mRNA_Ecto-sp6_S_contig10.535.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.535.1
Unique NamemRNA_Ecto-sp6_S_contig10.535.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.535.1 vs. uniprot
Match: A0A6H5JMA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE)

HSP 1 Score: 510 bits (1313), Expect = 5.320e-178
Identity = 277/348 (79.60%), Postives = 283/348 (81.32%), Query Frame = 1
Query:    1 MTACVSGCRHPLWGGNGACTTVSGASTCLCDSGYASRDSMGRSSCVPRSVLVTAYATIAVTSLFTSIFLLWHANKFRQLSRLHRSTRSALMRFRVLLCG-----------------------------SFFAVGMACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIVVDFWMQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVSISVIGSFSFSGAKWPFQAVDTIIVLGAVTT----------------------VGLTGFLAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQIAGYFVLAGANASSAIAFTYTTAGRATAIIPFSIYVRV 891
            MTACV GCRHPLWGGNGACTTVSG STCLCDSGYASRDSMGRSSCVPRSVLV AYATIAVTSL TSIFLLWHA+KFRQLSRLH+STRSALMRFRVLLCG                             SFFA GMACNFSLATAMGGS SLPELYVLQTNYAVFLPVLMFGIPIVVDFW+QSLPMHLLPDHSFLAKAKVLAD+FKVFQALSMGLLV ISVIGSFSFSGA+WPFQAVDTIIVLGAVTT                      VGLT  +AHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQI GYFVLAGANASSAIAFTYT  GRAT IIPFS YVRV
Sbjct:    1 MTACVRGCRHPLWGGNGACTTVSGTSTCLCDSGYASRDSMGRSSCVPRSVLVMAYATIAVTSLITSIFLLWHASKFRQLSRLHQSTRSALMRFRVLLCGREKPLKSTSIRPLPLLVHRSRLCCRRLYRSFFAAGMACNFSLATAMGGSLSLPELYVLQTNYAVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADEFKVFQALSMGLLVGISVIGSFSFSGAQWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSTYVRV 348          
BLAST of mRNA_Ecto-sp6_S_contig10.535.1 vs. uniprot
Match: D8LSN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 4.860e-119
Identity = 183/192 (95.31%), Postives = 187/192 (97.40%), Query Frame = 1
Query:  316 MACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIVVDFWMQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVSISVIGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGFLAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQIAGYFVLAGANASSAIAFTYTTAGRATAIIPFSIYVRV 891
            MACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPI+VDFW+QSLPMHLLP+HSFLAKAKVLADKF VFQALSMGLLVSISV+GSFSFSGAKWPFQAVDTIIVLGAVTTVGLTG LAHQIIGCIDDARAKSSSQSAKVFY KTKAGILKQIAGYFVLAGANASSAIAFTYT  GRATAIIPFSIYVRV
Sbjct:    1 MACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIIVDFWVQSLPMHLLPNHSFLAKAKVLADKFNVFQALSMGLLVSISVVGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGVLAHQIIGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATAIIPFSIYVRV 192          
BLAST of mRNA_Ecto-sp6_S_contig10.535.1 vs. uniprot
Match: D8LSN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN6_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 7.990e-103
Identity = 166/207 (80.19%), Postives = 176/207 (85.02%), Query Frame = 1
Query:  271 MRFRVLLCGSFFAVGMACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIVVDFWMQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVSISVIGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGFLAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQIAGYFVLAGANASSAIAFTYTTAGRATAIIPFSIYVRV 891
            MRFRVLLCG            L  + G +RSLPELYVLQT+Y+VFLPVLMFGIPIVVDFW QSLPMHLLPDHSFLAKAKVLA KFK  QALSMGLLV IS+IGSFSF GA+WPF AVDTI V+GA +TVGLT  +AHQI+GCIDDARAKSSSQSAKVFY KTKAGILKQIAGYFVLAGANASSAI FTYT  GRATAIIPFSIYVRV
Sbjct:    1 MRFRVLLCGR-----NGLQLLLGDSDGRNRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWAQSLPMHLLPDHSFLAKAKVLAGKFKAVQALSMGLLVGISLIGSFSFGGAEWPFHAVDTIAVVGAASTVGLTDLVAHQIVGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAITFTYTATGRATAIIPFSIYVRV 202          
BLAST of mRNA_Ecto-sp6_S_contig10.535.1 vs. uniprot
Match: A0A6H5JML4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML4_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 2.250e-84
Identity = 146/184 (79.35%), Postives = 152/184 (82.61%), Query Frame = 1
Query:  406 LPVLMFGIPIVVDFWMQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVSISVIGSFSFSGAKWPFQAVDTIIVLGAVTT----------------------VGLTGFLAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQIAGYFVLAGANASSAIAFTYTTAGRATAIIPFSIYVRV 891
            LPVLMFGIPIVVDFW+QSLPMHLLPDHS LAKAKVLAD+F VFQALSMGLLV I++IGSFSFSGA+WPFQAVDTIIVLGAVTT                      VGLT  +AHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQI GYFVLAGANASSAIAFTYT  GRAT IIPFSI VRV
Sbjct:    3 LPVLMFGIPIVVDFWVQSLPMHLLPDHSLLAKAKVLADEFNVFQALSMGLLVGIALIGSFSFSGARWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSIDVRV 186          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JMA3_9PHAE5.320e-17879.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSN7_ECTSI4.860e-11995.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSN6_ECTSI7.990e-10380.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JML4_9PHAE2.250e-8479.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1202281..1207201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score71.2
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog2880.D7FP23
Model size1239
Hectar predicted targeting categorysignal anchor
Exons7
EggNOG free text desc.Domain of unknown function (DUF305)
EggNOG OGs2C8JY@1,2S34M@2759
Cds size1239
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.535.1prot_Ecto-sp6_S_contig10.535.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1202281..1207201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348706.160944-CDS-Ecto-sp6_S_contig10:1202280..12023031682348706.160944-CDS-Ecto-sp6_S_contig10:1202280..1202303Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1202281..1202303 -
1682348706.173282-CDS-Ecto-sp6_S_contig10:1202567..12028951682348706.173282-CDS-Ecto-sp6_S_contig10:1202567..1202895Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1202568..1202895 -
1682348706.1822274-CDS-Ecto-sp6_S_contig10:1203225..12033961682348706.1822274-CDS-Ecto-sp6_S_contig10:1203225..1203396Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1203226..1203396 -
1682348706.189676-CDS-Ecto-sp6_S_contig10:1204104..12041671682348706.189676-CDS-Ecto-sp6_S_contig10:1204104..1204167Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1204105..1204167 -
1682348706.1969094-CDS-Ecto-sp6_S_contig10:1204521..12047041682348706.1969094-CDS-Ecto-sp6_S_contig10:1204521..1204704Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1204522..1204704 -
1682348706.203833-CDS-Ecto-sp6_S_contig10:1206316..12064881682348706.203833-CDS-Ecto-sp6_S_contig10:1206316..1206488Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1206317..1206488 -
1682348706.211086-CDS-Ecto-sp6_S_contig10:1206902..12072011682348706.211086-CDS-Ecto-sp6_S_contig10:1206902..1207201Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1206903..1207201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.535.1

>prot_Ecto-sp6_S_contig10.535.1 ID=prot_Ecto-sp6_S_contig10.535.1|Name=mRNA_Ecto-sp6_S_contig10.535.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=413bp
MTACVSGCRHPLWGGNGACTTVSGASTCLCDSGYASRDSMGRSSCVPRSV
LVTAYATIAVTSLFTSIFLLWHANKFRQLSRLHRSTRSALMRFRVLLCGS
FFAVGMACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIVVDFW
MQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVSISVIGSFSFSGA
KWPFQAVDTIIVLGAVTTVGLTGFLAHQIIGCIDDARAKSSSQSAKVFYA
KTKAGILKQIAGYFVLAGANASSAIAFTYTTAGRATAIIPFSIYVRVLTG
VLAFGPFAVFTRFGPSATRRPPPSPSPQSPLEEARREEKETRTDDRLLFQ
RATSGVSSLFSRVLKLVESGAAVVVVTCEDTGVQGSRNEYEPVGGGTSQT
KGIGKDENGGFL*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:1202281..1207201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.535.1 ID=mRNA_Ecto-sp6_S_contig10.535.1|Name=mRNA_Ecto-sp6_S_contig10.535.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4921bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1202281..1207201- (Ectocarpus species6 EcLAC_371)
ATGACAGCTTGCGTCAGCGGGTGCCGACATCCCCTGTGGGGTGGAAATGG GGCGTGCACAACCGTCTCCGGGGCTAGCACGTGCTTGTGTGACTCGGGAT ATGCATCGAGAGACTCGATGGGCCGTTCGTCGTGTGTCCCGAGGTCCGTT CTTGTCACGGCGTACGCCACAATCGCTGTTACTTCTCTCTTCACCTCGAT ATTTCTCCTGTGGCATGCGAACAAGTTTCGTCAACTTTCGAGACTTCATC GGAGCACCAGATCGGCCCTCATGCGCTTTCGGGTGCTGCTCTGTGGCAGG TACGCGCACATTTGTATTGGAATGAAATCTTGAAATACTATATACGGGGG TTTTACAATGTAAACACCTGTCGAGCCACGATCTCGGTACGTTGCCGGTG TACGAAATCGTCGCCCAGCCGCAGATAGGAATCCATCCATAATTTCCATC AATAGTTTTGACAAGGCTAGGGTTCTTCGGCCCATGGGTTAAGCTACCAA TGGCAGCTAGCTTACGCAATTAGTTCCGTTGTTAGGCTCGAGTTCTCATA CTATGATAAATTCATAAATACTGTCGAGAATAAAATTCTTGGCTGCCAAG TTCTTGAGCGGGGACGCAAACGGTAGAGAAAAACCTCTCAAGAGCACATC CATTCGCTGGTTGCCCCTTCTCGTCCATCGCCCCTGACCGTGCTGTCGCC ATTTGTACCGAAGCTTCTTTGCCGTTGGAATGGCGTGCAACTTCTCCCTG GCAACGGCAATGGGCGGTAGCCGTTCGCTGCCGGAGTTGTACGTTTTACA AACAAACTATGCGGTGTTTCTCCCGGTTCTGATGTTCGGGATTCCGATTG TCGTGGACTTCTGGATGCAGAGCCTGCCGATGCATGTGAGCGACCAAGCC CTTAGTCTACACTATACTTCTAGACATGAAACACAATGTATCTGCCAGTC GCTGCGTTGGTTTGCTCTGTTCGCCGCTTCCATACTTCGTTGCACCATTC ACTGCCTTGCGTGGTGGGATAACTTCGGATAACGCTCAGCCAAAGCGGAA GTTGGGTATCTCGTCGCTTAGGTGAGCAAAAGAGTCCAGATAACCGCGCG CTTGTAGGTTGCGCGTGTTGAAGCTGATGGGCCGATTGATCCCCCTTTCC CAGTGGAGCTGCGTAAGATGTGTCGATGGCGTCGGTGCTAGGCTTGCATA CGCGGCCTTCATGTATCAGCTCATCGCCGCTCATCATGCGCTTCCTGCGT GTGCCACGCCCGTGGGATACCTGCGTCTATAGTGGCGACTCGTGTACCAT CGTGATCGCTCATGATTTGTACGGTACGCGAGGTGTTCCTGGGATGCACC GCCCACGGTGGTTGCTCATGATAGGCCGTAGGGTGCTCATGGGACGACGG TATATCTTAGGTTGCCATGCGTGGGAGCGCCCAAGGCTGTCGTGGAGGCT CACAGGTTCGAGCTTGGTGTCGATGGATCCCCCGATGGCCCAAAAGCCAC GAAAGGACGCCTCGTGGGCTCGGATGCGTCGCGATATTCACCGGAACGAC TCCCGATGTGATCGTTAAGATTCTGATAAACAGCTTACGTGTCGTCCGCT AGGAGACGTCGGTCCTCACTGGCAGCGCATGGGCCGCCGTCGACACGCTC ACGACGACCCTAGAGTGGCCCGCTCAAGCACACACATGCCGCCAACGACG GCTCACGGCAATAGATCGGCCGTCACTAGTAGTCCATATGCAAGTTGCGG GGCTCCATGGGATTAATCATTTGCGTGGTAAAACGCCTCATCAATATTAA TGGGACCCGTAAGGCAGCCCATGAGCCGTCCGATGGCCCATGAGCCGTCC GATGGCTCATGAGCCGCCCGATGGCCCATGGGCCGCTGGTGAGAGTATGA ACCGCCGCCCGTGGCCCCATAAGGGCTTCGATGACAGTCCATGAGCCGTC TCATGGGTTGAGAACTCAAGACACCCCCCCATGTCCTACGTCCGCCATAG GCCGTCTGCTCCTTGATGGTAGTCCAAATGACGTCGCACGCACGCCCTAT CGAAAGCACCCATGCTGACAAGCCTCGCTGTGGCTCCCTTGTGGAGGGTG TGTACAAGGCTGATTACCTACCTAGTTGTGCTTCAGCATGGAAACCTCTT CTCACAGGGGAGGAGTGGCTATCAGGCGGCTACTCGACCTGTCCAGGCAG GCTTTCTGTCGAATCACCTTTGACTGCCCGTGGCCTAATTTTTTCTCAAC AAACAAAATCATGCTGTCCCTCTTCCCCTGCCTCGGCCCTCGAGAATGGT GCCAGTCGCATCACACTTGGCGTACATTGCAGGAGAGACGCTCCGTTTTT CAAAGATGTGGCGAAACATCTTACCACATGGTCTGTTTGTCGCGAAAGAA AAGAGAAGTCAATCGCCGCCGAGAACGACAAAATGCCCGCTACAAAAAGT CTAACCACCGCTAAGCCCCACTTCATCTCCCCCCCCCCGGTCTGCAGCTG CTTCCCGACCACAGCTTTCTGGCGAAGGCAAAGGTCCTGGCAGACAAGTT CAAAGTCTTCCAGGCGCTCAGCATGGGGCTCCTGGTCAGCATCTCCGTGA TTGGCTCGTTCTCTTTCAGTGGCGCGAAGTGGCCGTTTCAAGCCGTTGAC ACTATCATTGTCCTCGGTGCGGTCACAACGGTGAGAGCCGTAGCCAACCG ATCAGAGCCGCCGAAACGGTGTTTCGTTCACCACCCCGTCAACGAGTTGT CGTCGTCGTCGTTGTCGTTAGGACTTGTAGATCACGACGGGAGCGAGCGC GCGTAGAGAGGTAGGGGAGGGGCGTGCGATATGGAAGGATGGCCGGGGTT CGGTCTCGAGGCGAGAAAGTCTCCGGTGCATCATAGCTCTACTTCGCAGA GCGGCTGCATCGGAGAGAAACGAGTGAAACTGTACAGAAATTATGCGGGA TGATGCATGAACAAGGAGCGCGTGTCGTTCGCCGTACGTGCCCGCTTTGC TCGTTTGGTCGGTGGGAACTTCTGGAACCCAAAGGTTGGGCTTACAGGCT TCTTGGCACACCAAATTATTGGCTGCATCGACGACGCCCGGGCGAAGGTG AGCCGTGCCCAGGTTCTTGCGCGGGGGTGTTCTGGAAATAGTGGGTAGAG CGCGGCGACAATGGGCATCACCACGATTTTGTCTGCGCGATGCTCGTGTT CTTGCGTGATCCGTGGCCAACCAAGGGCTGCGGCAGAGGGCTTTGGGCTA GACGTGGTTGTCGCGCATCACAGTTTGTCCTCGTTCTTGTCCCATCCTCT TCTTCTTTTTCAACATTGCTTTTCGAACGACATAAGCACGAAGCTCCAAG AACAGAGGTGCTCAGATTGATTCGAAACCCAATTTCGAACGGATGGGCAG AGATAAAGTTTTTGTTTGAGTGGATGAGAGAGCGAGCGAAGGAAAAAGAG AGAGTGAGAGTAAACAATTTGGGGCAGAGGATGTACCGGTAATCCAGCCG ATGAACGATTGACATAAGTGTGACCACTGCCGGCTGCATCGCATGGATTT TGTTCATTCTATGGTCAGACCGTGCTTTGTGGCTGTGGTCATAGCTCACG CGACCCCCGTTTGCTGTACGCTCTTCCTCAAGGAAGCTGGATCACTGCGG TATGGTACCGCATATCAAGAGAGCGCTGCCATAACGCTATCGTTTTGAGG TCCGTTCTTTTGTGCGTTCTGCATGCACTCATCACGCTACGCATATCGCG CCCCCCGACGTTGTTATTTGCATTCTCATCTGCCCCCTTCGTGCAAACAA TGCAGTCATCGTCTCAGTCGGCAAAGGTTTTCTATGCCAAGACGAAAGCC GGGATCCTTAAGCAGATTGCGGGCTACTTCGTACTTGCCGGGGCGAACGC TTCCTCGGCAATCGCTTTTACCTACACGACGGCCGGGCGGGCGACTGCGA TCATCCCCTTCAGCATTTATGTACGCGTGAGCCACACCCAAAAAGTTGCC GTAGGTTCATTGTTGTTCACGTTCAACCATAGTAGACAATCGTACATCGG AAACAAACGTGATCTGTATCACACGTCCCCGGATTTCCTAGTTCGGGGCC AGCCTGTTTCCATAGGGGCGGGAGGTTCGGTCTTGGAATACCGCTGATAG TACGAAAAACACGTCCTACATACATGGACACATCGCCTGAGTGAAACACT TCGAACAAACAAGCCAGTGTCCTCTTCGACGTTAAATTCATTGAACGTTG TAGTCTCAAACTTCCCCTGGAACCATCACAACCGTCGTCGTAAACGACTC AACAAGGTGCTAACCGGAGTGCTAGCGTTCGGACCCTTCGCCGTCTTCAC AAGGTTCGGCCCCTCAGCGACACGGCGGCCACCGCCGTCACCCTCGCCAC AGTCGCCACTGGAGGAGGCGCGGCGGGAGGAGAAGGAGACGAGAACCGAC GACCGCTTGCTTTTCCAAAGAGCGACCTCCGGAGTGTCGTCGCTGTTCAG TCGGGTGTTGAAGCTCGTGGAGAGCGGCGCGGCGGTTGTGGTGGTGACAT GCGAGGATACAGGGGTTCAAGGATCGAGAAACGAATACGAGCCCGTGGGG GGGGGGACCTCCCAAACCAAAGGAATAGGGAAAGGTCCGTGATAAGGTCG CACTCAAAAAAGCGCTCGAGATAGATGTAAACCTTTGTTTCTGTGCGTAG AACCAAGAATGTGTAGGCGGTAGGACAAATTCTAATATGGTTGTGTAACC CCGAGTCGTAGCTCCTCAGTGGAAGCAAGACCGCAGCATGTGTGTAGATA GATCATGAAGAAAATGACAGCGTGGCACGCCCATAGATTGTTTCAACCCA TCCATTGCCTTCCACGACTTTCCAAACGTTTGTGTGGGCGTAAAAAAGAT GAAAACGGCGGGTTTCTCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1202281..1207201-

>mRNA_Ecto-sp6_S_contig10.535.1 ID=mRNA_Ecto-sp6_S_contig10.535.1|Name=mRNA_Ecto-sp6_S_contig10.535.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1239bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1202281..1207201- (Ectocarpus species6 EcLAC_371)
ATGACAGCTTGCGTCAGCGGGTGCCGACATCCCCTGTGGGGTGGAAATGG
GGCGTGCACAACCGTCTCCGGGGCTAGCACGTGCTTGTGTGACTCGGGAT
ATGCATCGAGAGACTCGATGGGCCGTTCGTCGTGTGTCCCGAGGTCCGTT
CTTGTCACGGCGTACGCCACAATCGCTGTTACTTCTCTCTTCACCTCGAT
ATTTCTCCTGTGGCATGCGAACAAGTTTCGTCAACTTTCGAGACTTCATC
GGAGCACCAGATCGGCCCTCATGCGCTTTCGGGTGCTGCTCTGTGGCAGC
TTCTTTGCCGTTGGAATGGCGTGCAACTTCTCCCTGGCAACGGCAATGGG
CGGTAGCCGTTCGCTGCCGGAGTTGTACGTTTTACAAACAAACTATGCGG
TGTTTCTCCCGGTTCTGATGTTCGGGATTCCGATTGTCGTGGACTTCTGG
ATGCAGAGCCTGCCGATGCATCTGCTTCCCGACCACAGCTTTCTGGCGAA
GGCAAAGGTCCTGGCAGACAAGTTCAAAGTCTTCCAGGCGCTCAGCATGG
GGCTCCTGGTCAGCATCTCCGTGATTGGCTCGTTCTCTTTCAGTGGCGCG
AAGTGGCCGTTTCAAGCCGTTGACACTATCATTGTCCTCGGTGCGGTCAC
AACGGTTGGGCTTACAGGCTTCTTGGCACACCAAATTATTGGCTGCATCG
ACGACGCCCGGGCGAAGTCATCGTCTCAGTCGGCAAAGGTTTTCTATGCC
AAGACGAAAGCCGGGATCCTTAAGCAGATTGCGGGCTACTTCGTACTTGC
CGGGGCGAACGCTTCCTCGGCAATCGCTTTTACCTACACGACGGCCGGGC
GGGCGACTGCGATCATCCCCTTCAGCATTTATGTACGCGTGCTAACCGGA
GTGCTAGCGTTCGGACCCTTCGCCGTCTTCACAAGGTTCGGCCCCTCAGC
GACACGGCGGCCACCGCCGTCACCCTCGCCACAGTCGCCACTGGAGGAGG
CGCGGCGGGAGGAGAAGGAGACGAGAACCGACGACCGCTTGCTTTTCCAA
AGAGCGACCTCCGGAGTGTCGTCGCTGTTCAGTCGGGTGTTGAAGCTCGT
GGAGAGCGGCGCGGCGGTTGTGGTGGTGACATGCGAGGATACAGGGGTTC
AAGGATCGAGAAACGAATACGAGCCCGTGGGGGGGGGGACCTCCCAAACC
AAAGGAATAGGGAAAGATGAAAACGGCGGGTTTCTCTAG
back to top