mRNA_Ecto-sp6_S_contig10.553.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI) HSP 1 Score: 761 bits (1964), Expect = 9.460e-273 Identity = 418/433 (96.54%), Postives = 422/433 (97.46%), Query Frame = 2 Query: 293 IAPHWDARTXXXXXXXXXXXXXXXXXXRAACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFIPIRTAPAPQTTGTSGGVGENRAAGTFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPRQGIKYACVDGRDPRCNYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKVGERFALDLRWLNVGMVEVLL 1591 IAPHWDARTXXXXXXXXXXXXXXXXX R ACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFIPIRT+PAPQTTGTSGGV ENR AGTFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKP QGIKYACVDGR+PR NYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRI STSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRK+CR VKNPQ SAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFS EEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGL+NNRKVVGGWAHVKYDDRDGSK FQCKVGERFALDLRWLNVGMVEVLL Sbjct: 95 IAPHWDARTXXXXXXXXXXXXXXXXXSRVACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFIPIRTSPAPQTTGTSGGVRENRGAGTFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRNPRWNYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCKVGERFALDLRWLNVGMVEVLL 527
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE) HSP 1 Score: 345 bits (884), Expect = 3.000e-108 Identity = 183/283 (64.66%), Postives = 209/283 (73.85%), Query Frame = 2 Query: 641 MSSSVSTGGRRKGQLREQAKSCHGCRTNKPRQGIKYACVDGRDPRCNYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVK 1489 MSSSVSTGGRRKGQL E+A++CH CRT PRQGIK AC D C YWLC+ C + WTE SG DGF CCLH G WCPC +R RVR GPV L+RS AK+R V TS+FEFPA + P +T A TT SATPT G G TYSVCTSV L RVAVIK G++++CSR +C +ATG TD LPA C HAEVVL+AE SS PMP ADP+FS EEFR ALTT VP G F+E TTRAMH RADQAA++GVPVLVGLGST+YFGI DG EN+R V+GG +K Sbjct: 1 MSSSVSTGGRRKGQLTEEARTCHECRTKDPRQGIKNACGDSA---CCYWLCQKCLERWTEQSGRDGFQCCLHYGSLWCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC----------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTT-VPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIGGLYTIK 269
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 333 bits (854), Expect = 5.510e-104 Identity = 191/368 (51.90%), Postives = 242/368 (65.76%), Query Frame = 2 Query: 446 PGANQPRSPLAMPMFIPIRTAPAPQTTGTSGGVGENRAAG-TFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPRQGIKYACV---DGRDPR-CNYWLCKSCFKEWTEASGVD-GFLCCLHRGKQWCPCNSRKRVRRGP-VPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCK 1528 P QPR LAMP +P+ PQTT +SGGVG RAA T H +L + + +S+ Q G S+S STGGRRKGQL +QA +CHGCR NKP +++AC +G + R CNYW+C+ C W +ASG GF CCLH G++WCPC R +R V ++RS LA++R ST ++EFP T + T A T S TP G G TYSVCTS RVAVIK GD F+CSR +CR ++ S+AATG T SALP+ C HAEVV++AER+SMPMP AD L S +F+ AL VPAG F+ T +M ARADQAA++G+P+LV +G+TKYF + DG + NR V+G W HVKYD R GSK FQCK Sbjct: 176 PRRAQPRPALAMPQLLPV-----PQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEG--LSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDK-VPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCK 533
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 327 bits (839), Expect = 1.760e-100 Identity = 189/371 (50.94%), Postives = 242/371 (65.23%), Query Frame = 2 Query: 446 PGANQPRSPLAMPMFIPIRTAPAPQTTGTSGGVGENRAAG-TFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPRQGIKYACV---DGRDPR-CNYWLCKSCFKEWTEASGVD-GFLCCLHRGKQWCPCNSRKRVRRGP-VPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKVGE 1537 P QPR LAMP +P+ PQTT +SGGVG RAA T H +L + + +S+ Q G S+S STGGRRKGQL +QA +CHGCR NKP +++AC +G + R CNYW+ + C W +ASG GF CCLH G++WCPC R +R V ++RS LA++R ST ++EFP T + T A T S TP G G TYSVCTS G RVAVIK G F+CSR +CR ++ S+AATG T SALP+ C HAEVV++AE++SMPMP AD L S +F AL VPAG F++ T +M ARADQAA++G+P+LV +G+TKYF + DG + NR V+G W HVKYD R GSK FQCK + Sbjct: 92 PRRAQPRPALAMPQLLPV-----PQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEG--LSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDK-VPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCKASD 452
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE) HSP 1 Score: 268 bits (684), Expect = 3.760e-77 Identity = 144/209 (68.90%), Postives = 161/209 (77.03%), Query Frame = 2 Query: 905 GPVPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKV 1531 GPVP L+RS AK+R V S+FEFPAR+ P +T A TT SATPT G G T+SVCTSV L RVAVIK G++++CSR CR V N Q SAAA G T S LPA C HAEVVL+AERSS PMP ADPLFS EFR ALTT VP G F++ TTRAMH RADQAA+ GVPVLVGLGST+ F I DG ENNR V+G WAHVKYDD+ GSK FQCKV Sbjct: 575 GPVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTT-VPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 782
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 205 bits (521), Expect = 7.870e-59 Identity = 117/257 (45.53%), Postives = 162/257 (63.04%), Query Frame = 2 Query: 806 KEWTEASG-VDGFLCCLHRGKQWCPCNSRKR-VRRGPVPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLF-SPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKVGERFALDLRWLN 1567 ++W +S + F+CC+H K+ CPC RK+ R+GP L+RS A++R V TS+FE P+ T+ T A +TP+ PT G TYS CTSVG RV+V+++ ++CSR C+ ++ A AAA G T+ L C HA+VV+QA+ SS+PM A L S EEF AL AVP G F++ T +A+ AR +A E G+PVLV LG TK+F + DG NR +VGGWAHVK ++ G +CKVG+R +L L N Sbjct: 2 EKWLRSSAQLSHFMCCVHFEKEPCPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPS-TQTTPTTADSTPTPAPTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALD-AVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCKVGQRLSLILGLCN 256
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.730e-46 Identity = 89/121 (73.55%), Postives = 96/121 (79.34%), Query Frame = 2 Query: 1169 AATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKV 1531 AATG T S LPA C EVVL+ ERSS PMP ADPLFS EFR ALTT VP G F+E TTRAMH RADQAA++GVPVLVGLGST+ FGI DG ENNR V+G WAHVKYDD+ GSK FQCKV Sbjct: 10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTT-VPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 129
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 102 bits (255), Expect = 5.610e-21 Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 2 Query: 1250 MPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCK 1528 MPMP AD L S +F+ AL VPAG F+ T +M ARADQAA++G+P+LV +G+TKYF + DG + NR V+G W HVKYD R GSK FQCK Sbjct: 1 MPMPKADALLSAGDFKSALDK-VPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCK 91
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KNC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC9_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 2.330e-9 Identity = 63/128 (49.22%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 110 DSMQWWSQLVWGFNGNGAAATGAGGLSAGLFGSSSVGLGTGVGXXXXXXXXXXXXXXXAASIAPHWDARTXXXXXXXXXXXXXXXXXXRAACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFI 493 DSMQW S WG +GAAA GGL G+FGS+ +GL TG G AASIAP XXXXXXXXXXXXXXXX R CG A R GANQPRSPLAMP Sbjct: 29 DSMQWQSPTDWGPKRDGAAAASTGGLGTGVFGSNGMGLRTGTGRSVMGGAPASPANVSAASIAPRQGXXXXXXXXXXXXXXXXXXXLSRGTCGTTIALVSPTTVTAAGMATRTGANQPRSPLAMPKLF 156
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KC70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC70_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 2.970e-7 Identity = 83/154 (53.90%), Postives = 89/154 (57.79%), Query Frame = 2 Query: 92 KGGGGRDSMQWWSQLVWGFNGNGAAATGAGGLSAGLFGSSSVGLGTG------------VGXXXXXXXXXXXXXXXAASIAPHWDARTXXXXXXXXXXXXXXXXXXRAACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFIPIRTAPAP 517 +G GGRDSMQW S WG N +GAAA G GGLS G+FGS+ G AASIAP XXXXXXXXXXXXXXXX +CG AXXXXXXXXXXXXXX NQPRSPLA+P FIPI TA AP Sbjct: 54 EGRGGRDSMQWQSPTDWGPNRDGAAAAGTGGLSTGVFGSNGTXXXXXXXXXXXXXXXXXTGRSVMGGAPVSRANVSAASIAPR-----QGXXXXXXXXXXXXXXXXTTSCGTMIAXXXXXXXXXXXXXXXXXXNQPRSPLALPKFIPIGTASAP 202 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.553.1 >prot_Ecto-sp6_S_contig10.553.1 ID=prot_Ecto-sp6_S_contig10.553.1|Name=mRNA_Ecto-sp6_S_contig10.553.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=493bp MQWWSQLVWGFNGNGAAATGAGGLSAGLFGSSSVGLGTGVGGSTMGGAPVback to top mRNA from alignment at Ecto-sp6_S_contig10:1392737..1396416+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.553.1 ID=mRNA_Ecto-sp6_S_contig10.553.1|Name=mRNA_Ecto-sp6_S_contig10.553.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3680bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1392737..1396416+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1392737..1396416+ >mRNA_Ecto-sp6_S_contig10.553.1 ID=mRNA_Ecto-sp6_S_contig10.553.1|Name=mRNA_Ecto-sp6_S_contig10.553.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1479bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1392737..1396416+ (Ectocarpus species6 EcLAC_371)back to top |