mRNA_Ecto-sp6_S_contig10.564.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.564.1
Unique NamemRNA_Ecto-sp6_S_contig10.564.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.564.1 vs. uniprot
Match: A0A6H5KWT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT1_9PHAE)

HSP 1 Score: 1066 bits (2757), Expect = 0.000e+0
Identity = 625/733 (85.27%), Postives = 634/733 (86.49%), Query Frame = 1 
Query:    1 MLPSTTSQAVVDFPSSGVSPSAMTAEAMAHDEDGFVDLYKGALAVTPPPSSNARSPQMQWGTALPFAGNAGDDGHIAAPAPASGSIEFGGTRANPFSPLPPSSASPTTLQTNKQSLLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSGPTKARAKGGARQPRRVKLHDXXXXXXXXEDGAPDHRVCLLAVGTKKQRLGGADGTVTXXXXXXXXX--AMDSGVSLDDVIGMLTAEINRNGREAETERVETGERAVLQVRALARSELRYGIVLLEVEGSRAAAIATARELKAANPSTPIIAVASPHAMLTPAQLLSSEGWRDFNEILPFPVSAATVRGLATRYLLAPPGVAAAAASSGMAGEPISSGPAXXXATFGQLGRHTAGSGSCCSATLVPSLPGAGGSGEVPXXXXXXXXXXXXXXXXQGTGAALSPHGVAWSVLPDAEEGVLLPSQPLLSVTGPCARRALEGLARPRAAMASPSSSSPATVEETLASLKRRVFGGSEEDRALSCGLFGEEFEMKNAEIEDSREYDFVFRHGTILVRVEEGAGGEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSNRPERAHEQRVGHERLPPWYVLLKVCLPSALGLIKEPELLQQLYSKKAAEASKR-AAPQKGRGKVGAKKSNKKAKGAPVAGDIQSREGVSSEACT 2190
            MLPSTTSQAVVDFPSSGVSPSAMTAEAMAHDEDGFVDLYKGALAVTPPPSSNARSPQMQWGTALPFAGNAGDD H AAPAP SGSIEFG +  NPFSP          LQ NKQSLLPA                              XX      P  GPTKARAKGGARQPRRVKLHD   XXXX E+GAPDHRVCLLAVGTKKQRL GADGTVT  XXXXXXX  AMDSG SLDDVIGMLTAEINRNGREAETERVETGERAVLQVRALARSELRYGIVLLEVEGSRAAAIATARELKAANPSTPIIAVA P AMLTPAQLLSSEGWRDFNEILPFPVSAATVRGLATRYLLAPPGVAAAAASSGMAGEPISSGP+   ATFGQLG+HTAGSGSCC  TLVPSLP AGGSGEVPXXXXXXXXXXXXX    GTGAALSPHGVAWS+L DAEEGVLLPSQPLLSVT PCARR       PRAAM SPSSSSP+T+EETLASLKRRVFGGSEEDRAL CGLFGEEFEMKNAEIED REYDFVFRHGTILVRVEEG  GEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLS RPERA EQR GHERLPPWYVLLKVCLPSALGLIKEPELLQQLYS+KAAE SKR AAPQKGR KVGAKKSNKKA+GAPVAG IQSREGVSSEA T
Sbjct:    1 MLPSTTSQAVVDFPSSGVSPSAMTAEAMAHDEDGFVDLYKGALAVTPPPSSNARSPQMQWGTALPFAGNAGDDDHNAAPAPDSGSIEFGSSGINPFSPPXXXXXXXXXLQANKQSLLPASSSSVAVSSVAATPTPVPPLPTARPPSAATXXPPRAAKPFPGPTKARAKGGARQPRRVKLHDDGDXXXXPEEGAPDHRVCLLAVGTKKQRLRGADGTVTVAXXXXXXXXXAMDSGASLDDVIGMLTAEINRNGREAETERVETGERAVLQVRALARSELRYGIVLLEVEGSRAAAIATARELKAANPSTPIIAVAYPRAMLTPAQLLSSEGWRDFNEILPFPVSAATVRGLATRYLLAPPGVAAAAASSGMAGEPISSGPSTAAATFGQLGQHTAGSGSCCGGTLVPSLPVAGGSGEVPXXXXXXXXXXXXX----GTGAALSPHGVAWSLLRDAEEGVLLPSQPLLSVTNPCARR-------PRAAMTSPSSSSPSTLEETLASLKRRVFGGSEEDRALPCGLFGEEFEMKNAEIED-REYDFVFRHGTILVRVEEGLNGEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSKRPERAPEQRFGHERLPPWYVLLKVCLPSALGLIKEPELLQQLYSRKAAETSKRHAAPQKGRSKVGAKKSNKKARGAPVAGGIQSREGVSSEAST 721
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.564.1 vs. uniprot
Match: D7FN90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN90_ECTSI)

HSP 1 Score: 464 bits (1193), Expect = 5.130e-156
Identity = 241/246 (97.97%), Postives = 242/246 (98.37%), Query Frame = 1 
Query: 1453 MASPSSSSPATVEETLASLKRRVFGGSEEDRALSCGLFGEEFEMKNAEIEDSREYDFVFRHGTILVRVEEGAGGEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSNRPERAHEQRVGHERLPPWYVLLKVCLPSALGLIKEPELLQQLYSKKAAEASKRAAPQKGRGKVGAKKSNKKAKGAPVAGDIQSREGVSSEACT 2190
            MASPSSSSPATVEETLASLKRRVFGGSEEDR LSCGLFGEEFEMKNAEIED REYDFVFRHGTILVRVEEG GGEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSNRPERAHEQRVGHE LPPWYVLLKVCLPSALGLIKEPELLQQLYSKKAAEASKRAAPQKGRGKVGAKK+NKKAKGAPVAGDIQSREGVSSEACT
Sbjct:    1 MASPSSSSPATVEETLASLKRRVFGGSEEDRELSCGLFGEEFEMKNAEIED-REYDFVFRHGTILVRVEEGVGGEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSNRPERAHEQRVGHEHLPPWYVLLKVCLPSALGLIKEPELLQQLYSKKAAEASKRAAPQKGRGKVGAKKTNKKAKGAPVAGDIQSREGVSSEACT 245
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.564.1 vs. uniprot
Match: D7FN91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN91_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 3.760e-109
Identity = 222/267 (83.15%), Postives = 225/267 (84.27%), Query Frame = 1 
Query:    1 MLPSTTSQAVVDFPSSGVSPSAMTAEAMAHDEDGFVDLYKGALAVTPPPSSNARSPQMQWGTALPFAGNAGDDGHIAAPAPASGSIEFGGTRANPFSPLPPSSASPTTLQTNKQSLLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSGPTKARAKGGARQPRRVKLHDXXXXXXXXEDGAPDHRVCLLAVGTKKQRLGGADGTVTXXXXXXXXXAMDSGVSLDDVIGMLTAEINRNGREAETERVETGERAVLQ 801
            MLPST SQAVVDFPSSGVSPSAMTAEAMAHDED FVDLYKGALAVTPPP SNARSPQMQWGTALPFAGNAG+D HIAAPAPASGSIEFGGTRANPFSPLP SSASPTTLQTNKQSLLPA                    XXXXXXXXXXXXX     PSSGPTKARAKGGAR+PRRVKLHD  XXXXXX  GAPDHRVCLLAVGTKKQRLG       XXXXXXXXXAMDSG SLDDVIGMLTAEINRNGREAETERV+TGERAVLQ
Sbjct:    1 MLPSTISQAVVDFPSSGVSPSAMTAEAMAHDEDSFVDLYKGALAVTPPPPSNARSPQMQWGTALPFAGNAGNDDHIAAPAPASGSIEFGGTRANPFSPLPLSSASPTTLQTNKQSLLPASRSSVAVAAVAATPTPVLPPXXXXXXXXXXXXXPRAAKPSSGPTKARAKGGARKPRRVKLHDDGXXXXXXXXGAPDHRVCLLAVGTKKQRLGXXXXXXXXXXXXXXXXAMDSGASLDDVIGMLTAEINRNGREAETERVDTGERAVLQ 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KWT1_9PHAE0.000e+085.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN90_ECTSI5.130e-15697.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FN91_ECTSI3.760e-10983.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1531974..1539714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2474
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003410.1
Cds size2193
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.564.1prot_Ecto-sp6_S_contig10.564.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1532255..1539714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348708.9068801-UTR-Ecto-sp6_S_contig10:1531973..15322541682348708.9068801-UTR-Ecto-sp6_S_contig10:1531973..1532254Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1531974..1532254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348708.9147856-CDS-Ecto-sp6_S_contig10:1532254..15323771682348708.9147856-CDS-Ecto-sp6_S_contig10:1532254..1532377Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1532255..1532377 -
1682348708.9221375-CDS-Ecto-sp6_S_contig10:1533068..15331881682348708.9221375-CDS-Ecto-sp6_S_contig10:1533068..1533188Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1533069..1533188 -
1682348708.9292486-CDS-Ecto-sp6_S_contig10:1533941..15340501682348708.9292486-CDS-Ecto-sp6_S_contig10:1533941..1534050Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1533942..1534050 -
1682348708.936279-CDS-Ecto-sp6_S_contig10:1534726..15348151682348708.936279-CDS-Ecto-sp6_S_contig10:1534726..1534815Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1534727..1534815 -
1682348708.9434066-CDS-Ecto-sp6_S_contig10:1535091..15351541682348708.9434066-CDS-Ecto-sp6_S_contig10:1535091..1535154Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1535092..1535154 -
1682348708.9509704-CDS-Ecto-sp6_S_contig10:1536555..15366371682348708.9509704-CDS-Ecto-sp6_S_contig10:1536555..1536637Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1536556..1536637 -
1682348708.958181-CDS-Ecto-sp6_S_contig10:1537062..15372511682348708.958181-CDS-Ecto-sp6_S_contig10:1537062..1537251Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1537063..1537251 -
1682348708.9654622-CDS-Ecto-sp6_S_contig10:1537812..15383311682348708.9654622-CDS-Ecto-sp6_S_contig10:1537812..1538331Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1537813..1538331 -
1682348708.9725606-CDS-Ecto-sp6_S_contig10:1538815..15397141682348708.9725606-CDS-Ecto-sp6_S_contig10:1538815..1539714Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1538816..1539714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.564.1

>prot_Ecto-sp6_S_contig10.564.1 ID=prot_Ecto-sp6_S_contig10.564.1|Name=mRNA_Ecto-sp6_S_contig10.564.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=731bp
MLPSTTSQAVVDFPSSGVSPSAMTAEAMAHDEDGFVDLYKGALAVTPPPS
SNARSPQMQWGTALPFAGNAGDDGHIAAPAPASGSIEFGGTRANPFSPLP
PSSASPTTLQTNKQSLLPASSSSVTVAAVVATPTPVLPPPTARRPAPAAA
DPPRAAKPSSGPTKARAKGGARQPRRVKLHDDGDDDDDPEDGAPDHRVCL
LAVGTKKQRLGGADGTVTVTGGGGGGGAMDSGVSLDDVIGMLTAEINRNG
REAETERVETGERAVLQVRALARSELRYGIVLLEVEGSRAAAIATARELK
AANPSTPIIAVASPHAMLTPAQLLSSEGWRDFNEILPFPVSAATVRGLAT
RYLLAPPGVAAAAASSGMAGEPISSGPAAAAATFGQLGRHTAGSGSCCSA
TLVPSLPGAGGSGEVPPPPSQQQQQQQGQHQQQGTGAALSPHGVAWSVLP
DAEEGVLLPSQPLLSVTGPCARRALEGLARPRAAMASPSSSSPATVEETL
ASLKRRVFGGSEEDRALSCGLFGEEFEMKNAEIEDSREYDFVFRHGTILV
RVEEGAGGEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKI
MMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSNRPERAHEQRVGHE
RLPPWYVLLKVCLPSALGLIKEPELLQQLYSKKAAEASKRAAPQKGRGKV
GAKKSNKKAKGAPVAGDIQSREGVSSEACT*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:1531974..1539714-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.564.1 ID=mRNA_Ecto-sp6_S_contig10.564.1|Name=mRNA_Ecto-sp6_S_contig10.564.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7741bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1531974..1539714- (Ectocarpus species6 EcLAC_371)
ATGCTGCCGTCCACGACCAGCCAAGCCGTCGTCGACTTTCCCTCCTCGGG
GGTTTCCCCGTCCGCGATGACGGCCGAAGCGATGGCACACGACGAGGACG
GCTTCGTCGACCTCTACAAGGGGGCACTCGCGGTGACCCCGCCACCGTCC
TCCAACGCGAGAAGCCCGCAGATGCAGTGGGGCACGGCTCTTCCGTTCGC
GGGAAACGCAGGAGACGACGGCCACATCGCCGCCCCCGCCCCCGCCAGCG
GCAGCATCGAGTTCGGCGGCACCCGTGCCAACCCATTCTCGCCCCTGCCC
CCGTCCTCCGCGTCGCCGACCACCCTTCAAACCAACAAACAGTCCTTGCT
TCCCGCTAGCAGCAGTAGTGTCACCGTCGCGGCCGTCGTGGCGACGCCGA
CGCCTGTGCTGCCGCCGCCGACGGCACGCCGGCCTGCGCCCGCCGCCGCC
GACCCGCCCCGCGCGGCGAAGCCTTCTTCCGGGCCGACGAAGGCTAGGGC
GAAGGGCGGCGCACGCCAACCACGACGGGTAAAGCTGCATGACGACGGCG
ACGACGACGATGACCCCGAAGACGGTGCGCCGGACCACAGGGTTTGCCTG
CTCGCCGTCGGCACGAAGAAGCAACGCCTCGGTGGCGCGGACGGTACCGT
TACCGTTACCGGCGGCGGCGGCGGCGGTGGTGCCATGGACAGCGGCGTCT
CCCTGGACGACGTGATCGGCATGCTCACGGCCGAGATCAATCGGAACGGC
CGGGAGGCGGAGACGGAGCGCGTGGAGACCGGGGAGCGCGCGGTGCTGCA
GGTCCGGGCCTTGGCGCGGTCTGAGTTGCGCTACGGGATCGTACTGCTCG
AGGTGGAAGGGTCGCGGGCGGCGGCCATAGCGACCGCTCGGGAACTGAAG
TGCGTGTGCGGGCGACGTGTTTGGTTTCTTGTAGACGCCGGTCGCTTTTG
TTTTGCTAGCTGGCCAACGGGAAAGACGGTAGTCTCTGCACGTGGGCGCG
TCGAAGATGACAACGTTTCGTCTTCCATGAAAAAAAACGTCTTTGGTATG
TCTCCCCCCTCACGGGCAGGTGTTGGTACGTGTTTTGTCCACGCGTATCT
TGCATGTGTCGTCTGTCTGGACCGGCTGCCCGCAACAAATTATGTCATCG
GGAACGTCGCAGCAACGCTGGAATGCCTGCTCTTGGTTCAAAAGTTGCAA
GTAGAAATATCACATTACGTGGAGCGCCAGGCCTTCACTGCCCTCCGCCG
GTTGGTTGCCGTTTGCAACACGCTGTTCGAGTATGGCCGATCAGTTTCGA
CCCAACGGAACGCTTGTAAACTGTAGAAAGAAGGAGCAACAATGAGTTTT
TCGTCCGATGTTCGTTACTCCCCCCCCCAACAGGGCTGCTAACCCCTCGA
CTCCCATCATAGCGGTCGCCTCTCCGCACGCAATGCTCACCCCGGCTCAG
CTTCTGTCGAGCGAGGGGTGGCGCGATTTCAACGAGATCCTTCCATTCCC
CGTCAGCGCCGCCACGGTGCGCGGCCTCGCGACGCGGTACCTCCTGGCCC
CGCCGGGGGTGGCGGCGGCGGCGGCGAGCTCGGGCATGGCGGGGGAACCT
ATCAGCTCCGGCCCTGCGGCGGCGGCGGCGACGTTTGGGCAGCTGGGCCG
GCACACCGCCGGGAGTGGGAGCTGCTGCAGCGCCACCTTGGTGCCGTCCC
TCCCTGGTGCGGGTGGATCGGGGGAGGTTCCGCCGCCGCCATCGCAGCAG
CAGCAGCAGCAGCAGGGGCAGCACCAACAGCAGGGAACTGGGGCGGCGTT
GTCGCCCCACGGCGTGGCTTGGAGTGTGCTGCCAGATGCTGAGGAAGGCG
TTCTTCTGCCGTCGCAGCCGTTGCTGAGCGTAACCGGTCCATGCGCGAGG
AGGTGAAAAAACTCTTGCTCCGCGACACCGCTACAAGTAGGGTGACGCTG
CAATCCACAGATTATAGGTCTTGTGTCACCCGCGTAATCGGCAGCGCAAA
GAACGACATGCATTTTTCTCGGAATCGACAAACCATACACAAGATCACGG
CGTGGGGCGGTATCGATAGGAAAACAGCCGAGAGCGATAGATCATGACGC
TTCACATGGCGGATTGGTTTTTCTGAATGGAAATATTTGACAGTTTCGGA
AGGTTCCACGCCCTGTGTGTTCCTCAGAAAATCCTGGCGCTTCAGCGGCG
TTTGCTACCGTATGGGTCGTGTTTCTGTGATGTCATCGCGAGTCCATGCA
CGTCCACCGGACAGGGGACAGTACTTGTGCGTTGTGTTGCTTACCATGAA
CATTTGTTCGTCGGCACTCACCCCTTCCGAGACAATGCACATGCAATTCA
TAAAAATGTTCTGAATTGTTTGGTCCTCCTATATCCATTTCGCGTCCGTC
TACTCGTTCTCACCCGAATATACCCACACCTCCACCCCCTCTCCTCACGG
GCCGCCGAACAAGGGCTCTGGAGGGGTTGGCTAGGCCCCGCGCCGCGATG
GCATCACCGTCGTCATCGTCACCCGCCACTGTTGAAGAGACTCTGGCATC
GCTGAAAAGGAGAGTTTTCGGCGGGAGCGAGGAGGACCGCGCGTTGTCCT
GCGGGCTGTTCGGGGAAGAGTTCGAGATGAAGAACGCCGAGATCGAGGAC
AGGTAGGTCTGGACTAATTTTGGAAGCTCGGTTTCTTGCAGCGCCAACCA
AGTCTTGCGGATCCTCTCACCTTGGAGTGATATTTAGCTTTCTTCGCTCG
AGGTCGCAGGGTACAAATCAACAACCAGACAGAGTGTGATTATGTGCTGG
TTGCTGTTTGTTGTCCTACAGTGTACAGGTCTCAGCACGGATGTTGGTTT
GCAAAGAAATATGGGAAAGAGGATCGGGCGGTATGTTTGTGATAAGCCAG
TCCTCCTCGCTCCTTCTGAGCTTCCACCTCGACGAGCGCTCTCCCAAGAC
AAAGCTCACGGCCGTTGGTTCTTCTGCACGCCCTGATCTAGAAGCCCGGT
GTTTCGTTGTTTGGCCTCGCTCACTCACAACCTCCTGTGTCGAAACGCTT
CGATGCTGCCTTTGTTGGCGTTTCGAGCAGGGAGTACGACTTCGTGTTCA
GGCACGGCACCATCCTGGTCAGGGTGGAGGAAGGCGCCGGCGGAGAGGTT
GTCCCGATGGTGGGCATGTTGTGTTCCACCGTACTTTCCGACTGTTTTAT
GTATCGCTTATGGAGTTTTATTTTTCTCCCCCACCGTGGTTATTTTGTAC
GGCTATGAGTGCACCCCCCGCCCCCCCCAACCAAGATTACTTGCTTCAGT
CCACTCAACGTTATGGTGCATGCCGGGATACGATTCAGCAGCCGTGAAAA
GTCGGGTAGTGTAGTTCTCTGGACTGCACGTGCTTGACCGAGAATATAGG
TTCAGAATGGCATTGCGCCACCCCGTGCTGCCGGCGTACAACAACGACGT
CGCAACTCGTAGCGAGTCGATGTATGGTAGACAGCACCCTTTGGCTTATA
CAATCGGGTCCCTCATAGCACCGGTATGTGTCCGCCACATTCACCGGCAC
TATCCCGGACACCAGGCACTGTTCATGTTCAGAGAACGAGACAAGTTGAA
TTCGAAGCTACCATCTCACGCGATTTCACCGGCAAGATACTGGGCAATGG
CACTATTCAACCGGCACTATTGAGGGACCCCCACTACACGTACAGCAGTT
TTCCAGCTCGTTGATAATTTATCGCCTACCCGATGCGGTGGGCCGTAGAC
TGGACCGTGTACCCTTGCCTCGATGTCACCGTTTGCTGGCCTAATCGCTG
ACCTCTCACCTGTGTTTATGATTGCGTGGTTGCAAGGCGCCTGCTGGGAC
GCGGTGTTTGCCGGGGTTTTGAACCCCCGGAACCCCGAACCTAGGGCCGC
ATGTCGATACTTCCAAAAGCTGTAGACAGGTCTGCAGAGTTTAATGTCGA
CTGAAACTCATTATGCCGCTTGTTTCGCCAACTGTCGTACGGTAATGCTC
CACACACAGTCAGGCAGACTATTTTTTTTTTATAGTCGACCCCCCCCGCG
CCCCAATCGAGTATCTTCCAAGAGTCGGGCAACGCCCCAATCCCGCCCAA
ATCTAGCGACGTCTATAAACCCTTGCCGTGCACACCCCCACTGCTATTTC
CAGGATCCCGACCATGGGATGTCCCAAAGGAACTTCTCCTGACAATAGAA
GGCTTCATAGGCCACGTGGCGCGAAAACACGCGGCAGGGCATTTTCGGGG
TCAAAGTCGATGTATGATTTATCTCGCTACCACAGATCACATGGTAAATC
TTGTCTCGCCGGATGGATCGTTCCTGAGTGCGGCGGGACTGGGCAGAGCC
CGGAATAGCATTGTCGGATAGTTTAGAATCGAGAACCAGCCTCATACGGC
AAATGATAACACGTGTGACTGGCGTCGTCGACAGCCCAACCCGAGTCGAA
GCAAATCGAAACTGCGCTTGAGTGTTCCCGAGGGTCCGCGTCATGGTAAC
CTCTCGCTGTGCCGTACATGTGGTTCCGTCTCGTGTCGCCGGCGGCGGGG
GCGAGTGCAGGTGTTCAGCCTGTGTGAGTACGCCACGGACCACTTTGGAG
ATCTGACCGGGCTTCCCCTTCAGGTAGAACGCCTGAGGGAACGGTTGTCA
TGCGCTATGTTCCCTAGTTGATTCGATACCCTCATTAGTTGTTTTGCGTC
GCTCAGGTGCACCCGCTCGTTGCCAAGTTTGTCGCTTTCGGAGGGATGCT
TGCCTTCGCCTTCCGAATCATCCATGGCCTTGTTCGGGACGATGCATCTC
GAATCTGTCCAAAATCTCCACGAGACACGAACTTTCCGGTTGTCCTGGCT
ATCGATCTGAATACCGCCGACCGTGGCTGCCGCCTTTTCTTCTTCGCAGT
GGCTGTTCCACGAAGATGCCACCAACAAGAAGACCGCCGCGAAGATCATG
ATGCACATCGAGCGGAGCGACTCGGACAGCATGTGTTGGTGAGTCCATCT
AGTCCACTTAATTTTTTTGTCTCACTTCACACAAGCAATCACAGCACTTG
TGCGAAATACTCCAACCCGTGGTCACACAGAAGGGTTTCCCCCTACCCAC
CCCTCCATGTCGCTATAATATACCGGTCTCCTGTGCTGGAGGAGAGCCCC
CTCCTCTCCGTTCTTCCGCTCTTTTGTTTTGTTCTTATACCCTCTATGGT
ACGATACAAACCGGTAAAATGTATCCGAGGGCCTAGGTGTGCGAGGGCAT
TCTCTCGCCGGGCACGCGGATGCTTGCTGATAGGGATCACGAGCAGTTGT
GCCCCTCTGTGAGCGCCCTCCTCCTGCGGGCTGCCGCCTGTTCCGATTTG
CGGCGCCCTCTCCGCTGTTGTTGAGTCTCTGGTTCTCGCAAGCCATTCTT
TGCAGATGTCCTGCATCCATGAGCGCATGATTCCTGTCCACACATCCGGC
TTTTTCGCATTGATCGATGAAGGAATGATGATAAATTCAATTTCTGCCTG
CCCACGGGCCAAAACGGAGAACAACCAACAGACACCGACTTCAAGAGTGT
AGATGACCTAAGTCCCGCGTTGATTGGACTCCTCGAACGATTGGCGTTGT
GACTTGCGGCCGATGTTTTGGCTCACCCTCCCCCCCCCACTCCGCCGGCA
CGCCTCTGTTGCAGCTACGTCAACCTCAAGAGCAAGGTTCGGCGGTGGAC
ATCCTCCTTTGTCTCAATCCGATCGCTGTCAAACCGCCCAGAGAGGGCAC
ATGAACAACGAGTTGGCCACGAGGTGTGAGCAAGTTGAATGGTAAATGCG
TTCGATCGTGGTAGGGCTACCGAGTTCGAAAGCGCGAACCCACAAAGGTC
GCGACTGGCTTCGGTAGTCGTGGCGTGACAGCTCGAAGTCTACGCAACGA
GGTGGCAAGGGCGCTTCGTGGCGATCTTACCGGGAGCTTTATTTTCTCAC
ACCTGTACCGTTGGTCTCCCTCTCACAAATCGTTGCATGAGGGAGAATCG
AGACAGTTGGACTCAAATATTTTTGGCGACGATGCCCCCGTTCGAGCGAC
AGGCCCCAAGTATGCTTCCCTAGCTTATGCCCTTGCATAAGAAGCTTGTT
CTATTCGCGCATGTTGTTTGATTTTGACAGGTTTGTCCCATAGTATATGA
AATTGTGTACATTCAACCTTCATACTCCCCGCAAAGAATGGTTACGAAAA
CGATACGTTCCGGGTGTTTCGCTCCCTGCGGTGTGTCCCGCTGTAGGGGC
TAGCGGCATTCCTTGCCCCCTCCCTCTCTTGCCTCGCCGGCTTCAGCGCG
ACTGCCCCCAGTCACGCTTGCGCTTCGTGGTCTCGGAAAGATGGATTCCC
CCCCCCCTGGACTAACTCCGGCCTCTTTTTCGCCTCTTCAACGCACGAGA
TTGCAGTTGGGTTTACCCGTATCTTGAGCTAGCATTACGGTTCGCGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTGCCTCCCTGC
TGTCCTCTCGCTCCCCTCTCCAACAGCGGCTGCCGCCGTGGTATGTGCTT
CTGAAGGTCTGCTTGCCGTCCGCCCTGGGGCTAATCAAGGAGCCCGAACT
CTTGCAGCAACTGTACAGCAAGAAAGCCGCGGAAGCCAGCAAGAGGGTGA
GGTCGCTTGTCACAAGAAAAGGACTCAAGACGATTGTGGATATGCCTGGA
TGATGAATTATTCTGGTCTGAGGGAAGCCAGGTCGACGATTCTGCTTGTT
TGAGAACCGATAACAATGCTTGGGTAGCATCAAGGTTCCCCCGAAATGAG
GCACCATGACGACAGAGATCAATCTTGCACACCTGCTGCCGGCTATGTTG
GGGGGTTCTTCTCTTGAAGGCGGGAACAGCCCGGGGCGCCCAAGCACCGT
CAGTTGTCGTTGAACACGCATCGAATCTCTCCGTATTCTTCGCGTATGCG
AACGCGTGTTTTTCGCGGAGGGGGGAACCAGAATGACGCCACCTCGGTGT
AGTGCACAAAATACGATATTTTTGCTTCATGTGTCTTGTTGAGTGCACGA
ACATCACAATTGGTTTCGGATTTCATGTTAAGTGTTACTGCTGCGTGTGC
GGGAGCACTTCTTGCCAAGGCCAGTCGACGCTTTATCGGTTTGGGGCACT
AGTGACAATATGGTGGGGTTTAGAGCGCAATGCCTGTTTCTGTGAAGACG
TCGACCTCGCTAGTAGGTACTCGGAGAACACACGTGATAGTTGTGTGCTT
TGGTCGGCATGATCTGACGTTCGATATACATTTTCTGCCATGAAGAATCA
CATGCACGTCCTCGCCGATACCACCTTCGGACAACAGGCCGCTCCGCAGA
AGGGCAGAGGCAAGGTCGGGGCGAAGAAGAGCAACAAAAAGGCCAAAGGG
GCACCGGTGGCTGGCGATATCCAGAGCAGGGAAGGCGTTTCGAGTGAAGC
CTGCACGTAGCCCAGTCAGGCTCCCCGAACCCGGCAAGGCTGAGATAGCG
GAAAAGCGTTTTCTGCCACCAGCAGAGCCCGAATTTTCACGTTGTACGAC
AGCAATGGCTAGGCATTTTACTAGTGTTTTTTATCAGTCACTCGTACCTC
TATTCATTCATACGACACGCGATGTTTCCGAGGCTCACACGGTCGTGGGG
CTATGTGCTGTTTCGGTTGAATCTTTTGGTGTGGAGTTGTTTTCGTTCAA
AACTGGGCATGCATGGGCGGAACTACTCTGACTCAAAAATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1531974..1539714-

>mRNA_Ecto-sp6_S_contig10.564.1 ID=mRNA_Ecto-sp6_S_contig10.564.1|Name=mRNA_Ecto-sp6_S_contig10.564.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2193bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1531974..1539714- (Ectocarpus species6 EcLAC_371)
ATGCTGCCGTCCACGACCAGCCAAGCCGTCGTCGACTTTCCCTCCTCGGG
GGTTTCCCCGTCCGCGATGACGGCCGAAGCGATGGCACACGACGAGGACG
GCTTCGTCGACCTCTACAAGGGGGCACTCGCGGTGACCCCGCCACCGTCC
TCCAACGCGAGAAGCCCGCAGATGCAGTGGGGCACGGCTCTTCCGTTCGC
GGGAAACGCAGGAGACGACGGCCACATCGCCGCCCCCGCCCCCGCCAGCG
GCAGCATCGAGTTCGGCGGCACCCGTGCCAACCCATTCTCGCCCCTGCCC
CCGTCCTCCGCGTCGCCGACCACCCTTCAAACCAACAAACAGTCCTTGCT
TCCCGCTAGCAGCAGTAGTGTCACCGTCGCGGCCGTCGTGGCGACGCCGA
CGCCTGTGCTGCCGCCGCCGACGGCACGCCGGCCTGCGCCCGCCGCCGCC
GACCCGCCCCGCGCGGCGAAGCCTTCTTCCGGGCCGACGAAGGCTAGGGC
GAAGGGCGGCGCACGCCAACCACGACGGGTAAAGCTGCATGACGACGGCG
ACGACGACGATGACCCCGAAGACGGTGCGCCGGACCACAGGGTTTGCCTG
CTCGCCGTCGGCACGAAGAAGCAACGCCTCGGTGGCGCGGACGGTACCGT
TACCGTTACCGGCGGCGGCGGCGGCGGTGGTGCCATGGACAGCGGCGTCT
CCCTGGACGACGTGATCGGCATGCTCACGGCCGAGATCAATCGGAACGGC
CGGGAGGCGGAGACGGAGCGCGTGGAGACCGGGGAGCGCGCGGTGCTGCA
GGTCCGGGCCTTGGCGCGGTCTGAGTTGCGCTACGGGATCGTACTGCTCG
AGGTGGAAGGGTCGCGGGCGGCGGCCATAGCGACCGCTCGGGAACTGAAG
GCTGCTAACCCCTCGACTCCCATCATAGCGGTCGCCTCTCCGCACGCAAT
GCTCACCCCGGCTCAGCTTCTGTCGAGCGAGGGGTGGCGCGATTTCAACG
AGATCCTTCCATTCCCCGTCAGCGCCGCCACGGTGCGCGGCCTCGCGACG
CGGTACCTCCTGGCCCCGCCGGGGGTGGCGGCGGCGGCGGCGAGCTCGGG
CATGGCGGGGGAACCTATCAGCTCCGGCCCTGCGGCGGCGGCGGCGACGT
TTGGGCAGCTGGGCCGGCACACCGCCGGGAGTGGGAGCTGCTGCAGCGCC
ACCTTGGTGCCGTCCCTCCCTGGTGCGGGTGGATCGGGGGAGGTTCCGCC
GCCGCCATCGCAGCAGCAGCAGCAGCAGCAGGGGCAGCACCAACAGCAGG
GAACTGGGGCGGCGTTGTCGCCCCACGGCGTGGCTTGGAGTGTGCTGCCA
GATGCTGAGGAAGGCGTTCTTCTGCCGTCGCAGCCGTTGCTGAGCGTAAC
CGGTCCATGCGCGAGGAGGGCTCTGGAGGGGTTGGCTAGGCCCCGCGCCG
CGATGGCATCACCGTCGTCATCGTCACCCGCCACTGTTGAAGAGACTCTG
GCATCGCTGAAAAGGAGAGTTTTCGGCGGGAGCGAGGAGGACCGCGCGTT
GTCCTGCGGGCTGTTCGGGGAAGAGTTCGAGATGAAGAACGCCGAGATCG
AGGACAGCAGGGAGTACGACTTCGTGTTCAGGCACGGCACCATCCTGGTC
AGGGTGGAGGAAGGCGCCGGCGGAGAGGTTGTCCCGATGGTGTTCAGCCT
GTGTGAGTACGCCACGGACCACTTTGGAGATCTGACCGGGCTTCCCCTTC
AGTGGCTGTTCCACGAAGATGCCACCAACAAGAAGACCGCCGCGAAGATC
ATGATGCACATCGAGCGGAGCGACTCGGACAGCATGTGTTGCTACGTCAA
CCTCAAGAGCAAGGTTCGGCGGTGGACATCCTCCTTTGTCTCAATCCGAT
CGCTGTCAAACCGCCCAGAGAGGGCACATGAACAACGAGTTGGCCACGAG
CGGCTGCCGCCGTGGTATGTGCTTCTGAAGGTCTGCTTGCCGTCCGCCCT
GGGGCTAATCAAGGAGCCCGAACTCTTGCAGCAACTGTACAGCAAGAAAG
CCGCGGAAGCCAGCAAGAGGGCCGCTCCGCAGAAGGGCAGAGGCAAGGTC
GGGGCGAAGAAGAGCAACAAAAAGGCCAAAGGGGCACCGGTGGCTGGCGA
TATCCAGAGCAGGGAAGGCGTTTCGAGTGAAGCCTGCACGTAG
back to top