mRNA_Ecto-sp6_S_contig10.527.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.527.1
Unique NamemRNA_Ecto-sp6_S_contig10.527.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.527.1 vs. uniprot
Match: A0A6H5KT39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT39_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 5.390e-131
Identity = 194/207 (93.72%), Postives = 200/207 (96.62%), Query Frame = 1 
Query:   46 MRSPGCVALGAWVGLLGCRGTQAFLGAASPATTTSTRSTAYQASCGHAPRNNQLSAWGRSRALRMSGDDESKPAAAGPMPETEQQKVPSVTEMMDKAAEDDFVARASASSSSGGVMGPSKPPEEYKRKERESFELNKKPETNKWASGAFKRGVALQAVVLSFVIFLSFQPEEVGNLAVCAPFTRPGGCVGFGEWVQVVFFGAPIPPM 666
            MRSPGCVALGAWVGLLGCRGTQAFLGAASPATTTSTRSTAYQ+SCGHAP +NQLS WGRSRALRM+GDDESKPA AGPMPE EQ KVPSVTEMMDKAAE DFVARASASSSSGGVMGPSKPPEEYKRKERE+FELNKKPETN+WASGAFKRG+ALQAVVLSFVIFLSFQPEEVGNLAVCAPFTRPGGCV FGEWVQVVFFGAPIPPM
Sbjct:    1 MRSPGCVALGAWVGLLGCRGTQAFLGAASPATTTSTRSTAYQSSCGHAPHDNQLSTWGRSRALRMTGDDESKPAVAGPMPEMEQ-KVPSVTEMMDKAAEADFVARASASSSSGGVMGPSKPPEEYKRKEREAFELNKKPETNRWASGAFKRGLALQAVVLSFVIFLSFQPEEVGNLAVCAPFTRPGGCVSFGEWVQVVFFGAPIPPM 206
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BLAST of mRNA_Ecto-sp6_S_contig10.527.1 vs. uniprot
Match: D8LSP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP4_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 3.840e-89
Identity = 135/143 (94.41%), Postives = 137/143 (95.80%), Query Frame = 1 
Query:  238 MSGDDESKPAAAGPMPETEQQKVPSVTEMMDKAAEDDFVARASASSSSGGVMGPSKPPEEYKRKERESFELNKKPETNKWASGAFKRGVALQAVVLSFVIFLSFQPEEVGNLAVCAPFTRPGGCVGFGEWVQVVFFGAPIPPM 666
            MSGDDESKPA AGPMPETEQQKVPSVTEMMDKAAEDDFVARASASS   GVMGPSKPPEEYKRKERESFELNKKPETN+WASGAFKRG+ALQAVVLSFVIFLSFQPEEVGNLAVCAPFT PGGCV FGEWVQVVFFGAPIPPM
Sbjct:    1 MSGDDESKPAVAGPMPETEQQKVPSVTEMMDKAAEDDFVARASASSXXXGVMGPSKPPEEYKRKERESFELNKKPETNQWASGAFKRGLALQAVVLSFVIFLSFQPEEVGNLAVCAPFTHPGGCVSFGEWVQVVFFGAPIPPM 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT39_9PHAE5.390e-13193.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSP4_ECTSI3.840e-8994.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1143400..1145132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size670
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003110.1
Cds size669
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348705.5605571-CDS-Ecto-sp6_S_contig10:1143399..11435551682348705.5605571-CDS-Ecto-sp6_S_contig10:1143399..1143555Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1143400..1143555 -
1682348705.569544-CDS-Ecto-sp6_S_contig10:1144619..11451321682348705.569544-CDS-Ecto-sp6_S_contig10:1144619..1145132Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1144620..1145132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.527.1prot_Ecto-sp6_S_contig10.527.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1143400..1145132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.527.1

>prot_Ecto-sp6_S_contig10.527.1 ID=prot_Ecto-sp6_S_contig10.527.1|Name=mRNA_Ecto-sp6_S_contig10.527.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=223bp
QRRQVYSNSITCCSTMRSPGCVALGAWVGLLGCRGTQAFLGAASPATTTS
TRSTAYQASCGHAPRNNQLSAWGRSRALRMSGDDESKPAAAGPMPETEQQ
KVPSVTEMMDKAAEDDFVARASASSSSGGVMGPSKPPEEYKRKERESFEL
NKKPETNKWASGAFKRGVALQAVVLSFVIFLSFQPEEVGNLAVCAPFTRP
GGCVGFGEWVQVVFFGAPIPPM*
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mRNA from alignment at Ecto-sp6_S_contig10:1143400..1145132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.527.1 ID=mRNA_Ecto-sp6_S_contig10.527.1|Name=mRNA_Ecto-sp6_S_contig10.527.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1733bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1143400..1145132- (Ectocarpus species6 EcLAC_371)
CAACGCCGACAGGTATATTCAAACTCAATAACTTGCTGCTCTACGATGCG
TTCCCCTGGTTGCGTGGCGCTTGGAGCATGGGTGGGACTACTGGGATGCC
GCGGCACGCAGGCGTTCCTTGGTGCTGCTTCGCCCGCTACTACAACGAGC
ACGCGCAGCACCGCATATCAAGCCTCCTGCGGTCATGCCCCGCGCAACAA
CCAGCTCTCCGCCTGGGGGAGAAGTAGAGCCCTCCGCATGTCCGGCGACG
ACGAGAGCAAGCCGGCGGCGGCGGGGCCGATGCCCGAGACGGAGCAGCAG
AAGGTACCGAGCGTGACGGAGATGATGGACAAGGCGGCCGAAGACGACTT
CGTCGCCAGAGCCAGCGCAAGCAGCAGCAGCGGGGGAGTCATGGGTCCCT
CCAAGCCGCCGGAGGAGTACAAGCGGAAGGAGAGGGAGAGCTTCGAGCTC
AACAAGAAGCCCGAAACCAACAAGTGGGCCTCCGGCGCCTTCAAGAGAGG
GGTCGCGCTCCAGGTAGAATACTCTTGAGGCATGCGATGCAGCAGGCCGG
GGGGTACCCGGGAGGAAGCGAATTTGTTCTTGTTGCGTATCCCAGTACCC
AGCACCATTGCGCGCGACGACCCGCAAGGTCAACTGCAACTTGTCAACTT
GTCGCAACTCTGCAACTTGCAGCAAATCTCTATTTTTCGGGACGGGGAGT
TAAACCTGGTTGCTGTTGGGGGTCGGCCACATTCTACCGAAGTTCTACGA
AAGGTATAGTATGTATGTAACAATACTGGATGGACTACATGCGGATTGAG
GATGTTGATGGACTCCGCCCAACGGTACACGCTTGCTGCTGCTGGGCGTA
AACAGATCCTGTCCGTCCATTCAGAGTCGATTTTCAAAGCTCGATATCGT
CACCACAGGCACGTAACCTCCTGTGTCCGACAAAGGGACGCGCTGGGAAG
ACCTCGTTGGGGATCTAGGGTCTCGCAAACCTTCATATTTCGGTATTGCC
AAAGATAACTGCCGTAGTTATCCGAAACCGTGGGTGAGATCCAGCGGGTT
AGGGCTTCCGTATCGCAACATTCGGCACGACGGTATGGTTGCGACCTGGC
AAAGTTAGGCATCAACGCTATTGAAGCACGATCCTAGATGAGTACCTCCC
ACACGGTGCCACTGCTGGGTGTCCGAAGCGGTCGGTTGGTTGGTGGAGCG
TGTTTGTGGGGCGGCGTGTTTGTCTCGTCTCCTCCACGGCAGCAGCTTGC
TATTTTGTGAGATCCGCCACACGTGCAAGCCCCCGGACGCGGCTTCGTTC
CGTGGCCAACGCCCCTGCCTCCCAACAATTTTTTTGAGGAGCCGGGTATA
CATACATTAATGCTGCCTAAGTTGTCGCCGCATCTAAGAAGGTATTCGGA
CAACTACTGCACAAGCACCATTCCGACGTACATGTACAAGAATCGAGAGA
GAAAACAACGTAATGCCCCCCCTACTCGAGGACGCTTGGTCAATGGCCCA
ACATCTAAGGCATACAATACTTGAATGCGCCCCCCCTCCCTCCCCCTTGC
GTCGTTTGCCGGGTGTATGGTACTTAGGCGGTGGTGTTGTCCTTCGTGAT
CTTCCTCTCTTTCCAACCCGAGGAGGTCGGAAACCTGGCCGTCTGCGCAC
CATTCACGCGTCCCGGCGGCTGCGTGGGCTTCGGGGAGTGGGTTCAGGTC
GTGTTCTTCGGGGCCCCGATTCCCCCCATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1143400..1145132-

>mRNA_Ecto-sp6_S_contig10.527.1 ID=mRNA_Ecto-sp6_S_contig10.527.1|Name=mRNA_Ecto-sp6_S_contig10.527.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1143400..1145132- (Ectocarpus species6 EcLAC_371)
CAACGCCGACAGGTATATTCAAACTCAATAACTTGCTGCTCTACGATGCG
TTCCCCTGGTTGCGTGGCGCTTGGAGCATGGGTGGGACTACTGGGATGCC
GCGGCACGCAGGCGTTCCTTGGTGCTGCTTCGCCCGCTACTACAACGAGC
ACGCGCAGCACCGCATATCAAGCCTCCTGCGGTCATGCCCCGCGCAACAA
CCAGCTCTCCGCCTGGGGGAGAAGTAGAGCCCTCCGCATGTCCGGCGACG
ACGAGAGCAAGCCGGCGGCGGCGGGGCCGATGCCCGAGACGGAGCAGCAG
AAGGTACCGAGCGTGACGGAGATGATGGACAAGGCGGCCGAAGACGACTT
CGTCGCCAGAGCCAGCGCAAGCAGCAGCAGCGGGGGAGTCATGGGTCCCT
CCAAGCCGCCGGAGGAGTACAAGCGGAAGGAGAGGGAGAGCTTCGAGCTC
AACAAGAAGCCCGAAACCAACAAGTGGGCCTCCGGCGCCTTCAAGAGAGG
GGTCGCGCTCCAGGCGGTGGTGTTGTCCTTCGTGATCTTCCTCTCTTTCC
AACCCGAGGAGGTCGGAAACCTGGCCGTCTGCGCACCATTCACGCGTCCC
GGCGGCTGCGTGGGCTTCGGGGAGTGGGTTCAGGTCGTGTTCTTCGGGGC
CCCGATTCCCCCCATGTAG
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