mRNA_Ecto-sp6_S_contig10.565.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.565.1 vs. uniprot
Match: D7FN92_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN92_ECTSI) HSP 1 Score: 503 bits (1295), Expect = 8.350e-166 Identity = 282/297 (94.95%), Postives = 284/297 (95.62%), Query Frame = 1
Query: 1 MFHPMTTNKTGNDLEQAPPATIAAQQESVARDPSPPASAAALGPSMSPGAXXXXXXXXXPTSHSIPPRPIPIPPDHEAPAAENVTSDNPTPSQQLEEEETGRSQRDSSSXXXXXXXXXXXXXXSYGAAQSAMPRNFRISLDGYTLRTDGDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGFLDERASMMGVQTQIGEVLDQMDRMSSLCVDLQHQLSLSQVQVQGQNELVENLCRRLQQ 891
M HPMTTNK GNDLEQAPPATIAAQQE+ R PSPPAS AALGPSMSPGA XXXXXX PTSHSIPPRPIPIPPDHEAPAAENVTSDNPTPSQQLEEEETGRSQRDSSS XXXXXXXXXXXSYGAAQS MPRNFRISLDGYTLRTDGDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGFLDERASMMGVQTQIGEVLDQMDRMSSLCVDLQHQLSLSQ+QVQGQNELVENLCRRLQQ
Sbjct: 1 MLHPMTTNKAGNDLEQAPPATIAAQQENATRAPSPPASVAALGPSMSPGAAAXXXXXXPPTSHSIPPRPIPIPPDHEAPAAENVTSDNPTPSQQLEEEETGRSQRDSSSGAGXXXXXXXXXXXSYGAAQSLMPRNFRISLDGYTLRTDGDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGFLDERASMMGVQTQIGEVLDQMDRMSSLCVDLQHQLSLSQMQVQGQNELVENLCRRLQQ 297
BLAST of mRNA_Ecto-sp6_S_contig10.565.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE) HSP 1 Score: 451 bits (1159), Expect = 1.640e-142 Identity = 255/297 (85.86%), Postives = 260/297 (87.54%), Query Frame = 1
Query: 1 MFHPMTTNKTGNDLEQAPPATIAAQQESVARDPSPPASAAALGPSMSPGAXXXXXXXXXPTSHSIPPRPIPIPPDHEAPAAENVTSDNPTPSQQLEEEETGRSQRDSSSXXXXXXXXXXXXXXSYGAAQSAMPRNFRISLDGYTLRTDGDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGFLDERASMMGVQTQIGEVLDQMDRMSSLCVDLQHQLSLSQVQVQGQNELVENLCRRLQQ 891
M HPMTT KT NDLEQAPPATIAAQQES R PSPPA A XXXXXXXXX TS SIPPRPIPIPPDHEAPAAENVTSDNPTPSQQLEEEE GRSQRDSSS SYG+AQS+MPRNFRISLDGYTLR DGDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLK ED+PHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGFLDERASMMGVQTQIGEVLDQMDRMSSLCVDLQHQLSLSQ+QVQGQNEL+ENLCRRLQQ
Sbjct: 1 MLHPMTT-KTRNDLEQAPPATIAAQQESAMRAPSPPALAXXXXXXXXXXXXXXXXXXXX-TSQSIPPRPIPIPPDHEAPAAENVTSDNPTPSQQLEEEEMGRSQRDSSSGTGDSGSAAGVAAASYGSAQSSMPRNFRISLDGYTLRADGDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKTEDMPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGFLDERASMMGVQTQIGEVLDQMDRMSSLCVDLQHQLSLSQMQVQGQNELIENLCRRLQQ 295
BLAST of mRNA_Ecto-sp6_S_contig10.565.1 vs. uniprot
Match: A0A7R9P7P4_TIMCA ((California timema) hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9P7P4_TIMCA) HSP 1 Score: 64.7 bits (156), Expect = 8.630e-9 Identity = 32/96 (33.33%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 448 DGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGF--LDER 729
D K+ Y++ VT+ +W V RRY +F L+ ++ + + P+ LPGK+L G+++DPSF ++R L +++QL+ +P++ F LD R
Sbjct: 29 DKKFTVYKVMVTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLMTDHRLIHLPEVREFFQLDRR 123
BLAST of mRNA_Ecto-sp6_S_contig10.565.1 vs. uniprot
Match: A0A7R9F6D3_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9F6D3_9NEOP) HSP 1 Score: 64.7 bits (156), Expect = 1.730e-8 Identity = 32/96 (33.33%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 448 DGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGF--LDER 729
D K+ Y++ VT+ +W V RRY +F L+ ++ + + P+ LPGK+L G+++DPSF ++R L +++QL+ +P++ F LD R
Sbjct: 40 DKKFTVYKVMVTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLMTDHRLIHLPEVREFFQLDRR 134
BLAST of mRNA_Ecto-sp6_S_contig10.565.1 vs. uniprot
Match: A0A7R9K2T1_TIMGE (Hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9K2T1_TIMGE) HSP 1 Score: 62.4 bits (150), Expect = 1.930e-7 Identity = 27/76 (35.53%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 448 DGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLV 675
D K+ Y++ VT+ +W V RRY +F L+ ++ + + P+ LPGK+L G+++DPSF ++R L +++QL+
Sbjct: 40 DKKFTVYKVMVTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLM 114
BLAST of mRNA_Ecto-sp6_S_contig10.565.1 vs. uniprot
Match: A0A7R9CUJ7_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CUJ7_TIMCR) HSP 1 Score: 60.1 bits (144), Expect = 1.260e-6 Identity = 30/90 (33.33%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 466 YRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGF--LDER 729
Y++ VT+ +W V RRY +F L+ ++ + + P+ LPGK+L G+++DPSF ++R L +++QL+ +P++ F LD R
Sbjct: 119 YKVMVTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLMTDHRLIHLPEVREFFQLDRR 207
BLAST of mRNA_Ecto-sp6_S_contig10.565.1 vs. uniprot
Match: A0A7R9CWS3_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9CWS3_TIMPO) HSP 1 Score: 53.5 bits (127), Expect = 6.260e-5 Identity = 24/66 (36.36%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 478 VTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLV 675
VT+ +W V RRY +F L+ ++ + + P+ LPGK+L G+++DPSF ++R L +++QL+
Sbjct: 2 VTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLM 66 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.565.1 >prot_Ecto-sp6_S_contig10.565.1 ID=prot_Ecto-sp6_S_contig10.565.1|Name=mRNA_Ecto-sp6_S_contig10.565.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=297bp MFHPMTTNKTGNDLEQAPPATIAAQQESVARDPSPPASAAALGPSMSPGAback to top mRNA from alignment at Ecto-sp6_S_contig10:1542779..1547614+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.565.1 ID=mRNA_Ecto-sp6_S_contig10.565.1|Name=mRNA_Ecto-sp6_S_contig10.565.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4836bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1542779..1547614+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1542779..1547614+ >mRNA_Ecto-sp6_S_contig10.565.1 ID=mRNA_Ecto-sp6_S_contig10.565.1|Name=mRNA_Ecto-sp6_S_contig10.565.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1542779..1547614+ (Ectocarpus species6 EcLAC_371)back to top |