mRNA_Ecto-sp6_S_contig10.540.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.540.1
Unique NamemRNA_Ecto-sp6_S_contig10.540.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.540.1 vs. uniprot
Match: A0A6H5LN99_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN99_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 2.970e-74
Identity = 138/171 (80.70%), Postives = 143/171 (83.63%), Query Frame = 1 
Query:   19 GDDSALACLWRVWTPCRKKCKQDLPKAEGCPGKHEIRSCHTGDRCTFANEGIYADLTFALDFGFSPAAGGTPDEGDNAGAXXXXXXAVIQDQWRSRVGDALASAVASLLPESCGVLPGDVAISARHADSAXXXXXXXXXXXXXXXXXXXXXV----VVASVHFWKPEAAML 519
            GDDSALACLWRVWTPCRKKCKQDLPKAEGCPGKHEIRSCHTG RCT ANEGIYADLTFALDFGFSPAAG TPD+ DNAGA      A+ QD+WRSRVGDALASAVAS+LPESCGVLPGDVAISARH DSA    XXXXXXXXXXX           VVASVHFWKP +AML
Sbjct:  762 GDDSALACLWRVWTPCRKKCKQDLPKAEGCPGKHEIRSCHTGTRCTLANEGIYADLTFALDFGFSPAAGDTPDDNDNAGAAAAA--AIFQDRWRSRVGDALASAVASILPESCGVLPGDVAISARHPDSAAGTAXXXXXXXXXXXQLPPPSPEASGVVASVHFWKPGSAML 930
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LN99_9PHAE2.970e-7480.70Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1260999..1262192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons3
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348692.9454262-CDS-Ecto-sp6_S_contig10:1261000..12610991682348692.9454262-CDS-Ecto-sp6_S_contig10:1261000..1261099Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1261001..1261099 -
1682348692.9547155-CDS-Ecto-sp6_S_contig10:1261111..12614081682348692.9547155-CDS-Ecto-sp6_S_contig10:1261111..1261408Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1261112..1261408 -
1682348692.9631708-CDS-Ecto-sp6_S_contig10:1262069..12621921682348692.9631708-CDS-Ecto-sp6_S_contig10:1262069..1262192Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1262070..1262192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.540.1prot_Ecto-sp6_S_contig10.540.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1261001..1262192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.540.1

>prot_Ecto-sp6_S_contig10.540.1 ID=prot_Ecto-sp6_S_contig10.540.1|Name=mRNA_Ecto-sp6_S_contig10.540.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=173bp
GGGGGDGDDSALACLWRVWTPCRKKCKQDLPKAEGCPGKHEIRSCHTGDR
CTFANEGIYADLTFALDFGFSPAAGGTPDEGDNAGAAAAAAAAVIQDQWR
SRVGDALASAVASLLPESCGVLPGDVAISARHADSAAATAAGGGDDGQLP
PPPPENSVVVASVHFWKPEAAML
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mRNA from alignment at Ecto-sp6_S_contig10:1260999..1262192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.540.1 ID=mRNA_Ecto-sp6_S_contig10.540.1|Name=mRNA_Ecto-sp6_S_contig10.540.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1194bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1260999..1262192- (Ectocarpus species6 EcLAC_371)
GGTGGCGGCGGCGGTGACGGTGACGACAGCGCACTGGCGTGCCTGTGGCG
GGTGTGGACCCCTTGCAGGAAGAAGTGCAAGCAAGACCTGCCCAAGGCTG
AAGGGTGTCCGGGAAAACACGAGGTGAGATGGGGGGGGGGCATATGCGGA
TAGACAGACAGACTAGCACGCAGACAGATGGGCAGGCAGACACATAGTCA
GAGACGGACGGAGACCCCGGGGGGGGGAGGGGGAGGGATTATCTCGTGCG
CGCTTATTTTTCGGGAGGTTTCCCTCCTGATGAAGCGTTTCGATTAGCGG
TGGCAGGACACTCTCTGCGATTTCGGGTGGTGCTTGTCACCTGCGCGATT
TCCGCCTGTTTTCGCAGGTCGTCGACGTGCGCACTCGGGTTCTGGAAGCG
CAAAAAAGGCAAGCGCAAAAAAGGCAAGCGCAAAAAAGGCAGCTAGCTCT
CGATACCTTTCGCGAAGGAGTCTGTCTGCTTCCGTCGCGTGAGCCCAGGC
CTTCGCACACATACGGGGGGTGTTTTGTCCCTTGACGAAGGAGGGGGTGT
CCGGAGGACGGGGCTGTGAGGGGACTGAACGTCATGTCTCGACAACGACG
ACGACGACGACGAAAACGAGGTCGCCGATACCTCTTGCCAGAACCACTGA
CCGTCTTCTTCTCAAAGCTGGCGGGGTGGCTGAGCACGTCCGGCCACCCC
CAACTGGCGCGTCTTCCCCCTCCTGTCCTTTCACGCTTGCCCCTTTGCCC
CCTCCCCGGCCGACGAACAAAAAAATCAAAACAGATACGCTCCTGCCACA
CGGGGGACCGCTGCACCTTCGCCAACGAAGGCATCTACGCGGACCTGACG
TTTGCGCTCGACTTCGGGTTCAGCCCCGCCGCGGGTGGTACCCCGGACGA
GGGCGACAACGCCGGCGCCGCCGCGGCGGCGGCGGCGGCCGTAATCCAGG
ACCAGTGGAGAAGCCGAGTCGGGGATGCCCTGGCCAGCGCTGTGGCGAGC
CTTCTCCCGGAGTCTTGCGGCGTTCTGCCCGGCGACGTCGCTATCTCCGC
GCGACATGCGGACTCCGCCGCCGCCACCGCCGCTGCCGCCGAGGCTGGCG
GAGGCGACGACGGGCAGCTGCCGCCTCCCCCGCCGGAGAATAGCGTTGTG
GTAGCCTCGGTGCACTTCTGGAAACCCGAGGCGGCGATGCTGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1260999..1262192-

>mRNA_Ecto-sp6_S_contig10.540.1 ID=mRNA_Ecto-sp6_S_contig10.540.1|Name=mRNA_Ecto-sp6_S_contig10.540.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1260999..1262192- (Ectocarpus species6 EcLAC_371)
GGTGGCGGCGGCGGTGACGGTGACGACAGCGCACTGGCGTGCCTGTGGCG
GGTGTGGACCCCTTGCAGGAAGAAGTGCAAGCAAGACCTGCCCAAGGCTG
AAGGGTGTCCGGGAAAACACGAGATACGCTCCTGCCACACGGGGGACCGC
TGCACCTTCGCCAACGAAGGCATCTACGCGGACCTGACGTTTGCGCTCGA
CTTCGGGTTCAGCCCCGCCGCGGGTGGTACCCCGGACGAGGGCGACAACG
CCGGCGCCGCCGCGGCGGCGGCGGCGGCCGTAATCCAGGACCAGTGGAGA
AGCCGAGTCGGGGATGCCCTGGCCAGCGCTGTGGCGAGCCTTCTCCCGGA
GTCTTGCGGCGTTCTGCCCGGCGACGTCGCTATCTCCGCGCGACATGCGG
ACTCCGCCGCCGCCACCGCCGCTGGCGGAGGCGACGACGGGCAGCTGCCG
CCTCCCCCGCCGGAGAATAGCGTTGTGGTAGCCTCGGTGCACTTCTGGAA
ACCCGAGGCGGCGATGCTG
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