mRNA_Ecto-sp6_S_contig10.537.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.537.1
Unique NamemRNA_Ecto-sp6_S_contig10.537.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: D8LSN5_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN5_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 7.170e-116
Identity = 211/221 (95.48%), Postives = 214/221 (96.83%), Query Frame = 3 
Query:  498 LSDNKYLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSLFSVDGNEGMTPADSRAPSADPPFAGAXXXXXXXXXXXXXXXXXXXXXXXXXXERDRANKPWVAKVLDSMAEAWHVVVPIADDVTSVWLLVKVAAARMGPLWWVSAAALSAAGLERAWLVLTLCAVLALMPLLGMVRVVLAGLAWCARLCTFPPGTVCCLCV 1160
            LSDNKYLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFS+FSVDGNE +TPADSRAPSADPPFAGA XXXXXXXXXXXXXXXXXXXXXXXXX R RANKP VAKVLDSMAEAWHVVVPIADD TSVWLLVKVAAARMGPLWWVSAAALSAAGLERAWLVLTLCAVLALMPLLG+VRVVLA LAWCARLCTFPPGTVCCLCV
Sbjct:  120 LSDNKYLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSVDGNEAVTPADSRAPSADPPFAGAGXXXXXXXXXXXXXXXXXXXXXXXXX-RARANKPRVAKVLDSMAEAWHVVVPIADDATSVWLLVKVAAARMGPLWWVSAAALSAAGLERAWLVLTLCAVLALMPLLGIVRVVLAALAWCARLCTFPPGTVCCLCV 339
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: A0A6H5JMX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX8_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 2.980e-99
Identity = 233/241 (96.68%), Postives = 236/241 (97.93%), Query Frame = 3 
Query:   27 MSEAGTEIQESHGGDRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPPGLGELGALEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSDNKYLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSLFSVDGNEGMTPADSRAPSADPPFA 749
            MSEAGTEIQESH GDRDALL LYH TGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIP GLGELGALEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSDNK+LLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFS+FSVDGNEG+TPADSRAPSADPPFA
Sbjct:    1 MSEAGTEIQESHAGDRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPAGLGELGALEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSVDGNEGVTPADSRAPSADPPFA 241
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 3.200e-67
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 3 
Query:  882 MAEAWHVVVPIADDVTSVWLLVKVAAARMGPLWWVSAAALSAAGLERAWLVLTLCAVLALMPLLGMVRVVLAGLAWCARLCTFPPGTVCCLCVLGCCWRCLNFSKDGPRCNGSTATRLL 1238
            MAEAWHVVVPIADD TSVWLLVKVAAARMGPLWWVSAAALSAAGLERAWLVLTLCAVLALMPLLG+VR+VLA LAWCARLCTFPPGT+CCLCVLGCCWRCLNFS DGPRCNGSTATRLL
Sbjct:    1 MAEAWHVVVPIADDATSVWLLVKVAAARMGPLWWVSAAALSAAGLERAWLVLTLCAVLALMPLLGIVRIVLAALAWCARLCTFPPGTLCCLCVLGCCWRCLNFSMDGPRCNGSTATRLL 119
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: A0A6B0WES6_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0WES6_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 5.120e-18
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:   21 PAMSEAGTEIQESHGGDRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPPGLGELGALEHL 278
            PA  +   E     G DR+AL+ LYH TGGP+W N + W SD PL  WYGVTT+S GRVV LEL  N+L G +P  LG+L  L+ L
Sbjct:  349 PAPGQTPAEADGDAGTDREALVALYHATGGPNWRNDANWLSDEPLRRWYGVTTDSGGRVVRLELSSNDLSGELPAELGQLSELQWL 434
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: A0A6L7WC15_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7WC15_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 5.720e-18
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:   21 PAMSEAGTEIQESHGGDRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPPGLGELGALEHL 278
            PA  +   E     G DR+AL+ LYH TGGP+W N + W SD PL  WYGVTT+S GRVV LEL  N+L G +P  LG+L  L+ L
Sbjct:  349 PAPGQTPAEADGDAGTDREALVALYHATGGPNWRNDANWLSDEPLRRWYGVTTDSGGRVVRLELSSNDLSGELPAELGQLSELQWL 434
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: A0A524RR67_9CYAN (Uncharacterized protein n=2 Tax=Aphanocapsa feldmannii TaxID=192050 RepID=A0A524RR67_9CYAN)

HSP 1 Score: 87.4 bits (215), Expect = 2.530e-15
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:   69 DRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPPGLGELGALEHL 278
            DRD L+ LY+ T G  WH  + W S++P++EWYGVTT+S+GRV  L+L  N L G IPP LG L  LE+L
Sbjct:   88 DRDVLIELYNATNGDGWHRNANWKSNKPISEWYGVTTDSSGRVTELDLSENALTGRIPPALGNLTNLEYL 157
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: A0A6N8V3M1_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V3M1_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 3.370e-15
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 3 
Query:   30 SEAGTEIQESHGGDRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPPGLGELGALEHL 278
            S AGT  + +   DR+ L+ LY  T GP+W N + W ++ PL +WYGVTT++AGRVV L L YN L G +PP +G L  L+HL
Sbjct:  278 SHAGTGEECAPLTDREILVRLYEATDGPNWDNNTNWLTEAPLRQWYGVTTDAAGRVVRLVLAYNGLNGVVPPEIGGLANLQHL 360
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: A0A6L8E604_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L8E604_9CHLR)

HSP 1 Score: 88.2 bits (217), Expect = 4.020e-15
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 3 
Query:   69 DRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPPGLGELGALEHL 278
            DR+AL+ LYH TGGP+W N + W SD PL  WYGV T+  GRVV LEL  N+L G +P  LG+L  L+ L
Sbjct:  280 DREALVALYHATGGPAWRNDANWLSDEPLRRWYGVATDPGGRVVRLELSSNDLSGELPAELGQLSELQWL 349
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.320e-15
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 3 
Query:   21 PAMSEAGTEIQESHGG---------DRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPPGLGELGALEHL 278
            PA   A  ++Q   G          DR+AL+ LY+ TGG  W N+  W +   L++WYGV  +S GRVV L L  NNLQG+IPP LG+L AL+ L
Sbjct:   75 PAYYRACAKLQRKGGSAPYYTMAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTIPPELGQLTALQFL 169
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.860e-15
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 3 
Query:   69 DRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPPGLGELGALEHL 278
            DR+AL+ L+  T G  W     WG+   L  WYGV  N+ GRVV L L  NNLQGS+PP LG LGAL+HL
Sbjct:    5 DRNALIALFQATRGAEWRKSDNWGTSEGLGTWYGVDVNAEGRVVKLSLYNNNLQGSLPPQLGNLGALQHL 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSN5_ECTSI7.170e-11695.48Hypothetical leucine rich repeat protein (Partial)... [more]
A0A6H5JMX8_9PHAE2.980e-9996.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME9_9PHAE3.200e-6794.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B0WES6_9CHLR5.120e-1852.33Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A6L7WC15_9CHLR5.720e-1852.33Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A524RR67_9CYAN2.530e-1554.29Uncharacterized protein n=2 Tax=Aphanocapsa feldma... [more]
A0A6N8V3M1_9BACT3.370e-1549.40BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
A0A6L8E604_9CHLR4.020e-1555.71Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A6H5KVC7_9PHAE4.320e-1545.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUH5_ECTSI5.860e-1554.29Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1215662..1226163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score90.5
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D7G3R3
Model size1240
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_003230.4
Cds size1212
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.537.1prot_Ecto-sp6_S_contig10.537.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1215662..1226137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348706.2725184-CDS-Ecto-sp6_S_contig10:1215661..12160831682348706.2725184-CDS-Ecto-sp6_S_contig10:1215661..1216083Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1215662..1216083 -
1682348706.2814112-CDS-Ecto-sp6_S_contig10:1216656..12168721682348706.2814112-CDS-Ecto-sp6_S_contig10:1216656..1216872Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1216657..1216872 -
1682348706.2886236-CDS-Ecto-sp6_S_contig10:1217470..12175481682348706.2886236-CDS-Ecto-sp6_S_contig10:1217470..1217548Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1217471..1217548 -
1682348706.2958-CDS-Ecto-sp6_S_contig10:1218202..12182771682348706.2958-CDS-Ecto-sp6_S_contig10:1218202..1218277Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1218203..1218277 -
1682348706.30295-CDS-Ecto-sp6_S_contig10:1218593..12186611682348706.30295-CDS-Ecto-sp6_S_contig10:1218593..1218661Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1218594..1218661 -
1682348706.3100898-CDS-Ecto-sp6_S_contig10:1219946..12200221682348706.3100898-CDS-Ecto-sp6_S_contig10:1219946..1220022Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1219947..1220022 -
1682348706.3172896-CDS-Ecto-sp6_S_contig10:1221063..12211351682348706.3172896-CDS-Ecto-sp6_S_contig10:1221063..1221135Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1221064..1221135 -
1682348706.324483-CDS-Ecto-sp6_S_contig10:1222979..12231441682348706.324483-CDS-Ecto-sp6_S_contig10:1222979..1223144Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1222980..1223144 -
1682348706.3315997-CDS-Ecto-sp6_S_contig10:1226097..12261371682348706.3315997-CDS-Ecto-sp6_S_contig10:1226097..1226137Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1226098..1226137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348706.3406212-UTR-Ecto-sp6_S_contig10:1226137..12261631682348706.3406212-UTR-Ecto-sp6_S_contig10:1226137..1226163Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1226138..1226163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.537.1

>prot_Ecto-sp6_S_contig10.537.1 ID=prot_Ecto-sp6_S_contig10.537.1|Name=mRNA_Ecto-sp6_S_contig10.537.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=404bp
MSEAGTEIQESHGGDRDALLTLYHCTGGPSWHNRSGWGSDRPLNEWYGVT
TNSAGRVVALELRYNNLQGSIPPGLGELGALEHLHLTNNELHGAIPPELG
RLHSLTDLRLYCNHLSGILPPELGNLHALKKLVVYSNDLSGTVPPELEGL
RALEELLLSDNKYLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSS
RWEDATLEDDSKTIFSLFSVDGNEGMTPADSRAPSADPPFAGAGGGAGAT
GGGGATEKQRERQGGRRRRERDRANKPWVAKVLDSMAEAWHVVVPIADDV
TSVWLLVKVAAARMGPLWWVSAAALSAAGLERAWLVLTLCAVLALMPLLG
MVRVVLAGLAWCARLCTFPPGTVCCLCVLGCCWRCLNFSKDGPRCNGSTA
TRLL
back to top

mRNA from alignment at Ecto-sp6_S_contig10:1215662..1226163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.537.1 ID=mRNA_Ecto-sp6_S_contig10.537.1|Name=mRNA_Ecto-sp6_S_contig10.537.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10502bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1215662..1226163- (Ectocarpus species6 EcLAC_371)
AGCTACTACTTTGGTCGTGACCGGCGATGTCTGAGGCAGGAACGGAGATA
CAAGAGAGCCATGGAGGTATGCAATGTATGGACGCATGTTGCATGCACGC
ATGCATGCATGCAAGCATTCACGCATCGACCAGCAGGGTACAACCGACGA
CTTGCCTGCGGTGGGATCACGACGAAAATGCCGCTCGTTGTTTATGAGTG
CTGCTGCTCATCTTACATCTACACGGCCGTTGCTGCTGCATGGCCTGCGT
TATCTTTGGCAGTGCACCGCCGGCAGCCAATAAGCACGCCGTTGTACGCA
CTGGGCTAACAGTCATTCATAGGTTGCTGGGTGTATGTGGCGCCCAAAGG
GCATGGGACAGCGCCGGCTTTTCCCTACTTGTAGTCGTTTACAGCAGTCA
GTCTTGCCTCCCCCGCCGTTGACAGGTTTTCCCCCTTGTTTTTCCTTTCC
CCCAAGAGAACTTTGTCAGACGACGGACACAACCGATTTCATGATAAAAC
GGTTCCTTCTCCCCCTTATGTTTCGTGTGTTACTGTCTCCTGACCCTTGC
AGAGGTTTAAGGCCCTCTGCTGACTTGCATTCTGTTTTTGGGGTTGGTCC
TGCCCCTGAACCCCATTTCAACACTTTCGACTGCCGCACGCCGCGTACCG
TAAAGAATAGCACAGGGTTAACGCTAGCCGCACAGGGGCAGCGGTCGTTA
TTCTTTTTTTTTTTTTAGCCAAAAGTACGCTCCAAGCGGCGTTCGCTTTT
AGGCACCCGGCGCGTCGGTCGCCAGTACCTGCTGGGGGCGCGTTATTATC
GGAATAAAATGCATCTAGGACCCAAGAGCGGCGCCCCCCGCCGCGATCTC
CAGAAGAAAACGATGAAACACACGGCGCGGCATCAAGCACACCTCTCCTT
GGCCTGCTTCATGTAGTATTGTTGTGTCACGAACCACCGACAACAACCTA
CTTGTTTGTCGTGTTCACGAACCACCATCAACAACCTACTTGCTGTCGAG
TAGAAAGCACGTGGTGCAAGCGTGCCGAGGGTTTGTTCGAGGTAGACATA
CGCGTGGTCTTGCGTATGTACTATCATAATACATCTCGAAGCAGTAGTCG
ATGGAGTATGTTGCAACGTCTCTCTGCTGCCATGCTTCGTTGTGGTGTCC
CATGTATATTGTTCGGTTGCAAGCAAGCCTTGGTGCCTCCTATACTGTTC
CCTTGCCCTTCGGGCCGGCTTCTTTTTTCGTGTCTTGTCGGGCCGTGTTG
GATGTCTGTTCAAAAATGAGTGACCCCTCCAACTTCGTTCCAGTCGTTCT
TGACGTCGGCTGAATTCGGCGACAACCGCGGGCGCACCCAGCAATTACAC
ACGATACACCTGAGACCAGGCGGAAAATAAAAGTTGCCCGACAACAATCT
GCGCGTTGTCGCACAGAAGAACGGTTGGCAAGCGTATGTCACGGAGTCTG
TGCATACCTCCACACATGCCCCATCAAGACGAAAAAAGTCCCATCAAGAT
AATAGGGACGACGCAGCGATTGCTCAAGCAGGTTCTTTGCACTAGAGGGA
GTTCCAAGCAGGTTCGTTGCACTAGAGGGCGTTCTATTTTTCTTCATCTA
CACCGGCCAGCGGAGGGTTTTGTGTTGCAGCGACATGCGCGTTGGCCCGA
CCAGGTGTCTTACCGGCGACCAGCGGTTCGACGGCTAAAGTCCAATACCA
CTCATCGCCCTAATTGACGCGCCGTTATGCCTTGAACTGCTGATATACAG
CAACAGTAGCTCATACCACTGCTAATAACGTCCGCACGAAAGTGGTAACC
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGGTAACAAATGCTCGCCTGCTGTCGGACCGACACA
CTGCGGGCCTCGCGCGCCAGCTTGAACGACCAGCAGTTTGGGGGATCGGG
ACTCGTGGGCGGCGAATACGCCCGTGACGAATGTTTGGTTTGGATCTAGT
ACGTAGAACTGCGGAGGTGTCGGAGCCAGCGGCAGCCTCCGATCCCACCA
CGCCGGCAGCGGATGCGAGCGTGCCAGCGCACGCGTCGCTGCTCCACGAT
GCTCTCTACATTTTTGTATAGAAAAATATCTTGGGTTTGGGGTAGAACCT
ATTTCCATCCTTGGCAGGAATCACTTGAGTCTACCTGCTTCAAACCTAGA
ATAAACACCGGCTTCAACACCTCAACAAACGACCTACAGTACGTACGTGC
TGTGCCGCCCACAGCATCATATGCGGAACATATCTGCTCGCTTGGGCAGC
ACACACCCAGCTGTTCCCACGTCTTCCCCGTGTTTCTGCTCGCCCCCCAG
GTGTTTCCCCCTGAGAAAAGCCAAGTGGAACGGGGCGTTCGCTACGTATC
CCGGGCCGTCTGAAAGAAAAATCTGATGGCAATGCGCCGACGGACCCGCA
GAGTGTTCGCCCTTTTTTTTTTTTGTGCCAGTGCTCCGGGACGTTCTCTG
TCCGAAGTGGCATTTATCCTATATGGCACTGCTCTACCTAGCTCTCTTTG
CCTGCCCCGTTCTCTTCACAATATTTTTACTCTACGCTGCTTGCCGACGC
CTTTGAGCCTCCTCACGGAGACGTGTCCTGAGCCTTTGCTGGCAAGCTAA
CGCGTGCGCGTTAACACTTCCTCTTCTCGTACAATTGTGTATGCATTTGG
CTAGGTACCATGTCGCTGTTTTCGGCATCACAGCTTTCGCGCACATGCTG
GCCAATCACATTACACCCCGGTCACCAGGGTTTAAAATTCGACATGGCAT
CTTTCGCGCACAGGCCGCCCAATGACGGTACACTACAATCCACAGCCGTT
CCTCCTGTCGTGCGTCTGTGCCCATACCACACTTCGGTGTCGCGTGTCCC
TGTCTCTCTTTTCTCTTTTCCTAACGCATGTCGGTAGCCCTCCCCGCCCG
CCGTCGCACAGAACCCCAAAAGAACTCGCGGTGTGTGTCCTCTTCGCCAT
GGAAACCGGTAACGCACAGGTGATCGAGATGCCCTGCTGACCCTCTACCA
CTGCACGGGGGGCCCCTCTTGGCACAACAGATCAGGCTGGGGGTCGGACA
GGCCGCTCAATGAGTGGTACGGCGTTACCACGAACTCGGCGGGAAGGGTC
GTGGCACTGGAGCTGAGGTACAACAACCTCCAGGGTGAGAGACAGGCGGA
AGGATCTAGCACAAGGAAGTGTCCCCGTGCTGATTTTTATCTTTTTGGTG
GGCGAGGCCAGGGTTCACCTTTCCTCCGCACGGCTCTAGCAACGGCCATC
GCCTAGGGTTTTGTGGTTGTTTTGGGAGGGTTTTTTACCCGGGGATGACG
AGCGCGCGTTGCCGGTGGTGTTCAAGGGGGACAGTAGCTTTCGCAGAGTT
TTTCGTACTATGTACAAATGTAGGAGACAACATTACAAGCGGGGAAGTTG
GGTTACAGTCAGGGTTAGGGAATACGGTCTGCGTCCCCTCTCCCTGTTCT
ATTTCATCGTAAACTTGTTAATCGCGCGAAGGCGTCCCTAGGGGGAAGGT
CGGCCTCAAACCAAGTTCTCTCGCGGTGTCGTTATTTTGGTAGCACGGGA
GGCGCCTGACACCTAGACGGGGTAAACAAATGGTGCCACACCATGCAACC
AGGAGCTTCGCAAGGAACCTTTGCACGCACGGGATGGGATTTGCCAGGTT
TCCGGTTGCCTAGAATCAAACATGGCTCTGAGAATAAGACTCTTTGTGAG
TTTCAGTGGAGCGTGCGGCGGACGCCGTAGACGCCGTTCACCGATCATGC
TGTCGCCGTTTCGACCATTTTCATCTTTGCTCTGTAACACCGCTTTTTAT
GCAAGCACAATGTTGCAAGAAAAGCTGCAAACGTTTCCTGCAGCTTTTCT
TCCAAACTTTTGTCAATGGAACTTTTGATGCACGCTCTTTATGAGACGAA
GAAAGTTTTGTGCACGGGACTGGCAGAATGCGGAGGCGTGATATATATAT
ATACATTGGCAACGGCGAGAAGAAGGAAGGAGGCACGCGCCTTTCGTATT
GCACCGCGAAAGAACCGGTCAAAGCGTGCGGGAGAGGGTAGTCGAAACCT
TTTTTCTCCACACTCACGATACTCCAAGGCATCTAACCTGGTACCGGAAA
GATGCTGGGTAGAGCTAGCTCCCTCGGGGTGGCATTACTGTTGCTGTTGC
CTTCTCCTTCGAAAAGTTATCGCTGGAAAACCAAACCATGCGCACACAAT
CCCTGCGAACTTGAACCAACTGCTCTCTGACGTGGGTACTTTGGGGTCGA
TCAATTTTTTTTCCCGATGCGCACGATACCCCACGGCACCAAAAACCTTG
GGCATGAAAGATGGAACAGAGAGCTATCTCCCACCGAGCGACCTTGCTAT
TGCTTTTTGCTTCCTTCTTCGGAAAGTTATCGGTGGATAACCAAACCCAC
CCGTGGCGGTCAAAAACATCGAGCTCGAACTGCCCGCTCGCGGCCGTTGA
CGGTTGTGCACAGCACAAACTTTTTTTCCCGGCGTATTCGGCACCTCACG
GCGTCAAACCTTGGCAGCCCATGTCATCACCTCCTTCCAGAAACATTGAT
GAGGCAACTCGTTAAGTATTCGTCGAGATCTCGGTGATCACAGCCTTCTC
ACAATCGATGCTGGAGAGGTTGTACGTGTGCGGTGGTAGCAGCTTGACGT
GAACCGGTATACTATAGTAGTTTCCGCCGTGCAGCTTTTCTCGCCCCTTC
CCGACTCAAGAAAAGCTGCAAAGCTTTTCGGCCAGATTGCAGCTTTTCGC
TCTGGAAAAAAAGTTGCAGAACTTTTCGTGCAACTTTTAGCTCCCATACT
GAGCGTACATTGGCTAAGCTGCAAGAAATGTTGCAGAAAAATTCAGCTTT
TTTCGCGGCATTGTGCTGCCATAAAAAGCGGTGTAAGTATGCACATACCA
GACGAGCAATCTTTCAGCTCCAAGGCAAAATCTTCAACAAATGATGGTCT
GCTGTCTAATTGCTTGGGGAAAACGCAGGTTCTATCCCACCGGGCCTGGG
TGAGCTAGGCGCCCTGGAGCACTTGCACCTGACCAACAACGAGCTCCACG
GTAAGGGCAACCAACGCCGTTGTGATTGACTTAGCCTCAACACCTCGAAT
CGCGTTTTCTCTCTCGGGAGTTTATTCCTTGCGAATTACGTACGTGCGAG
GGTTTTTCAGATGAAATCATCACGCTGGTTTGGGTCATTGCCAACACCTG
GTACCTTGTTGGCGTGTGTGTTTCCACTTGTACACAAAAAAGGTTTGGCG
GGTGCATGGCTGCGATTCTAGCGCACGGTTTGAACGCGCACGGTTTGAAC
CTTTTGGACCGCATAGAGCGAACCCTGGTTTGTGTAGAAGCCGACCTGCA
TCCACACTCCGTGGGCTCCGACTCCTTTCATCAACCAAAAAAATACCTCG
GGACGAGATTACCCACAGGGCAACAATGTCAACCAAGAAAGACTTCGGGA
CGAGATTTCCCACAGGGCAACAATGTCTTCTTTCTGTACCTAAAAACCGA
ACAGGACAAGAAGGGAAGCCTTGTGTCCACATCAAGCGTTATTTTCTTTA
CGCCGCAAGCTCAACGTGTAGTAGCGGTCTTGCATCTGCACGAGTCTTGA
GCGGTTGTTCATCACGTAGCGGTGCCTGCAATCGGCCACTTTGTGGGCAA
AGGACCCGGTACTTTAGATTTGACGAGCAACGTATTGTATATGTCCGTGC
CTCCCGCGGCTTCAGCGTCAGCTCCATAGAGCGACACGTATTTTGTGACC
TCACGAACCGTGCGGCGCTTTGAGTTTCGTCAGCGATCGCGCGAAAACGG
ACCACCCCACGCACACACGTTGATTGAGAGGTAGTGGACCCTCTGCCCCC
ACACGCTGCGATTCAGAGGTCGGTGTGCGGATTCTTTCAGCGACCCAACG
GCCACCAAGACAGCAACATTTTCGCAGCATGGCGGCGTTCTACCCACAGC
AGATCGTGTGGAAAATATGTGCCAGCAAGGCCGGCTCACCGCCGGCCACC
ACAACACAAGACTCATGCGAAGGCATACGCTCTTTCCGCTTTCCGTGTGC
GTCTCCCGGTAATTTGCCGGACCTCCGTTCCTCTCCCTCAGGAGCCATCC
CGCCCGAGCTTGGGCGACTCCACTCCCTTACGGATCTTCGTCTGTACTGC
AACCATCTCTCCGGTATGTTGGCCGAGCTGCCTCGTCCTTAGTTGTAGGT
GACATGTTTGGAAGACACCATCTTACTTCTAGTTTTTTTTTTTTGTTGTG
TGTTGGGAAGGTGTCGTTGCTTGCGCCCACCATGAAGATGATGCTGGCGG
CAGTAAGGCCAACGCCTTGGAAATGTGTCTCCCCCTGTAAATTGGTCGGT
TCAAGGTGTTTCCATGGCCGGTCGCCCCTGTGGTATAGTTGGTGTCCTCG
AAACCTTCTAGAGGTCAGGTCAGGGGTTCGAATCCCGGCTTAAGCGAGCT
TTTCTTGCAAAGTGAGTTTTTCTCTCGCTTCCGCTCTTGGCTTAGTGGAT
AGCGCTAGTTCGTGTGTACACAGAGGGAAGAGAGTGCTGAACTCTTCTCG
CAATAAAAATCGAAGGCAAAGTACCGCAGGAGGGGACGGTAGAGAGGGGC
TCTTCTGTGTGACCACGGGTTGGAGTAAACGGCACTAGTGCTGTGAGCGC
TGATTTGAAGTGAAGAAAAAAAAAAAAAAAAATGGCCAGTGCGCCGAGAC
GACACCAGCACGGGTCGACGCGCAGCAAGAGGCACAGAAAAGGGAAAAAG
CGGGGGAATTTACATCTTGACAACGATACCGACTGAACATGTACCAACGC
TGAGCGTTACAGGCATGCGAACAGGCTTTTGTAGTGAGCGATCACTGAAG
GAATGTTTACTATCGAGGGTGGGTGTTGGGAGAGCTTCTAGAAGAACACC
TTCGTAGGGCGTGGATTTTTCGATTTTTCGACGCTTTTCGACCCTTCATG
TTCTCCGTCACCAAGATGGAATTATTCCAATGCGCGTTTGATATCTAGCT
TCGTCTAAGCTCTCTCTTCAGTTGAAACAGACAGTCGTTCGGCCACTGCA
GCATTACACCAATGCTATGCAGTTCACGTTTCTACTTGGGATGGATTCAC
CGTTGCACCTACTTGTAGGCAGCTTGGGGTTTTGACAAAAAGGGTACAGA
TACACCGCAAAGACCGAACGCACGAAGGTCTGCGACGGGTGTTTGGCTAC
GTATGTTTTTTACCGAGTGGTTGCGAACAACTTTTCAAGCGCTTTCCCAA
GGTTTTCGAGTGATACTGCGTCTTGACTTGTGGCTCGTGCGCATGGGCGT
CCCAGCGTATCTTTCGTGAACTACAGTAGGAGGAGTTCGGCCCATGGATT
GATAACATGTTTTTTTTTTTTTGGGATGATACATGCACCAACCCCACCAC
CTCCACCAACAAAGCGCACGCATACATCTATCTTTTTTTTGCCTTCAGGC
AGCCTCCCGCCGGAGCTAGGAAATCTCCATGCTCTCAAGAAGCTAGTGGT
CTACAGCAACGACCTCTCCGGTGAGCCATCTGACCCCCCGCCCCTGTTTC
CGACGTCGACGGCCTCCCCCATATCGTTCAGATGACTCAGACCGTTTAGG
CATACCGGTATCAGGTTTTGCAGATATTGGGAGCTCTTTCATCCCCCCAC
TTTTCGACAACACAATGCATGCGCCGCAAAAAGCTAAGTGCCCATTATTC
TCTACGAACATACCGAACGCTTACCGCTACTCGAGATTTCGACCACCCAA
CAAGCGTTCCAACCATTGCCTGCCTCACTCGAGGCGCACGGCGCACTCTT
GCGTATGGACACCTGACGCAAATTTCGCAACTTCAGGGACGGTTCCGCCG
GAGCTGGAGGGGCTACGGGCTCTGGAGGAGCTCCTTTTGTCGGACAACAA
GTACCTCCTAGGTGCGTTAGCCTCTGGTTGACTTTTGTCTGCCTTTGGTT
GGCTTTTGTCAGGCTGTGGTTGACTCTCGTCAGCGTCTGGTTGACTATCG
CTAGCCTGCGGGTGACTGTCGTTAGCCTGTGGTTGGCGCTCGTTAGCCTG
AGGTTGACTTCCGTATCACACAAGGGGTTGTTTGGACTCCTCTCCGGGCG
GGACCCTGATGGGGTACATGTGACGGCTCGGGTTTTTGTCGAGTCATCGT
ACCGTTCGTCCTGCACAAGTACGGCGTGCTTGCTGCTCAGGGCTGTCCAC
GTGGGACCTTCGAACGGGCACGGAGAGCGTGCGGGTTGCATTGCCCCCTC
CTGCCCTACGTGCCTCGAACTGGAACTGGATGTGTGGTGCTGGCGGTTTC
GAGAGTTGTGGCCGCTTTTCTCGCTCTACATGTTTTTTTGGGGTGTGAAG
GACAAAGCGCAAAACTCACCTTGTTTTGGCTCTTTTTTTCTATTCCGGTG
ATCATGTCGTGGTACGCAGCAGATCTTCCGTCGGTGTACACCCGAAACTC
CTCACAATCAGCGCTTTTCGCCTTTTTCTACTACACCCGTAATTCCACCG
CATTTGCTCGAACTCGATCAATCAATCAATCGATCGATCTCCACGCACGA
CCACTGCCCCCGCAGGCGACATCCCGCCGGGGCTGGACCGAAACCTCGCT
CTGAACAGGCACACGAAGCAGCTCCCCGCCGGCGTACTCGCGGGTGAGGC
GCGGCGCGCGTGGGATTGTGATGCCGAGGCGGACCGCCTGTGCTGTTGAC
GCCGTCTTGCTTCTTGCACGTGTTGCTCGCCCCTTTCCCTCCGTCTCTTT
CGTGTGCGTACCTCGCTGTGGCCCTGGACCAATGGCCCCAACGATCGTGC
ACAGCAGTAGCACCGCTCCGAAGCTCCAAGTGTTCCCCACCCCTCCTCAA
GAAATAGCCGAGAGAGGATCGTTGATTGCCATCTAAATCTATCACGGCAC
GGTAACTGGAAGTTTCCGAGTGCGGCGGGGAGGGGTGACGAGAGGTAGTG
AATTCGGCAGGGATGTCCTCGGAGGTGATGTAGGCGGAGGTAGCCCCTCA
CACCAAGGCTGGTTTGGAAGAGTAGATGTAGATAGTCCGATCGAGACACG
GGCACATGTATTGCAGCATCTCTCAAAGCGTTCTAAGCCGGTCCGACAGA
GAGTACTGCTGCCGTGCATCTGTAGGAAGAAACACGTGTCCCGTTGTCTC
TCCCTCTCTTTGGATTTTGATGGCGCCTGCCACTGCTGCCGCTGCCGCTG
CCGCTGCCGCTGCCGCTGCCGCTGCTTCTGATGCTCTAAAGGCATGTTTT
CTCCGATTGGTAGCTCTCGCTGGGAGGACGCCACGCTGGAGGACGATTCG
AAAACGATATTCTCACTCTTCTCCGTAGATGGCAACGAAGGAATGACTCC
TGCTGATTCTCGTGCCCCTTCAGCTGATCCTCCATTCGCTGGTGCTGGTG
GTGGTGCTGGTGCTACCGGTGGTGGTGGTGCTACTGAGAAACAACGGGAG
CGCCAAGGTTTTCGTCTATATTATCTTGTCGTGGTTGAAATCGTCTGGCA
CGAAGCGCCTTGGCACCTAATCCCTGTCTGGTGACGTTCTTCCTAATCTG
TTCGAAGCACGGTGGTTCGGCGTGACTCCACCACGGATGAGCCATGATCC
AGTAGTCGCGCAAGGGTCCATGGGGGCGTAACAGGGTGCACAGGAAGGGC
ACGGAGATTACTACCGCGTGGTTATGCAGAAGGGTCAAAAGTCAACCCAT
CCGTTTAGTTGTTCCGCTTGCCCCCCCCCCCCCGCGTGTGATGCTTGCAG
ACCCTGTGCCCCTTGTAATCGCAGACCCTTTGCCCGTTGTAGTCGTTTGT
CCACTTGAATTTCGAATCTTTGAGCGGGTTCGGTGCTCCCTCGTGGTGCC
GCGGCAGTAAAGCGCCGTGCTACATATCCGCCTGGTCGAGCGCATGGTTT
TGGGTCGAAAGGTCGACATTGCGTTGTGATTTTCTGCTTTCGTCGGTCGG
TCCCAATCATCCAATTTATTCCCGATCGTACGTATCTATCGTGCCGTGTC
TGCCTCCCTCTCACCTTTTGTGCACACCAGGAGGAAGGCGACGCAGGGAA
CGAGACAGAGCCAATAAGCCCTGGGTGGCGAAAGTGTTAGATTCGATGGC
AGAGGCGTGGCACGTCGTGGTGCCGATTGCCGACGACGTCACCAGCGTCT
GGCTGCTGGTTAAGGTAGCGGCGGCGAGGATGGGCCCGCTGTGGTGGGTC
AGCGCCGCCGCGCTGTCGGCGGCCGGCCTGGAGCGCGCGTGGCTCGTCCT
CACGCTCTGCGCCGTGCTCGCCCTGATGCCGCTCCTAGGGATGGTTCGTG
TCGTGCTGGCCGGGCTGGCGTGGTGCGCCAGGCTGTGCACGTTTCCACCC
GGCACCGTGTGCTGCCTCTGCGTTCTCGGCTGCTGCTGGCGGTGCCTCAA
CTTCTCCAAGGACGGGCCGCGGTGCAACGGGAGCACGGCCACCCGCCTGC
TG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1215662..1226163-

>mRNA_Ecto-sp6_S_contig10.537.1 ID=mRNA_Ecto-sp6_S_contig10.537.1|Name=mRNA_Ecto-sp6_S_contig10.537.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1215662..1226163- (Ectocarpus species6 EcLAC_371)
ATGTCTGAGGCAGGAACGGAGATACAAGAGAGCCATGGAGGTGATCGAGA
TGCCCTGCTGACCCTCTACCACTGCACGGGGGGCCCCTCTTGGCACAACA
GATCAGGCTGGGGGTCGGACAGGCCGCTCAATGAGTGGTACGGCGTTACC
ACGAACTCGGCGGGAAGGGTCGTGGCACTGGAGCTGAGGTACAACAACCT
CCAGGGTTCTATCCCACCGGGCCTGGGTGAGCTAGGCGCCCTGGAGCACT
TGCACCTGACCAACAACGAGCTCCACGGAGCCATCCCGCCCGAGCTTGGG
CGACTCCACTCCCTTACGGATCTTCGTCTGTACTGCAACCATCTCTCCGG
TATCCTCCCGCCGGAGCTAGGAAATCTCCATGCTCTCAAGAAGCTAGTGG
TCTACAGCAACGACCTCTCCGGGACGGTTCCGCCGGAGCTGGAGGGGCTA
CGGGCTCTGGAGGAGCTCCTTTTGTCGGACAACAAGTACCTCCTAGGCGA
CATCCCGCCGGGGCTGGACCGAAACCTCGCTCTGAACAGGCACACGAAGC
AGCTCCCCGCCGGCGTACTCGCGGGCATGTTTTCTCCGATTGGTAGCTCT
CGCTGGGAGGACGCCACGCTGGAGGACGATTCGAAAACGATATTCTCACT
CTTCTCCGTAGATGGCAACGAAGGAATGACTCCTGCTGATTCTCGTGCCC
CTTCAGCTGATCCTCCATTCGCTGGTGCTGGTGGTGGTGCTGGTGCTACC
GGTGGTGGTGGTGCTACTGAGAAACAACGGGAGCGCCAAGGAGGAAGGCG
ACGCAGGGAACGAGACAGAGCCAATAAGCCCTGGGTGGCGAAAGTGTTAG
ATTCGATGGCAGAGGCGTGGCACGTCGTGGTGCCGATTGCCGACGACGTC
ACCAGCGTCTGGCTGCTGGTTAAGGTAGCGGCGGCGAGGATGGGCCCGCT
GTGGTGGGTCAGCGCCGCCGCGCTGTCGGCGGCCGGCCTGGAGCGCGCGT
GGCTCGTCCTCACGCTCTGCGCCGTGCTCGCCCTGATGCCGCTCCTAGGG
ATGGTTCGTGTCGTGCTGGCCGGGCTGGCGTGGTGCGCCAGGCTGTGCAC
GTTTCCACCCGGCACCGTGTGCTGCCTCTGCGTTCTCGGCTGCTGCTGGC
GGTGCCTCAACTTCTCCAAGGACGGGCCGCGGTGCAACGGGAGCACGGCC
ACCCGCCTGCTG
back to top