172
Identity = 291/353 (82.44%), Postives = 297/353 (84.14%), Query Frame = 1 
Query:    1 MIAARNSALAQSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEMRTTPLPPTWTIEEIGASQTTP-RASRFTTTSSITSYTADREADLSASAIAPRLEYVNRVTRERTCTHPGTPYFLRAVERQRVSNQRQRRGEVMVVSGTSPKANNSNHNSIIDTMDWSLPSKTSHPDEDGHAGRGGAPSTSTIHDDTATMDXXXXXXXXXXXXXXXXSSKVRVVRRDKPGVGSGTVATSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTSWWHETTTGTENTVNRKHASIRYSTANGSLEVELEDVPAIFEVSHATGRYGRVGTVDVRVGAQLLILGRQMRLMQ 1056
            MIAARNS +AQSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEMRTTPLPPTWTIEEIGASQTTP RASRFTT S ITSYTADREA+LSASAIAPRLEYVNRVTRERTCTHPGTPYFLRAVERQRVSNQRQRRGEV+VVSGTSPKANNSNHNSIIDTMDWSLPS TSHPDEDGHAGRGGAPS  T+HDDTATMD                SSKVRVVRRDKPGVGSGT                             XXXXXXXXXXXXXXX  FTSWWHETTTGTENTVNRKHASIRYSTANGSLEVELEDVPAIFEVSHATGRYG+VG VD+RVGAQL ILGRQMRLMQ
Sbjct:    1 MIAARNSVVAQSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEMRTTPLPPTWTIEEIGASQTTPPRASRFTTRS-ITSYTADREANLSASAIAPRLEYVNRVTRERTCTHPGTPYFLRAVERQRVSNQRQRRGEVVVVSGTSPKANNSNHNSIIDTMDWSLPSTTSHPDEDGHAGRGGAPSIGTVHDDTATMDDDQPVASTTDSGTNN-SSKVRVVRRDKPGVGSGTSLAEQ------EQDNGAERGSTHRKRAPSXXXXXXXXXXXXXXXLVFTSWWHETTTGTENTVNRKHASIRYSTANGSLEVELEDVPAIFEVSHATGRYGKVGAVDIRVGAQLSILGRQMRLMQ 345
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BLAST of mRNA_Ecto-sp6_S_contig10.570.1 vs. uniprot
Match: A0A6H5KUJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ0_9PHAE)

HSP 1 Score: 374 bits (959), Expect = 1.980e-124
Identity = 267/336 (79.46%), Postives = 279/336 (83.04%), Query Frame = 1 
Query:    1 MIAARNSALAQSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEMRTTPLPPTWTIEEIGASQTTPRASRFTTTSSITSYTADREADLSASAIAPRLEYVNRVTRERTCTHPGTPYFLRAVERQRVSNQRQRRGEVMVVSGTSPKANNSNHNSIIDTMDWSLPSKTSHPDEDGHAGRGGAPSTSTIHDDTATMDXXXXXXXXXXXXXXXXSSKVRVVRRDKPGVGSGTVATSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTSWWH----------ETTTGTENTVNRKHASIRYSTANGSLEVELEDVPAIFEVSHATGR 978
            MIAARNSA+ QSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEM+TTPLPPTWTIEEIGA QTT R+SRFTTT S TS+TAD EA+L AS IAP+LEYVNR+TRERTCTHPGTPYFLRAVE+QRVSNQRQRRGEV+VVSGTSPKANNS H  IIDTMDWS P  T+HP+ED HAG+G AP  STIHDDTA MDXXXXXXXXXXXXXXXX                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   FTSWWH          ETTTGTENTVNRKHASIRYS ANGSLEVELEDVPAIFEVSHATGR
Sbjct:    1 MIAARNSAVVQSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEMQTTPLPPTWTIEEIGAGQTTSRSSRFTTTGSTTSHTADSEANLPASTIAPKLEYVNRLTRERTCTHPGTPYFLRAVEQQRVSNQRQRRGEVVVVSGTSPKANNSKHKCIIDTMDWSFPLTTTHPEEDRHAGQGSAPRVSTIHDDTAAMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLVFTSWWHVRRCSSSRTAETTTGTENTVNRKHASIRYSAANGSLEVELEDVPAIFEVSHATGR 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN94_ECTSI4.970e-17282.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUJ0_9PHAE1.980e-12479.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1572572..1575549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1060
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003450.1
Cds size1059
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348709.3802643-CDS-Ecto-sp6_S_contig10:1572571..15726901682348709.3802643-CDS-Ecto-sp6_S_contig10:1572571..1572690Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1572572..1572690 +
1682348709.3983684-CDS-Ecto-sp6_S_contig10:1572948..15734671682348709.3983684-CDS-Ecto-sp6_S_contig10:1572948..1573467Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1572949..1573467 +
1682348709.4078522-CDS-Ecto-sp6_S_contig10:1573661..15738661682348709.4078522-CDS-Ecto-sp6_S_contig10:1573661..1573866Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1573662..1573866 +
1682348709.4161072-CDS-Ecto-sp6_S_contig10:1574644..15747781682348709.4161072-CDS-Ecto-sp6_S_contig10:1574644..1574778Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1574645..1574778 +
1682348709.425229-CDS-Ecto-sp6_S_contig10:1575467..15755491682348709.425229-CDS-Ecto-sp6_S_contig10:1575467..1575549Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1575468..1575549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.570.1prot_Ecto-sp6_S_contig10.570.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1572572..1575549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.570.1

>prot_Ecto-sp6_S_contig10.570.1 ID=prot_Ecto-sp6_S_contig10.570.1|Name=mRNA_Ecto-sp6_S_contig10.570.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=353bp
MIAARNSALAQSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEMRTTP
LPPTWTIEEIGASQTTPRASRFTTTSSITSYTADREADLSASAIAPRLEY
VNRVTRERTCTHPGTPYFLRAVERQRVSNQRQRRGEVMVVSGTSPKANNS
NHNSIIDTMDWSLPSKTSHPDEDGHAGRGGAPSTSTIHDDTATMDDDDQP
VASTTDSGTNNSSKVRVVRRDKPGVGSGTVATSSLAEEEQEQDNGAERGS
TQRKRAPSSGGKGGKRRTPPPKWLVFTSWWHETTTGTENTVNRKHASIRY
STANGSLEVELEDVPAIFEVSHATGRYGRVGTVDVRVGAQLLILGRQMRL
MQA
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mRNA from alignment at Ecto-sp6_S_contig10:1572572..1575549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.570.1 ID=mRNA_Ecto-sp6_S_contig10.570.1|Name=mRNA_Ecto-sp6_S_contig10.570.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2978bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1572572..1575549+ (Ectocarpus species6 EcLAC_371)
ATGATCGCCGCAAGGAACTCTGCGCTCGCCCAATCGAAGCCGAAGCCACC
TCCAATGCCTTCGCTAGAAGCCATCGCGAAGTTGATAGGAGTCAATCTGG
AATCGGAGCCAGAGTTAACGTGAGCAAAGGAAGTTGTGCACAGTGACACC
CATTTCTTCAGCTTACCTAAACCCAAGGAGTAAGCCACAGAGAGAGCTCG
CGTGGCGCCCGTCATGCTACAAAAGCTTATCAGCCAGAAACAGCGTCTTC
CACAAAGCTGCTGGGTACACTCGATGTCCTCTCGTCCGTTGATGTCGCAA
CACTTGATGATGTTATCGCCACACATTAGCCCCGTAAGACCCACCGTCGC
GCCGATAAACGCCGCTCGGTGAATCAGGCACATCGTATCGGAGATGCGGA
CTACTCCGTTACCACCGACGTGGACAATCGAGGAGATCGGCGCCAGCCAA
ACAACACCGAGAGCGTCACGCTTCACGACCACAAGCAGCATTACTAGCTA
CACCGCCGACAGGGAAGCCGACCTATCAGCGTCAGCCATCGCCCCCAGGT
TGGAGTACGTCAACCGGGTAACGAGAGAACGGACGTGTACGCACCCGGGG
ACGCCGTACTTCCTTCGCGCCGTTGAGCGGCAGAGGGTCAGCAACCAGCG
TCAGCGTCGCGGAGAAGTTATGGTTGTGTCCGGCACGTCGCCAAAGGCCA
ATAACAGCAATCACAACAGCATCATTGACACCATGGATTGGTCGCTCCCG
TCGAAAACTTCCCACCCGGATGAAGACGGCCACGCAGGTCGAGGCGGTGC
TCCTAGCACTAGCACTATCCATGACGACACCGCCACCATGGACGACGATG
ACCAACCGGTGGCGTCGACCACCGATTCCGGTACAAACAACAGCAGGTGA
TCCGGGTGTGCGTGTTCCATACGTCCCACAAGGAGTGCTGCTCGTACCTC
TACAATGGTGACAGAGCCTTGCTGCTTAGATTTGGCCAGCTGAGTACACA
ACGCTCGATAATAAGTACGGCGGTCGTGCAAGACTGACTCGTTGCGGTAA
TACTGTAACTCGTCCGATTGTGCTCCCGATATGTTTGCAGTAAGGTGCGG
GTGGTCCGCAGGGACAAGCCAGGGGTGGGCAGCGGTACGGTGGCGACGTC
GAGTTTAGCCGAGGAAGAACAAGAACAAGACAACGGGGCAGAGAGAGGAT
CAACTCAACGAAAGCGCGCGCCGAGTTCGGGAGGCAAGGGTGGCAAGCGG
AGAACGCCCCCACCTAAATGGCTGGTCTTCACTTCTTGGTGGCACGTGAG
GAGATGTTCTTGCAGCGGTGCCGCGAACAGAGATATCATCCGTTTCTTGT
CCTCCGTGATAGGCCTCGTTGTCCTCACCCATATCTTATTTTTTCCAGGC
ACCGGCCACGGGGAAGCCGACGAACACTTTGCTGGTGCTCATTCTCACAA
GCCTTGGGCCAGACTGCCGTCGGCAAGCTGTTTCCCCAAGTCAGTCTTCG
ATACCTTTTAAAGCCGATAGCAGTTAACTCCTACTCATAGACCAACTTAC
CTCCCGAGCATGGACTGTTATCCAGACCACCATCGCGGATGAACAGGCAC
TCACCAGATCAACAACGTGCAGCAGAACAGCAGAACTGATATGGGTAGGC
AATAGATGAACTGAAACTACCGACTACCTGAAATCATCTCGCATATGCCC
TTTAACTCGCAAGAAATTGATGCCCACCGCCAATCAGTCCACCAACATCT
CGCCATCTCCTTGGCTGCCTTGTCGTGAATAGTCTCTGGTATTTGGGCGT
ACTGTCGATATTACAACCTTAGGTTGTATTGTCCCGTTGAACGTTTGTTC
CTGCGCTCACTCGCTTGCCTTTGAAATCATGCAACCGTGCCCCACATGTC
TGCGTCACGCGTGCGTGCGCGTCTCGCTTCTTGCTCTACCACGAATATAC
AACATTTCACATCTCCGTACCGGGCCACAGCCTCTTTTGGGTTCGGTCCA
TCTCCCAGACCAACACTAACATAAACCTTCCGACTCCTCGGGATGCTATT
GTACCCGATCGCATCCGAGACAGGAGACCACTACCGGGACAGAGAACACC
GTGAACCGCAAGCACGCCTCCATACGATACTCTACAGCCAACGGATCTCT
CGAGGTGGAGCTTGAGGATGTCCCGGCCATTTTCGAGGTCTCGCATGCCA
CGGGGAGGTGAGCAGCTCTTTTTGTCATTTTGCTGGCCTGGGCTGTTTCC
GGGACAGACACATGTAGGCGTTGGAGAAAATTGCTCGCCGGGATACGGCC
GCGGAGGCTCATGGGAATGATGACCTTCACGGGTGGTGCCTCTTGCATAG
TTGATGTATATTATACAGACGATGTTTTTTCAGGTCTGCAAAACGCACAA
ATTATGTGGTTCCAACGACACCAGCTGTCTGCGTGAATAAGGCTTTCGTG
GTCGACGTAGGTAGAGGTAGTTTTACACAACCACGTGAACCGACGAACCC
GGCCTTTCGGGCCCGATTTTGGCTTTGTGGGGATGCAAGATCACCGACCT
GACGACGAGTATGAATGGACGTTTTGCATGGTTCAAGAACCGTCCCCCTC
TTCAGTAACCCCCACATTGTACATACTGAAGTGTCAATCGTCGAATCCAG
TTTCAAGAAAGAAGAAACGCTCCGCACCCCATGTCGCTTGGCTACATTCG
TTGTTTGTACAATCATTGCGACTCTGAGTGACAACGTTGCACGGCGTGTT
CGTTGCCCGCAAAAATAAACCTTCCTCACGCTACTTTCGCGCTCTGGCTC
TGGCCCTTCCATGCACTCCCATACTTCGGATCGCACGAGGTCCGTCCCAA
TTCAGCAGTATCATTGTTCCCCCTTTCGTGCAACTGCCGCAACAAGGTAC
GGAAGGGTGGGCACTGTCGACGTCCGTGTGGGGGCTCAGCTATTGATCTT
GGGGCGTCAGATGCGGCTGATGCAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1572572..1575549+

>mRNA_Ecto-sp6_S_contig10.570.1 ID=mRNA_Ecto-sp6_S_contig10.570.1|Name=mRNA_Ecto-sp6_S_contig10.570.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1572572..1575549+ (Ectocarpus species6 EcLAC_371)
ATGATCGCCGCAAGGAACTCTGCGCTCGCCCAATCGAAGCCGAAGCCACC
TCCAATGCCTTCGCTAGAAGCCATCGCGAAGTTGATAGGAGTCAATCTGG
AATCGGAGCCAGAGTTAACGCACATCGTATCGGAGATGCGGACTACTCCG
TTACCACCGACGTGGACAATCGAGGAGATCGGCGCCAGCCAAACAACACC
GAGAGCGTCACGCTTCACGACCACAAGCAGCATTACTAGCTACACCGCCG
ACAGGGAAGCCGACCTATCAGCGTCAGCCATCGCCCCCAGGTTGGAGTAC
GTCAACCGGGTAACGAGAGAACGGACGTGTACGCACCCGGGGACGCCGTA
CTTCCTTCGCGCCGTTGAGCGGCAGAGGGTCAGCAACCAGCGTCAGCGTC
GCGGAGAAGTTATGGTTGTGTCCGGCACGTCGCCAAAGGCCAATAACAGC
AATCACAACAGCATCATTGACACCATGGATTGGTCGCTCCCGTCGAAAAC
TTCCCACCCGGATGAAGACGGCCACGCAGGTCGAGGCGGTGCTCCTAGCA
CTAGCACTATCCATGACGACACCGCCACCATGGACGACGATGACCAACCG
GTGGCGTCGACCACCGATTCCGGTACAAACAACAGCAGTAAGGTGCGGGT
GGTCCGCAGGGACAAGCCAGGGGTGGGCAGCGGTACGGTGGCGACGTCGA
GTTTAGCCGAGGAAGAACAAGAACAAGACAACGGGGCAGAGAGAGGATCA
ACTCAACGAAAGCGCGCGCCGAGTTCGGGAGGCAAGGGTGGCAAGCGGAG
AACGCCCCCACCTAAATGGCTGGTCTTCACTTCTTGGTGGCACGAGACCA
CTACCGGGACAGAGAACACCGTGAACCGCAAGCACGCCTCCATACGATAC
TCTACAGCCAACGGATCTCTCGAGGTGGAGCTTGAGGATGTCCCGGCCAT
TTTCGAGGTCTCGCATGCCACGGGGAGGTACGGAAGGGTGGGCACTGTCG
ACGTCCGTGTGGGGGCTCAGCTATTGATCTTGGGGCGTCAGATGCGGCTG
ATGCAGGCA
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