mRNA_Ecto-sp6_S_contig10.545.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: A0A6H5KZP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP2_9PHAE) HSP 1 Score: 727 bits (1876), Expect = 7.960e-256 Identity = 352/405 (86.91%), Postives = 370/405 (91.36%), Query Frame = 1
Query: 10 KQMNVSVQTPDGKTLQLVISTNDTTTDVKKKIQDSEGIIPFDQQRLLCTNKTMDDLRTVSEYKIKEGDTLHLIQRVSGGGWACPPSLGKDVIFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHGGMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ 1224
KQMNV VQTPDGKTLQLVISTND+TTDVKKKIQ SEGIIP D+QRLL TN+ MDDL TVSEYKIKEGDTLHLIQRVSGGGWA PPS G+ VIFVKTLTGKT++LVVGSYNTIAD+KQM+QD E IPPDQQRL+F G QLEDGL S+YNI+GNSTLHL+LRLRGGGFAAPP+AVGAKF DVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTN CDAHG MVILNHG RDFDLIRPGRDPKRCPMCN EVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRF+ GEV+WDRLLIQ RPLLKLEQRVPSAPPAD+RV+RPNTTA +ATSTVA VIDHTWGRC SAFGAT ASDETVLDCGHRFHTRCL GWEQGSMIVCPICREES PLPQ
Sbjct: 181 KQMNVFVQTPDGKTLQLVISTNDSTTDVKKKIQHSEGIIPLDRQRLLYTNQMMDDLLTVSEYKIKEGDTLHLIQRVSGGGWASPPSCGEYVIFVKTLTGKTVKLVVGSYNTIADIKQMMQDMEGIPPDQQRLIFAGVQLEDGLTISFYNIQGNSTLHLVLRLRGGGFAAPPIAVGAKFVDVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNSDCDAHGRMVILNHGLRDFDLIRPGRDPKRCPMCNFEVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFDGRGEVEWDRLLIQARPLLKLEQRVPSAPPADERVERPNTTAISATSTVADVIDHTWGRCXXXXXXSAFGATSASDETVLDCGHRFHTRCLTGWEQGSMIVCPICREESWPLPQ 585
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: D7G3U0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U0_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 1.400e-136 Identity = 188/202 (93.07%), Postives = 191/202 (94.55%), Query Frame = 1
Query: 619 PGLCLEGRCTNHHCDAHGGMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ 1224
P LCLEGRCTN CDAHG MVILNH FRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPAD+R++RPNTTANTATSTVAVVIDHTW RCT SAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ
Sbjct: 18 PRLCLEGRCTNRQCDAHGRMVILNHAFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADERMERPNTTANTATSTVAVVIDHTWSRCTXXXXXSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ 219
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: A0A225VQY5_9STRA (Ubiquitin family protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQY5_9STRA) HSP 1 Score: 226 bits (575), Expect = 7.520e-64 Identity = 128/323 (39.63%), Postives = 177/323 (54.80%), Query Frame = 1
Query: 259 PPSLGKDVIFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHGGMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEA-GDSYHRF---EEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDETVLDCGHRFHTRCLAGWEQ-----GSMIVCPICR 1200
P ++ I++KTLTGKTL++ S ++I ++KQ IQD++ PPDQQRL+F GK LEDG Y I S++ +LRLRGGG P ++ FADVSD+S L EH FS +AP+WR GL +EGRC N C A G M+I + F F+L+R R CPMC +V P TC F DC W++ G ++ + + WK+A G+ YHRF E+ G V+WD LLI V+P + A PA +V + + + T+ C C + T A + C H FHT C+ W Q S+ CP+CR
Sbjct: 67 PLNMAAAFIYIKTLTGKTLKIHCTSTDSIDNVKQKIQDQDGTPPDQQRLIFAGKHLEDGRTLGDYGIFHGSSVCQVLRLRGGG--GPLTSM--YFADVSDNSILREHTFSTNAPQWRSCGKGLNIEGRCENRGCPAFGKMIIYPNRFNPFNLMRGDR--AHCPMCGDDVKPLTCGFYDCVWKFDGIRSSDGFSISSPWKDASGEKYHRFDADEKHGSVEWDSLLIMVKPRGEAASAKIIASPAIHQVNASTSDSEQESETI-------------CPICWSIAETVAGETITTHCEHTFHTSCIQEWAQWCSRHDSLPSCPVCR 370
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: A0A5J4WRA2_9EUKA (Putative ring and ubiquitin domain containing protein (Fragment) n=2 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WRA2_9EUKA) HSP 1 Score: 223 bits (568), Expect = 9.120e-62 Identity = 147/398 (36.93%), Postives = 210/398 (52.76%), Query Frame = 1
Query: 16 MNVSVQTPDGKTLQLVISTNDTTTDVKKKIQDSEGIIPFDQQRLLCTNKTMDDLRTVSEYKIKEGDTLHLIQRVSGGGWACPPSLGKDVIFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHGGMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEE--GGEVQWDRLLIQVRPLLKLEQRVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICRE 1203
M + ++T KTL L ++++D K+ IQ GI ++QRL+ K + D + + + I+ G TL L+QR+ GG + I++KTLT KT+ L V S + I +KQ I DKE IP +QQ+L+F GK+LED L YNI+ +STLHLI RL GGG F DV + L + +S AP WR+A GLC+EG C N C+A G MVI + GF DFDL CPMC+ P AF +C +R +KA + WK+AGD Y+ ++E G V + RL+I + L + D + K +A T TV+ V G C + D + +G P V++CGH FH C+A W++ + CPIC +
Sbjct: 94 MQIFIKTLQNKTLTLNVNSDDQIISAKQLIQGISGI-SVNEQRLIFAGKELTDDQKLCDCNIQSGKTLLLLQRLIVGGKV------EMQIYIKTLTQKTVTLQVRSDDQIISVKQQIVDKEHIPVEQQKLIFAGKELEDQLTLRDYNIQRDSTLHLIARLTGGG-------ASMSFVDVERTDALVQKKWSTSAPDWRLASKGLCIEGICENEGCEAKGQMVIFSAGFTDFDLEL---SVANCPMCHNPFKPIKPAFNNCMYRIDFQKANGAVTKI-PWKKAGDEYNTYDEKQAGIVDYTRLIIHTKVLAAGRENT------DSKGK----SAELETVTVSKVC----GICHKMLDVT-YGRDPT---VVMNCGHSFHGGCVASWKERG-LDCPICED 454
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: S4W648_9VIRU (Ubiquitin n=1 Tax=Pandoravirus salinus TaxID=1349410 RepID=S4W648_9VIRU) HSP 1 Score: 226 bits (576), Expect = 2.160e-61 Identity = 130/359 (36.21%), Postives = 188/359 (52.37%), Query Frame = 1
Query: 145 LLCTNKTMDDLRTVSEYKIKEGDTLHLIQRVSGGGWACPPSLGKDVIFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHGGMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRF--EEGGEVQWDRLLIQVRPLLKLEQ---RVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREE 1206
L +T+D+ +T E+ I+ G L ++ + PS +FV+TLTGK + + N+I ++K +I DKE +PPDQQRL++ G+Q+EDG + Y I +++HL+LRLRGGG PP + A F D+ ++ + +S AP WR+ +PGLC+EGRC N C A+G MVI+N GF FDL+ D CP C++ V P TCAF +C W++ G K G++ G W A D+YH F +E G V+W RLLI+ R + K+ + P P D C C + + VLDCGH FH+ C+ W S CP CR +
Sbjct: 308 LALNGETLDEDKTWVEHGIEAGTWLSIVPK---------PSRSFQ-LFVQTLTGKVITIEAAPANSIEEIKCIIHDKEGLPPDQQRLLYAGQQMEDGRRLADYAIRAEASMHLVLRLRGGG-GGPPAS--ATFVDMENTGAMQCRQWSKSAPDWRIVKPGLCIEGRCKNVGCAAYGRMVIVNKGFDTFDLLLDA-DTCACPECDKHVKPKTCAFNNCWWKWNGIKEGDSRKYAGKWTLADDNYHCFAEDEAGSVEWTRLLIRARSIPKVAKSGGNEPIGKPFDMF----------------------------CCICIS-SINSSGVHKVLDCGHAFHSPCIDAWVARSP-TCPHCRHK 622
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: A0A5J4VNX4_9EUKA (Putative ring and ubiquitin domain containing protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VNX4_9EUKA) HSP 1 Score: 214 bits (544), Expect = 3.640e-57 Identity = 145/380 (38.16%), Postives = 195/380 (51.32%), Query Frame = 1
Query: 103 IQDSEGIIPFDQQRLLCTNKTMDDLRTVSEYKIKEGDTLHLIQRVSGGGWACPPSLGKDV-IFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHG-GMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGM--WKEAGDSYHRFEEG--GEVQWDRLLIQVRPLLKL-EQRVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDET-----VLDCGHRFHTRCLAGWEQGSMIVCPICREE 1206
I++ EG+ P DQ RL + RT+ +Y ++E DTL L + LG + IF+KTLTGKT+ L V + NTI ++K +IQDKE IPP+QQRL+F GKQLEDG + Y I +TLHL+LRLRGGG A F DV S L + +S AP+WR G+ +EGRC N C AH GMVI N GF DFDL+R + CPMC + F +C WR RK TN ++ WK+AGD Y ++E G + RL++ + L EQ + S K +K T +V G C C + +DE V+ C H FH C+ W+ S + CP C+E+
Sbjct: 262 IKEKEGLSP-DQYRLFSEYSKIRQDRTIQDYGLEELDTLELYK------------LGISMKIFIKTLTGKTIALQVQNDNTIEEIKSLIQDKEGIPPEQQRLIFAGKQLEDGYLLADYKILKEATLHLVLRLRGGGEAM-------NFVDVERSDALIQRQWSKTAPQWRCVSRGMAIEGRCDNSSCQAHNRGMVIFNVGFSDFDLLR---NESHCPMCYSRIKGIKPGFNNCIWRIDFRK---TNGIISRLKWKKAGDEYTTYDEAQAGTADFTRLIMHAKQLSDTREQTIVSE---GKEMK-----------TTFIV----GGSCGLCHE-------DKNDERDKNVIVMKCSHNFHKVCIKIWKD-SGLKCPHCKED 589
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: A0A6A3GVD8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GVD8_9STRA) HSP 1 Score: 205 bits (522), Expect = 8.320e-56 Identity = 121/320 (37.81%), Postives = 165/320 (51.56%), Query Frame = 1
Query: 271 GKDVIFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHGGMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDS-YHRF---EEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDETVLDCGHRFHTRCLAGWEQ-----GSMIVCPICRE 1203
G V+ +K+LTGK ++I ++K IQDK IPPDQQRL+ G QL+DG S Y I+ S L + LRLRGGG PP V F DVSD+S LTE + S+ AP WRV + GL +EG C N C+A G MVI +GF F+L+ G CP C P TC F C W+++G ++ + + W+ AG+S YHRF E G V+W+ LLI V+ R +TA +T +I C+ C S FG+T + CGH FH C+ W + ++ CP+CR+
Sbjct: 116 GDLVLTIKSLTGKIAIFCAMPSDSIDNVKLRIQDKWGIPPDQQRLICAGVQLQDGRALSDYKIKTGSELLVFLRLRGGGGPRPPRKV---FVDVSDNSNLTEQSLSNEAPDWRVCDEGLNIEGECENRECEAFGQMVIYQYGFDSFNLM--GDRDVECPKCYETFTPITCGFYKCVWKFEGVRSSDGYFISSPWQNAGESKYHRFDSDENSGSVEWNSLLIVVK-------------------SRRESTAVKIPATTRSMIVRKDNVCSICW--SRFGSTAKRTMSTAKCGHTFHRECINKWSEWCSSHDALPSCPLCRQ 409
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.260e-54 Identity = 125/317 (39.43%), Postives = 165/317 (52.05%), Query Frame = 1
Query: 280 VIFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHGGMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWK-EAGDSYHRF---EEGGEVQWDRLLIQVRPLLKL--EQRVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDETVLDCGHRFHTRCLAGWE-----QGSMIVCPIC 1197
+I++KTLTGKT + + NTI ++K IQ++E IPPDQQR++F GKQLEDG S YNI+ STLHL+LRLRGG + P FADVSD S EH FS AP WR+ GL +EGRC N C A+ +VI GF F+L + G CP C +V P TC F DC W+++G KA W+ +G+ Y RF E G ++W+ LLI V+PL + + V SA A H+ C C G+ S+ CGH FH C+ W Q ++ CP+C
Sbjct: 103 MIYIKTLTGKTTHVNCHAANTIEEIKYDIQEQEGIPPDQQRIIFAGKQLEDGRKLSDYNIQYGSTLHLVLRLRGG-YVEPRC-----FADVSDGSISVEHEFSRTAPEWRICRKGLNIEGRCMNRTCIAYHELVIHPAGFEMFNLRKDG--DVTCPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFDADETSGSIEWESLLILVKPLKEAVAAELVESAQEARL---------------------HSDLVCAVCWTEILSGSGAGSE-----CGHLFHCGCIENWSKWSEGQKTLTKCPVC 385
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: A0A815UV84_9BILA (Hypothetical protein n=6 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A815UV84_9BILA) HSP 1 Score: 194 bits (492), Expect = 7.620e-54 Identity = 99/221 (44.80%), Postives = 134/221 (60.63%), Query Frame = 1
Query: 283 IFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHGGMVILNHGFRDFD-LIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETN----VLVGMWKEAGDSYHRFEE--GGEVQWDRLLIQ 924
+F+KT T KTL + +TI ++K IQ KE IPPDQQR++F GKQLEDG + YNI+ TLH+++RLRGG +G F D+S+ SGL +S AP+WR A PGLCLEG+CTN +C A+ VI+N F+ FD L+ + +CP+C V P+TC F C W +KG K G G W EA ++YH F+E G V W +L+I+
Sbjct: 3 VFIKTHTCKTLTIECECSDTIENLKYKIQGKEGIPPDQQRIIFGGKQLEDGRTLADYNIQKEFTLHMVIRLRGGD-------MGVDFVDLSNGSGLKRLNWSTSAPKWRKAGPGLCLEGQCTNRNCKAYSQAVIMNIRFKKFDMLLDVNQTTCQCPICKEYVKPNTCGFNRCWWCWKGIKEGGAGEPPKACSGNWTEADNAYHYFDEKISGSVTWRQLIIE 216
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Match: L8HGQ1_ACACA (Ubiquitin domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGQ1_ACACA) HSP 1 Score: 204 bits (518), Expect = 2.380e-53 Identity = 130/370 (35.14%), Postives = 183/370 (49.46%), Query Frame = 1
Query: 142 RLLCTNKTMDDLRTVSEYKIKEGDTLHLIQRVSGGGWACPPSLGKDVIFVKTLTGKTLELVVGSYNTIADMKQMIQDKESIPPDQQRLVFDGKQLEDGLPFSYYNIEGNSTLHLILRLRGGGFAAPPVAVGAKFADVSDSSGLTEHAFSDHAPRWRVAEPGLCLEGRCTNHHCDAHGGMVILNHGFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRY----KGRKAGETNVLVGMW--------KEAGDSYHRFEE--GGEVQWDRLLIQVRPLLKLEQRVPSAPPADKRVKRPNTTANTATSTVAVVIDHTWGRCTRCTDCSAFGATPASDET-VLDCGHRFHTRCLAGWEQGSMIVCPICREE 1206
R+ + +D+ +T +EY +++G + L+ R G W IF KTLTGKT+ L G + I ++K +++ KE IP DQQRL+F GKQLEDG Y I+ STL L+LRLRGGG A G+ F D+S+++ L +S AP+WRVA PGL +EG CTN C+A VI+N FDL+ CP C V P+TCAF +C W++ KG +AG+ + + +W ++A ++YHRF E G V+W RLLI + + + E P + C A++E L CGH FH CL W S CP CR +
Sbjct: 295 RVALGGELLDESKTWAEYALEQGTWISLVPRP--GVWF--------QIFCKTLTGKTITLEAGPAHPITEVKVLVEAKEGIPADQQRLLFAGKQLEDGTCLGDYAIDRESTLQLVLRLRGGGLTA-----GSLFVDMSNTNALERRQWSSKAPQWRVAMPGLSVEGVCTNRECEAFDRSVIINKHHGTFDLLLDAHTC-HCPSCGSYVEPATCAFNNCWWKWSGIKKGARAGQPPLHM-VWLHLSTNNREQADNAYHRFSEDKAGTVEWLRLLIHTKRIQECEDSAVPRKPFEMFC------------------------------CICICDIKATEEVKTLACGHAFHPPCLDEWTARSP-TCPYCRRD 616 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.545.1 >prot_Ecto-sp6_S_contig10.545.1 ID=prot_Ecto-sp6_S_contig10.545.1|Name=mRNA_Ecto-sp6_S_contig10.545.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=404bp MNVSVQTPDGKTLQLVISTNDTTTDVKKKIQDSEGIIPFDQQRLLCTNKTback to top mRNA from alignment at Ecto-sp6_S_contig10:1297573..1299653+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.545.1 ID=mRNA_Ecto-sp6_S_contig10.545.1|Name=mRNA_Ecto-sp6_S_contig10.545.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2081bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1297573..1299653+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1297573..1299653+ >mRNA_Ecto-sp6_S_contig10.545.1 ID=mRNA_Ecto-sp6_S_contig10.545.1|Name=mRNA_Ecto-sp6_S_contig10.545.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1297573..1299653+ (Ectocarpus species6 EcLAC_371)back to top |