mRNA_Ecto-sp6_S_contig10.561.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: D7FN87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN87_ECTSI) HSP 1 Score: 486 bits (1250), Expect = 2.910e-170 Identity = 326/348 (93.68%), Postives = 327/348 (93.97%), Query Frame = 1 Query: 1 MASLAATADKPGGGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHLG 1044 MASLAA A+KPGG XXXXXXXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXX LLQSITLAAREAEREAPPDR VESVGEGGGGEG AAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQ LLGAEHARAKLVRLPQ VRW TAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHLG Sbjct: 1 MASLAAIAEKPGG----XXXXXXXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLQSITLAAREAEREAPPDRAVESVGEGGGGEGRAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQVLLGAEHARAKLVRLPQ-----------VRWHTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHLG 333
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A6H5J5G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5G9_9PHAE) HSP 1 Score: 389 bits (999), Expect = 4.100e-132 Identity = 250/294 (85.03%), Postives = 257/294 (87.41%), Query Frame = 1 Query: 1 MASLAATADKPGGGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQAS 882 MAS+A T +KPGG XXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNA R VDLVKVREFL+TALLYADSIAIAVG XXXXXXX PLLQSITLAAREAER+APPDRGVESVGE GGGE AAGVVNVFEVTPWGKFTPALNALLGFASRDGA+LVMFQSLETTVGKDAVSGMEA+MGPADLVVGAALTGHAF+GGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQAS Sbjct: 1 MASVAVTPEKPGG---------XXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNAHRSVDLVKVREFLDTALLYADSIAIAVGTPPPSADQHGTXXXXXXXDSTP------PLLQSITLAAREAERKAPPDRGVESVGEEGGGERGAAGVVNVFEVTPWGKFTPALNALLGFASRDGADLVMFQSLETTVGKDAVSGMEAHMGPADLVVGAALTGHAFQGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQAS 279
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A835Z311_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z311_9STRA) HSP 1 Score: 202 bits (515), Expect = 2.700e-59 Identity = 140/314 (44.59%), Postives = 169/314 (53.82%), Query Frame = 1 Query: 133 LCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPA-DLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALL----------GAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041 L TRVHQN + RP+DL V F AL YAD++ IAVG L SI A+ AE+ A A G V V +VTPWG+FTPALNALL A+ GA L++FQSLET VS +EA + PA DLVVGAAL GH F GE E+TG TTPWNTLALW V +LA+LGFL V++G + GV AGVEEV AI+ LQ L RAKL+ L A+ W+ WED+ RR WH SKM+SKR+RA QM+AL + G V H+ Sbjct: 11 LVAATRVHQNQSSRPIDLRAVSAFFTGALAYADTVMIAVGTTDSAT------------------------LASIQQTAQAAEQAASR----------------APGTVLVLQVTPWGQFTPALNALLCAAASAGAPLILFQSLETAATPALVSALEAELDPAQDLVVGAALPGHDFSPGEH-EITGTTTPWNTLALWSVPQLARLGFLTVSDGAVAGVAAGVEEVAAISLLQQLRHSGGSGGGGSATRECRAKLLCLEGAT-----------WEAEWEDDARRSWHASKMASKRQRAAAQMAALCARPGRVLHI 272
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A7S2V0C8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C8_9STRA) HSP 1 Score: 176 bits (445), Expect = 3.790e-50 Identity = 101/192 (52.60%), Postives = 127/192 (66.15%), Query Frame = 1 Query: 469 VTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAW-EDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041 V PWG FTPALNALL AS +G L+ +QSLE V ++ ++A M P D++VGAAL GH F GE+VE G T PWNTLALWD A+L+ GF+ ++EGLLPGV AGVEE TA+ LQ L E + AKLVRL Q + W T W EDEGR++WHE+KM+SK R+ Q+ ALGI V+H+ Sbjct: 26 VAPWGCFTPALNALLAHASSEGFGLISYQSLEMAVCREDYEELKAQMEPGDVLVGAALPGHIFSPGESVEAGGRTCPWNTLALWDTARLSLTGFIPLSEGLLPGVSAGVEEATALTLLQHLKP-ETSGAKLVRLSQ-----------IEWNTNWGEDEGRKQWHEAKMASKASRSSSQLQALGIPPAMVKHV 205
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A7R9YER5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YER5_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.100e-40 Identity = 94/210 (44.76%), Postives = 127/210 (60.48%), Query Frame = 1 Query: 442 AAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMG--PADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGV--------PAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041 A + V V PWG+F PAL+ALLG+A+ +G E+++FQS+E + + + ++ DLVVG A+ GH F+ G V LTG TTPWNTLALW+ +LAK GFLGVAEG + V GVEEVTAI+A Q+L + ARAKL+++P + W+T ++D RR WHE KM SK RA Q+S L + VEH+ Sbjct: 123 AGSEIAVLPVQPWGQFVPALHALLGYAATEGYEMILFQSVEIETSPETLRALVDHLDLDGGDLVVGVAIQGHEFKPGTNV-LTGRTTPWNTLALWNTQELAKTGFLGVAEGWVRTVGDEGETVIAGGVEEVTAISAAQSLSPSRRARAKLLKVPG-----------ITWETQFKDAERRAWHERKMRSKLSRAQAQLSVLKLPTAYVEHI 320
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A1Z5K272_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K272_FISSO) HSP 1 Score: 141 bits (355), Expect = 6.000e-36 Identity = 93/202 (46.04%), Postives = 125/202 (61.88%), Query Frame = 1 Query: 454 VNVFEVTPWGKFTPALNALLGFA-SRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPG---VPA-GVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQT-AWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041 ++V VTPWG+F ALNAL+ +A R A+ ++F S ET V +D + + A++ P LVVGA L GH RG L+G T+PWNTLA+WD+ KL+ GF V++GLL P+ GVEEV AIA LQ LLG E+A+AKLV L + V WQ +++D RR+W E KM SK RA +Q+ +G+ G V HL Sbjct: 98 IHVLPVTPWGEFVSALNALVIYARKRLQADRILFLSAETVVDRDGIQELLAHLTPDTLVVGARLPGHVVRGECVTLLSGTTSPWNTLAVWDLHKLSLTGFQLVSDGLLTDDKEEPSFGVEEVVAIALLQKLLGTENAKAKLVTL-----------KHVDWQVDSFDDPERRKWQEEKMKSKEIRAQRQLDLIGLA-GKVHHL 287
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A432R2Q5_9PROT (Uncharacterized protein n=1 Tax=Hydrogenimonas sp. TaxID=2231112 RepID=A0A432R2Q5_9PROT) HSP 1 Score: 138 bits (347), Expect = 3.240e-35 Identity = 89/195 (45.64%), Postives = 115/195 (58.97%), Query Frame = 1 Query: 454 VNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGG--ETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTV 1032 V +F + PW +T LN ++ A GAE ++FQS+E TV + V +E ++ LVVGA L H G E V LTG TTPWNTLALW++ KL GFL V+ G LPG+P GVEEV I+ LQ L E AK+V L + V WQT W + R +H +KM+SK ERA+KQ+ ALGI+ G V Sbjct: 59 VKLFHIHPWIGYTQPLNMIIEKALSVGAEKILFQSIEVTVSPEDVKRLEEHLDSKTLVVGAKL--HEMHGHVHEKVALTGWTTPWNTLALWNLQKLGLTGFLTVSSGNLPGIPGGVEEVVTISLLQTL-HPEVMDAKMVEL-----------KSVTWQTQWSCKEREAYHAAKMASKNERAEKQLKALGIEPGIV 239
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: F0XX88_AURAN (TLC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX88_AURAN) HSP 1 Score: 140 bits (354), Expect = 3.550e-33 Identity = 121/303 (39.93%), Postives = 147/303 (48.51%), Query Frame = 1 Query: 145 TRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPAD-LVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKG---TVEHL 1041 TR+H +A RP DL KVR F++ D +AIAVG P ++ TL A E A GV + G AA V+V V PWG F PALNAL A+R G ++F S+E + A + AD LV GAAL GH F GE LTGVTTPWNTLALW V LA LGF V EGL G GVEEV+AI AL + A+ ARA LV +P V W T ++DE R WH KM+SK R ++ L + G TV H+ Sbjct: 16 TRLHVGDASRPPDLSKVRAFVDRVAPAVDRVAIAVG---------------------------VPGVEERTLEAL-GELAA----GVRAACAG------AAAPVDVVPVEPWGNFLPALNALTAHAARRGYGFILFASVEAAADPATARRLRAELDGADALVAGAALPGHDFSPGER-PLTGVTTPWNTLALWRVPSLALLGFPLVGEGLHAGAAGGVEEVSAIHALAKVHPAK-ARALLVAVPG-----------VAWATDFDDEKRAAWHAKKMASKESRPAAHLALLAAEAGPPTTVLHV 267
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A2R5GIM4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIM4_9STRA) HSP 1 Score: 135 bits (341), Expect = 8.450e-33 Identity = 117/308 (37.99%), Postives = 155/308 (50.32%), Query Frame = 1 Query: 133 LCVCTRVHQNNADRP-VDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPAD-LVVGAALTG-HAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLL-PGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWE-DEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041 L V TR+H A + VD+ + FL AL AD++ IAVG ++++ AA+ + R+ GG + V+V V+PWGKF PALNAL FA+ G + + FQSLE V D + + A + D LV GAA H F G V L G T+PWNTLA+W V KLA GF VAEGL G+ AGVEEV+ I+ LQ ++ + A+AKL L R R W+T ++ DE RR WH KM SK +R Q+ ALGI G V+H+ Sbjct: 149 LVVATRLHFAEATKEDVDVKVLGGFLRCALAIADTVVIAVGASPGTVDK----------------------IRALVNAAQTSARQQHQ----------GGKQ------VHVLPVSPWGKFVPALNALTSFAANHGFKYICFQSLEVDVPPDVIRALVAQLQLGDTLVAGAAFPNDHLFSSGWHV-LNGRTSPWNTLAVWAVGKLALTGFSLVAEGLPHEGISAGVEEVSTISILQRIMPRQ-AKAKL-------LLHRALLRADTWRTDFQGDEARRDWHRKKMQSKIDRPAAQLDALGIDPGIVQHI 409
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A1Z5KL79_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL79_FISSO) HSP 1 Score: 130 bits (328), Expect = 5.520e-32 Identity = 89/202 (44.06%), Postives = 121/202 (59.90%), Query Frame = 1 Query: 454 VNVFEVTPWGKFTPALNALLGFA-SRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPG---VPA-GVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQT-AWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041 ++V VTPWG+F ALNAL+ +A R A+ ++F S ET + + + +++ P LVVG L GHA RG L+G T+PWNTLA+W++ KL+ GF V++GLL P+ GVEEV AIA LQ LLG E+A+AKLV L + V WQ ++ D RR+W E KM SK RA +Q+ G+ G V HL Sbjct: 101 IHVLPVTPWGEFVSALNALVIYARKRLQADRILFLSAETVADHNDIQELLSHLTPDTLVVGGRLPGHAVRGECVTLLSGTTSPWNTLAVWNLHKLSLTGFQLVSDGLLTDDKEEPSFGVEEVVAIALLQKLLGTENAKAKLVSL-----------KHVDWQVDSFNDPERRKWQEEKMKSKEIRAQRQLDLTGLA-GEVHHL 290 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.561.1 >prot_Ecto-sp6_S_contig10.561.1 ID=prot_Ecto-sp6_S_contig10.561.1|Name=mRNA_Ecto-sp6_S_contig10.561.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=349bp MASLAATADKPGGGKGGQDGEQQTRQQQQQQQQQQQQQQRRRRRLCVCTRback to top mRNA from alignment at Ecto-sp6_S_contig10:1479235..1482952- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.561.1 ID=mRNA_Ecto-sp6_S_contig10.561.1|Name=mRNA_Ecto-sp6_S_contig10.561.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3718bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1479235..1482952- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1479235..1482952- >mRNA_Ecto-sp6_S_contig10.561.1 ID=mRNA_Ecto-sp6_S_contig10.561.1|Name=mRNA_Ecto-sp6_S_contig10.561.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1047bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1479235..1482952- (Ectocarpus species6 EcLAC_371)back to top |