mRNA_Ecto-sp6_S_contig10.519.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.519.1
Unique NamemRNA_Ecto-sp6_S_contig10.519.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: D8LSQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ2_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 3.930e-66
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 3 
Query:  204 MGVSEENKAIAEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPK 536
            MGVSEENKAIAEAK+KAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGE+DAALETVKAGLGRDPK
Sbjct:    1 MGVSEENKAIAEAKRKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEMDAALETVKAGLGRDPK 111
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A835Z4N5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N5_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.340e-64
Identity = 123/261 (47.13%), Postives = 175/261 (67.05%), Query Frame = 3 
Query:  204 MGVSEENKAIAEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXXGRIDPQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRVEDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEIIK 986
            M  +++  AIAE KK AGN AFA KD  EA+RLY+EAI+L+ S+++Y SNRSACYA  G+H+ A ++A+ CI++NP F KGYYRL+ AQ E+GE+D ALE V  GL ++P N DL RQ R +  KK                    G +D Q  +E +ELS Q  +T+RELAEV A LQ  LR+++R  LT+ E+  +     +Y+SVGK+F+  +K+E+  LLDAQ  ++ KSE QL+ K++YLE RL S+++NLNE+++
Sbjct:    1 MSSTDDINAIAEGKKAAGNAAFASKDYSEAIRLYTEAIQLNDSNHVYYSNRSACYASLGQHDEAAKDAQKCIELNPAFVKGYYRLSAAQLELGEVDKALEAVTEGLKKEPSNADLTRQLRVVKGKKAAAASKARQGGGGAP-----GGLDKQTFEEIRELSDQSEVTQRELAEVSANLQGCLRDQRRAQLTKTEVAGLGGDARLYRSVGKVFMLNSKKEIDTLLDAQATERAKSEEQLKGKKAYLENRLNSQKTNLNELLR 256
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A7S2FHS0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHS0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.380e-61
Identity = 119/267 (44.57%), Postives = 171/267 (64.04%), Query Frame = 3 
Query:  186 CRVSETM-GVSEENKAIAEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXXGRIDPQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRVEDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEII 983
            C + + +  +S +N   AEAKKK GNDAFAKK+ + A+  YSEAIELDP ++IY SNRS CYA  GK   A  +AE C+K+ P F KGY+R+A AQ EMG++DAA+ T+K GL +D  + DL    R + +KK                    GR+D    +E QELS Q   T REL+EV A+LQ  +RE+K   +T GE+D+V D TP+Y++VGKMF+   K++V   L  + ED  K +T+L S+++YL++RL S+++NL +++
Sbjct:    1 CSIDKRLTAMSSDNLVAAEAKKKEGNDAFAKKEYEAAIGFYSEAIELDPQNHIYYSNRSLCYAESGKFTEALADAEQCVKLEPSFVKGYHRVANAQFEMGQMDAAIATIKTGLQKDTGSKDLTNLLRKIRSKKQAAQAAARRPQ---------GRMDENTQKEVQELSEQYQATGRELSEVNAKLQGAMREQKATAITIGEVDQVTDETPLYRAVGKMFMLSGKDDVKTSLSNEMEDVEKRKTELTSRRTYLQRRLQSQEANLKDLM 258
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A7S2SWL7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SWL7_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.270e-52
Identity = 100/254 (39.37%), Postives = 161/254 (63.39%), Query Frame = 3 
Query:  234 AEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXXGRIDPQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRVEDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEIIKNIQ 995
            AE +KK GN+AFAKKD ++A++ YSEAI+LDP +++Y SNRS C+A + +   AK++AE C+K+ P F KGY+RLA AQ E+GE+DAA  T++ GL +DP   DL R  R +  KK                      +   + +E +E+S Q   T R+L EV A+L+AT +E++R  +   E++ + + TP+YQS+GKMF+ + +EE+ + L    E + K    L+S++ YL++RL S++ N+ ++ +++Q
Sbjct:   17 AEEQKKLGNEAFAKKDFEKAIQFYSEAIKLDPQNHVYYSNRSLCFAEKKRFAEAKQDAEQCVKLEPTFVKGYHRLANAQYELGELDAAASTIREGLKKDPNMPDLSRLLRKIKAKKAAIASARKGKQT---------NVSESMRKEIEEMSEQYKQTGRDLQEVRARLEATAKEQRRIAVMSNEVEHLPEATPLYQSIGKMFMLRPREEIKSTLTENAEGQEKRLADLKSREQYLQRRLHSQEENMKDLFQSLQ 261
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A7S2CYH7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CYH7_9STRA)

HSP 1 Score: 170 bits (430), Expect = 6.510e-46
Identity = 117/252 (46.43%), Postives = 168/252 (66.67%), Query Frame = 3 
Query:  234 AEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXXGRIDPQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRVEDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEIIKN 989
            AEAKKK GNDAFAKKD   A+ LYSEAIELDP ++IY SNRSACYA +     + ++A+ C+KI P F KGYYRLA AQ E+G  D A+ T++ GL +DP + DL R     + +K  XXXXXXXXXXXXXXXXXX          +Q+       T+REL EV+ +L ++ RE+K   LT  +++ V +   MY+SVGKMF+   K ++  +L  Q + + K++T+L S++ YL++R+ S++ N+ ++++N
Sbjct:    8 AEAKKKLGNDAFAKKDYKIAIELYSEAIELDPQNHIYYSNRSACYAAEKDFAGSMKDAQMCVKIEPSFAKGYYRLAVAQLELGSPDEAVSTIRDGLKQDPGHKDLAR-----LLQKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXSYQQ-------TERELQEVQGRLMSSQREQKMISLTSKQIENVPETNKMYRSVGKMFMLTPKADMEGILQEQGQTEKKTQTELMSRRKYLQRRITSQEENIKDLMQN 247
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A6U4EFJ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EFJ5_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.330e-44
Identity = 97/257 (37.74%), Postives = 149/257 (57.98%), Query Frame = 3 
Query:  228 AIAEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXXGRIDPQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRVEDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEIIKNIQA 998
            A A AKK+ GN+A+A KD D A+ LYSEAI LDP S++Y SNR+A +  +G++  A+ +A  C++  PDF KGYYRLA AQ E G++D A +++KAGL  D  N DL +Q R +  KK                     + D    QE  EL      T+REL++V+++ + T  + K+  +TR ++  +++   + + +GKMF+   K E+   L   +E   K + +L +KQ YL +RL S++ NL EI+ N Q+
Sbjct:   14 AQAAAKKQEGNEAYAAKDFDRAIALYSEAIALDPGSHVYYSNRAAVHHAKGEYTQAESDARECLRRKPDFVKGYYRLAQAQIEQGQLDEAEKSLKAGLNVDNGNSDLAKQLRLVRAKKASKGRQGGTKAGRGGGGAGP-KFDESTAQELTELGEAYQQTQRELSQVQSRQRMTAIDLKKVEITRQQVSMLDENAHILRGIGKMFMRSDKNEIITSLGESKEKGEKHQAELMNKQKYLARRLESQERNLKEIMANAQS 269
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A7S3P8D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P8D6_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.410e-43
Identity = 97/250 (38.80%), Postives = 144/250 (57.60%), Query Frame = 3 
Query:  246 KKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXXGRIDPQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRVEDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEIIKNIQ 995
            K+ GN AF+ KD  +A+  YSEAI++D S++++ SNRSA YA  GK E + E+A+  I+++P F KGYYRLATAQ E+ E DAA  T++ GLG +  N  LL+Q+R +   K                    G +DP    E  EL VQ     REL  ++       RE K    T+ +L  + + +  Y+SVGKMFL Q++EE+   LD   E+ +K ET L+ K  YLEK++ S++ N+ E++ + +
Sbjct:    9 KELGNQAFSAKDFAKAIERYSEAIKIDASNHVFFSNRSASYAGIGKWEKSAEDAKETIRLDPTFLKGYYRLATAQIELKEFDAAAATIRQGLGVEANNPQLLKQQRMVQQLKKSAEAAEKRKQTMPV-----GTMDPSTSSELNELQVQYMQMNRELETIKVDRARVDRELKLAEFTKTDLGELPETSACYRSVGKMFLRQSREEIVTHLDKNTEEASKMETTLKQKAEYLEKKMKSQRQNIEELVTSSE 253
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A7S0BYP4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYP4_9STRA)

HSP 1 Score: 162 bits (410), Expect = 9.410e-43
Identity = 97/258 (37.60%), Postives = 148/258 (57.36%), Query Frame = 3 
Query:  222 NKAIAEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXX---GRIDPQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRV--EDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEI 980
            +K++AE KK+ GN AFA K+ +EA+ LY+EAI+ +P++++Y SNR+A Y    K + +  +A+ CI+++P F KGYYRLATAQ E+ ++D A  T+K GL  DP N  L +Q R +  KK                       G +D  V QE  +L  Q   T RE   V A +    RE++   LT+ EL+++  E  + MY+S+GKMFL   +E +   L    +D+ K E  L+ K  YLE+R+ S++ N+ E+
Sbjct:    9 DKSLAEQKKELGNKAFASKNYEEAIALYTEAIKCEPNNHVYFSNRAASYGSISKWDSSASDAKKCIELDPTFVKGYYRLATAQIELNDLDGAHSTIKQGLNVDPSNNQLSKQLRIVNGKKKEIAKAIAKKAKSAGNNAAPRSVGNVDSSVSQELMDLQEQYISTNREYNTVTAHITKAQREQRTNELTKSELEKLPQESSSKMYRSIGKMFLLSGREAIMDHLGTAMKDEAKKEVDLKQKLDYLERRIKSQRQNIQEL 266
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A6U1NHW5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NHW5_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.640e-41
Identity = 98/259 (37.84%), Postives = 150/259 (57.92%), Query Frame = 3 
Query:  213 SEENKAIAEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXXGRIDPQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRVEDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEIIKN 989
            ++EN  IA+AKKKAGN+AFA K+ + A++LYSEAIELD S++++ SNRSACYA +     A E+A+  I+++P F KGYYRL  AQ EMGE   A  TV+ GL  D  + DL +  R +  +K                     ++D    +E  EL  ++  T+ EL +   +L    ++ +R  LT   L++    T  Y+++GKMFL   + EV   L+ Q E     ET++  +Q+YLE+RL S+Q+N  ++++N
Sbjct:    5 TQENIEIADAKKKAGNEAFAAKNYERAIKLYSEAIELDSSNHLFFSNRSACYAAKRDWTSAAEDAKKIIELSPSFVKGYYRLGLAQMEMGEFGPAAATVRKGLELDNGSSDLQKLLRLIKARKAQAAGKRGESGMTRQQ-----KMDEATRKEILELQEEMQKTQNELRQAGLRLNHCRKDLRRTTLTFSNLEQTPHLTTAYRAIGKMFLRCERPEVMTYLEQQTEKGKDMETKILGQQAYLERRLKSQQANYEDLVEN 258
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Match: A0A6V2AJX7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2AJX7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 8.600e-40
Identity = 106/260 (40.77%), Postives = 156/260 (60.00%), Query Frame = 3 
Query:  234 AEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALETVKAGLGRDPKNGDLLRQKRSLMTKKXXXXXXXXXXXXXXXXXXXXGRIDPQVI------QEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDR--VEDGTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLASEQSNLNEIIKN 989
            AE KK+ GN AF  K  DEA++ Y+EAI+LD ++++Y SNRSA +  +G    A  +A+ CIK+NP F KGYYRLATAQTE+G  DAA+ T+K G+  +P N  L +  R +  K+      XXXXXXXXXXX     + P         +E  +L  Q   + RE   V+A +  + RE K   LT+ EL+   V +   MY+ +GKMF+  T+ ++   LD   E+++K E  L++K  YLE+++ S+Q N+ E+ K+
Sbjct:    6 AEEKKELGNKAFGSKSYDEAIKHYTEAIQLDATNHVYFSNRSASHGGKGDWADAATDAKECIKLNPSFVKGYYRLATAQTELGNWDAAIATIKQGMNVEPDNSQLSKLLRQVKAKRANAKRAXXXXXXXXXXXSNTSGVGPTTSFASTTDRELLDLQEQFITSNREYNTVKANIHKSQREVKMNELTKAELETIPVTEDAKMYRGIGKMFMLSTRGDIMNHLDTCVEEESKREESLKNKAEYLERKMKSQQLNIQELTKS 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSQ2_ECTSI3.930e-6698.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4N5_9STRA1.340e-6447.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FHS0_9STRA2.380e-6144.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SWL7_9STRA1.270e-5239.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CYH7_9STRA6.510e-4646.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U4EFJ5_9STRA2.330e-4437.74Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3P8D6_9STRA5.410e-4338.80Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S0BYP4_9STRA9.410e-4337.60Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6U1NHW5_9STRA2.640e-4137.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V2AJX7_9STRA8.600e-4040.77Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1038521..1046417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score218.0
Seed ortholog evalue5.3e-54
Seed eggNOG ortholog2880.D8LSQ2
Model size1495
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-15_003030.1
Cds size804
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.519.1prot_Ecto-sp6_S_contig10.519.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1039009..1045796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348704.7977698-UTR-Ecto-sp6_S_contig10:1038520..10390081682348704.7977698-UTR-Ecto-sp6_S_contig10:1038520..1039008Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1038521..1039008 -
1682348704.8819041-UTR-Ecto-sp6_S_contig10:1045796..10458091682348704.8819041-UTR-Ecto-sp6_S_contig10:1045796..1045809Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1045797..1045809 -
1682348704.8896165-UTR-Ecto-sp6_S_contig10:1046227..10464171682348704.8896165-UTR-Ecto-sp6_S_contig10:1046227..1046417Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1046228..1046417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348704.8092713-CDS-Ecto-sp6_S_contig10:1039008..10390951682348704.8092713-CDS-Ecto-sp6_S_contig10:1039008..1039095Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1039009..1039095 -
1682348704.8178585-CDS-Ecto-sp6_S_contig10:1039926..10400181682348704.8178585-CDS-Ecto-sp6_S_contig10:1039926..1040018Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1039927..1040018 -
1682348704.8266304-CDS-Ecto-sp6_S_contig10:1040547..10407041682348704.8266304-CDS-Ecto-sp6_S_contig10:1040547..1040704Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1040548..1040704 -
1682348704.8360667-CDS-Ecto-sp6_S_contig10:1041060..10411971682348704.8360667-CDS-Ecto-sp6_S_contig10:1041060..1041197Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1041061..1041197 -
1682348704.8453493-CDS-Ecto-sp6_S_contig10:1042953..10430331682348704.8453493-CDS-Ecto-sp6_S_contig10:1042953..1043033Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1042954..1043033 -
1682348704.8544455-CDS-Ecto-sp6_S_contig10:1043641..10437841682348704.8544455-CDS-Ecto-sp6_S_contig10:1043641..1043784Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1043642..1043784 -
1682348704.8649876-CDS-Ecto-sp6_S_contig10:1044505..10445661682348704.8649876-CDS-Ecto-sp6_S_contig10:1044505..1044566Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1044506..1044566 -
1682348704.874017-CDS-Ecto-sp6_S_contig10:1045749..10457961682348704.874017-CDS-Ecto-sp6_S_contig10:1045749..1045796Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1045750..1045796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.519.1

>prot_Ecto-sp6_S_contig10.519.1 ID=prot_Ecto-sp6_S_contig10.519.1|Name=mRNA_Ecto-sp6_S_contig10.519.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=268bp
MGVSEENKAIAEAKKKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSN
RSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEIDAALE
TVKAGLGRDPKNGDLLRQKRSLMTKKTAASSKAQRGGGGGGGGPGGGRID
PQVIQEFQELSVQLGLTKRELAEVEAQLQATLREKKRGVLTRGELDRVED
GTPMYQSVGKMFLSQTKEEVTALLDAQQEDKNKSETQLQSKQSYLEKRLA
SEQSNLNEIIKNIQAQG*
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mRNA from alignment at Ecto-sp6_S_contig10:1038521..1046417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.519.1 ID=mRNA_Ecto-sp6_S_contig10.519.1|Name=mRNA_Ecto-sp6_S_contig10.519.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7897bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1038521..1046417- (Ectocarpus species6 EcLAC_371)
GGGCAGAGAGAGGGTCGACAAAGGGCGGCGCCCGACAGAGTGGAAAACGC
ATGTACCCATGTAGCAAATGATCCGGTGTGTGGGTGCCGCTCCCCTTCTC
ATCGCACACCGTTGTTGCTGCTGCCGCTCTTGCTGTGTGCCACACTGCCG
CCTTGCCCCGTCCATACTGAGTACGGAGAGAGAAGTGCAGGTGTGCATGT
GTGCGTCTATGTGTTTCTGTGGTAGAAGGTAGGGGCGGCCGCTGCTTGTG
CGCTTGCAAAGCCTGCAAAACTTCAGAGTCGACATCGGCCGTAATTCAAA
CCCAACGCTTCGCTACAGTAAGAACACAGCTTGTATGCTTGTATCTTGTT
GGGCACGATGGTGTTGGGCTTGCACTGCGACGTTGTCGACCCGTTCGATG
TGTAAACCTTGTTGGAAGGGATGCAGGCGATGTTCTATTACACGTTTGCT
ACCCCCATCGCCCCCCCCCCAGCAAAACAAGTGAAAAGTCTATGCGGCAT
TTGGCCGTCCCGCCGTGTTCTTCGCTGTCTCTGCTGTGCAGGCTGGGTTG
CCCACCACCGACTATCAGTGTTTCTGTCCTCTCTGCTCGCTGGCTTTGTT
CTGCCCAGGGTGTCGGAGACGATGGGTGTCAGCGAAGAGAACAAGGCCAT
TGCCGAGGCGAAGAAAAAGTGAGTGGTACCGCCTGGCTCCGTAGTTATCC
GATTGTAGATACTCGTACAGGTGGTTCGCGGAAGATTCCACACCCCCTCA
CGCCGATTTTCAAAGCTCGAGGAGTAGTACAACACTTGCAGAAAAAAAGC
AGACAATTACGCTCCCGAGAATGGCGGCGTTGGAGATCTCCTAGTCAAGA
GCCTTCCGAAATATGTATCATTTGGTTTTGGGCGCGATATTCGTCGTGGA
GTAGCCGAGCTTTGGAAATCGGTCCAGGGGGTGCGGTGTCTTACGCAACC
TTACGGTATACGCTCTCTCGCCAAGGATGCAGACAAGCTTGTCGGGTCGA
GGCGGGGCTCGGCGGCCTATTTTGCGGCGTCGGTGGGTGTGCTTAGCTTA
TCACGCTCGCGAGCTCTTGTCGAGAGCGTTTGTCTGCACAGAATGGGAGT
GGCTCAAGTTCCTTTTGTCGACCAGCTCGCGTGAGAGACAGGACCGAGGC
CACGCGGAAAGTCGCGCCGTCAAGTCCATCACACACCCATACAGTGACAT
CCGCGTGACCCCCGGAGATCCAGTAGCCTTCGCGAGGATAATAAGTTGGT
TTTAGTAGGGTTTGCGGGTTGGGGTTAGGGGAAAGGGTTTCGAAACACAT
TTCTTCATTTACATACTGAATTAATCGCTTACTGAGAAGTACAATGCTTA
GCATCCTTGTGAAGGCGGTCCCGGAGATCTCGGATCTGCCGAAGAGTAAA
CACAAGCAGGCCTAAACGGCGTCTTCGTCCTGTGGGGTGGGCCTGGAAAA
CTCGTGTATTGCCATATAGAGGGCTGGCTAGTTTACGGCCATATCAAAAC
TTGCCGCTCGAGGCGCCGCACGCTCTTGTTCACAAGCAGTGCAAATCCAC
GCCAACCGCTTATTTTTCTTCTAATAACCCCGACCACATCTGGCTGTATG
TTTGCATGGCGTGACCCTAGTCTCGTATTCTTTCCGGGCGCAACAGTGTG
ATTTCTACTTGTCCCCCGCTTAGGTGTAACCCCACTCCGTTTTCACCACC
CGTAAAAGTTGTTGATGTTTGAATCTCCCACCCCATAAAACCCGCTTGCC
AATCAACGACGGCCCCCGCCGCCCCTCTCCGATGCTGCATTTCCCCCCGT
ATCGTTTGCTCGTTGTGGTTGGTTGTCCTGGTCGCTGCAACTGGAACGCA
GGGCGGGCAATGATGCGTTTGCCAAGAAAGATCTCGACGAGGCTGTACGC
CTCTATTCTGAGGTGAGTCTCGAAACGGGGGCGAGTTCTCATACCCCCCC
CTCCCCCCCCCGCCGTCATGTTTGTGATTGGGGGGTGGGGTAGCAAATGT
GCGTCCGCGACGGTGCCCCGCGGTGCCTGTACTGTGTTGGTGTTTTTGGA
TCTTGACGCGCCTACACAATCAGAACGAAGAAGTTTTTTATTTTTCACTG
GAATACATAACGTGGTACATCTTTCGCCCCGAAGCAGCGTAGACCGTGGG
GGTGTGTTGAGATTTGTGATGAGTGAAAGCCGTTTGTTGCTCTGCGGAGC
GCGCGGGGGCGGCGTCCAGATGTGTCACACCAGTGGTCACGCCTTTAGCC
TGCTTGTCCCGTTGCTGCACGAAACGTTCCCCGGAGCAACGCGTGCAAGG
AGAGGCCGTTCTTCGGTAGACCCTTGACCAACCTTGCCGTCTCATCCTCA
CAACACACTACACCCGAATCCCCCACCGGCGGAACCCCGTCCTCCAATGC
ATGGGCAATCGGAAACATCCTGCTAAGACATGTGATGGTCAGCCTCTGTT
TCATACTTGTGAAACGTACCGCGGGCCGGCGAAAACCCGTCATGTCGCTC
CGTCCCGGCATGCGAGGTCAATGGTCTAACTATCGACTACGGCATGCGCT
TACATGAGCACCACCCCTCCCACATATCTTACTGCCCCGCCGGACCCCCG
CTTCCCACCGCCCCGATTGTGTTGTTCATCCAGGCAATAGAGCTGGACCC
ATCGAGCTACATCTACCGCTCCAACCGGAGCGCGTGCTACGCTCTGCAGG
GGAAGCATGAGATGGCCAAGGAGGAAGCGGAAGCGTGCATCAAAATCAAC
CCGGACTTCACCAAGGGTTACTATCGGTGAGTGATGAGTCGTGTCGGTGG
TGGTGTTAAGTATCATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGCTGCTGTTTCTGCTGCTGCTGCTGCTGGTGTTGGTGCTGGCGGTTGT
CCCTATTGTTGTTGTGTGTTTTGTCGTCGTTGTTGTCCTTCTCGCCAAGA
GCCAACAGCGATGATGATGCCCTCCAAGTCACATTCGGGCTTTGTATTTG
AATCGAATCCCGCTGCGTTCCTTGCCCAACCGATCGGTCTGCGATATGCC
TACGGTAGCACACACACCCTCCCCACCCGTTCACAACGGTGGGTATCCTC
TCCCGATATGGGGTTCCCCTCTCGCCGATCGGTCCTGTGGGAACAACGCT
CCGTCCTCTCGAGGTCGCGTGGTCAATGGTCTAACAGCTAAGGCATGCGA
AACATGAGAGTACCCCCCCCCCTCCCCCCCTCCCGGCGCCGTCTTGTTAG
GAGGTTAGGACACACCCGTGTGTCCTGAGGGCATCTACCGCGCTGCCGTG
TCTTGCCTGACTCGATGTTTATCTTTGCTGGTTTGTTAACCGTGTTTGCT
GGGACCGTTTATTCGGTTGGTGGCCGGTGGTCAGATTGGCGACGGCTCAG
ACCGAAATGGGGGAGATAGACGCCGCGCTCGAGACGGTGAAGGCCGGCCT
AGGGAGGGATCCAAGTGAGACAGACACACCAACCGTCGTCCCCCTATGTG
CCGTTGATGTTGTCGTTGTTCCTCTCCAACAGAGCGAGAATAGGTGGAAA
GCGTGTATGTATGTAGCTCGTTCCAAGACACGGGCTCGTTCAAGACACAG
GTCTCTGGGGTGTTGTATCTCGCGGGAAGAATGTGGGGGAGTATGCTCGG
TGGGCGTCTCACGACCACGTCGCCCCCACCCCCCCAGGGTAGGGTAAGCC
CTCGCGAAATCTGTCGAAAATGGCAACGTTGTTCTCTGCTGTCATGGAAT
GCTCGCCCCACAACGTTGTCGGTGCAGGCGGTCCAGGCATCACAAGAGTT
TTTTTCTTTGATGTAGAGGAAAGGCCGCCTACAATATTGTGGGTGTGGGT
GGGTGCGTATCAGGGCTACGGACAGCAGTGCACCCATCCTCTCGGGGAGA
GGGATGTGTACCCAAGTTGCTCCACCGGCGGAGTAACCTCTTACTTGCTC
CGCCAGGAAGATCTCCGCCCACAGAGCTCCAATCGACGTCAAACCATTTT
GCATTGTGTAGGTATTGGCTACCCAGCAAGCACTTGGATGGTGAATCGGA
CCAGTGGCTCCGCAGCACCCCAGGAAGTCTTGATCCTGTCGTAACCCCGT
CCACACAGCTCAAATTGACCCCACCCGTTATGTCTCATGTTTCATCGATA
CATATCTGTCATACACGATATCGGACACCCCCATCCGATATGTTCGTTCA
GAAAATATGGTTAACAGAGGGGGTTCAGCAGCATCTAGCGGGGGGTAAAC
GACATTAGGCAACCAAGCTAAAGAGGATTACCCCCATATTGGGTTTTCGT
CGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTTCGTGAACTCGGC
AACCAGGTTACCGTTTTTTTTTTTTACCTCGGTTTTTTTTTTGGCGGTAA
CCATGAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTCGAGAACCCTCA
CTCCGCGCAACGGGGGATGATCGCACCACGTTGTGTTAAAATGGTCAAGC
ACCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTGAAAGC
ACCAGAAAATAAATTAAGTCATACGTAGCTGTCATCCGTACGCAAGGAAG
TAAGCAGAAGATGCCGAACACCCTTAGCAGGATGCAGCTCACCCTTCATG
CGACTCGCCAAATACCTCACGGTGCTTCGCGCTTGGTGATGTGAGAGCCT
GGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAG
GTCAATGGTCAAACGACTACGGCATGCACGACTATGAGTACACCCCCCCA
TAAAGGGGATAATCGCGCCACGTTGTGTTAAATTGGTCAAGCACCCTCGA
GGCTGTTACACAGCAGTGCTTACAACTGTCTCTGGAAGTGAAAGCACCAG
AAAATAAATTAAGTCATATGCAGCTGTCATCCGTACGCAAGGAAGTGAGC
ACAAGATGCCGAACACCCTTAGCAGCATGCAGCGCACCCTTCATGCGACT
CGCTGAATACCTCACGGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCC
GGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGCAAGGATGAGATGTCAG
TGGTCTAACGACTAAATAATACGGCATGCACGACAATGAGTACACCCCCT
CCCCCCCCCATTTCTACTGACTCTCCCCCCCCCGCTGGGCCTCCGTCCCG
GTAACGCCGCGGCGACGCAGAGAACGGTGACTTGCTCCGACAGAAGCGCT
CCCTCATGACAAAAAAAACGGCGGCTTCCTCCAAGGCGCAACGGGGCGGC
GGCGGCGGCGGCGGCGGGCCTGGGGGCGGTCGGATCGACCCGCAAGTTAT
CCAAGAGGTACTGCATGTGTAAGACTACTGCGTACCACGATTTATTTTTT
GGTTGGTTGGTTCGCTAAGGTTCGCTGGACTGTTCGAGTGAAGAACGCGT
CCAGCTATGTGAGCTGTTTTATTGAGCTTGGGAAACGTCGCAACTGGCAG
CCGGCGGCCAAGCTGTGGGCTGGGTCTGGTACTGCTTGCATGGACAAAAA
AAGCAACCACATTCGTCCTATAAGCACGACCTTCTGATGGGGAGTCTCGT
CGTCGATGCTCCCGGCATTTTCGTCCGGTCTGTGGCCCAGTAGCTTCACT
CTTAAAAGCTCTTTGTAAGTTACCGCCCCCCGTGCGACAACCCGAACCCA
TGACCGAGGAAAGTTCCAAGAGCTCTCGGTGCAGCTGGGGCTAACGAAGA
GGGAACTTGCGGAGGTTGAAGCGCAGCTGCAGGCAACCCTCCGGGAGAAG
AAGCGGGGGGTGCTCACGAGGGGGGAGCTGGACAGGGTGGAAGACGGAAC
GCCAATGTACCAGAGCGTGGGTGAGTTAACCGGTAGGCGGCTACTGTAAC
AGTGACGAACGTTGGCAAGGAGTTAGCTACTCCTTTGTGTTTTTTTTTCT
CGTTTTTGAAGAAGGGAGCAGGTGTGTTATTGTCGCTATGTGTTGGAGGG
GGGGGGGGGGTACTCATAGTCGTGCATGCCGTACTCGTGAAGCCATTGAC
CTCGCATCCCTACGGCCTTGGACGGAGCGATATTCCGGGTTTTCGCTGGC
CCACGCTGCGGTCCAAAGGATGAACCAGCGTGGGGTATGAAGGAATGCGC
CCTTTGCCGGCATGCACTATCAGATACCGCTCTGTCTAGGTGATTTCCCC
ACTCTGTTCGTGTCAACGCGTTTTGTCAAGTTAAAACCTCAAACCACGTT
GTGTAGGATAGCGTTCCCGCGGCATTGTGGAGGTACGATATCTACCGTGC
TCTCGGGAATCGGACACCCCGGTGTATCCAACGGGGTCGTTGACTTTGTC
ATTCTCGTGCACCGCTTCCAAATATTATCCTGCCGCTGCTTATGGCCAGG
GAAAATGTTCTTGTCGCAAACAAAGGAGGAGGTCACGGCTCTGTTGGACG
CACAGCAGGAGGACAAGAACAAGTCGGAGACACAGCTGCAGGTAGCCAAC
AAATGCACTCCACTGCTGTTTTGGTTGAGTGTGTTGCCTGCACCCACCGT
CGTTACTTGTTGTCGTTGTTGTCGTTGTCGTTGTCGTCCTCGTCCTCGTC
CTCGTCCTCGTCATTGTTGTTGTTGCGTCTCGCATTCGCTCGTTGTCCCA
TAACTATCTAGTACGGGACTAGGCACAAGAAACTTCGAGGTGGGGCCGCC
GCCGCCGCTGGCAGCGGTGAGGCTGGGCTGTTGCGACACTCTTGCCTTAC
CTGTTCCTGAATGTTTTTGAGTAGAATCCCCACCAGCACCCAATTTTTCA
TTTCAATATTTCTGTCATCGTATGCATAGCCCCCTTGCTCTCTCGCTTCG
TTTACAAGAGCCGGAGAGATGGCACACCGCCTAGGCCGACTTTCAAAGTT
CGAATACTCCACGACCAAGATTGTCCTTACCGTACCGTATACCGTACCGT
GGTATTCCGTAAGAGGCGGAGAGATGTCACCCCCATAGGCAAAGCTCGAT
TGCTCCACAACCAAGGGGGTGCGGAAAAAAGTCCGTTAATTCTACGGAAA
GCCCTCGATGAGGATGTTTCCAGCAAGCACAAATGTTGGTGTTGGCACAG
TCTTGGTGTGTGGAGCAATCGAGTTTTGGAAGTCGGTCTAGAGGTGGCGC
TATCTCTCCACCTCCTACGGAAACATTTTCCGGCATGGTTTGTTTGTGTT
TCTTCTTGTCACACGGTCATTGGTGATCCCATGCCCCCCCTTTCGCTCCT
CTTCGTCCGCGTGGCCCCCTGTTTCACCTGGCTCTCTCTCTCTCTCTCTC
TCTCTCTCGTCTATGTACGCAGTCCAAGCAGTCGTACCTCGAGAAGCGGT
TGGCGTCGGAGCAGAGCAATCTCAACGAGATCATCAAGAATATCCAGGCT
CAGGGATAGAACGAAGAAGGGTCATGCATCTCGTAAGGATATAGGCGCAC
TCCCAGCGAGCCCACATCAATCAAGAACATTCAGACTCAGGGATAATAGG
AAGAGGGACGTCCCCACGACACCATCAAGAACATCCAGGCTTTAGGAAGG
CACAGGTCGTAAGGCGGATAGACGCGATACCCAGGAGGCCATCAAGAACG
CCCGCAGGCTCTTGGATAGTAGCAAGAGGGTAGGGTCGTAAAGGCGGAGG
AGAGACGCGCCCCCGATGAGACCATGAAGTCAAGGCCATCCTGGGTTCCG
GGATGCGTTGCCACCCGAAGGCCCGTGCGGCGTAGGCAATTACTCTCAAC
ATCCATCCATCGGCGAGATGGAGAGACAAGCACCGGCGGGCATCAGGACA
ACACAATTTTGGAAAGCTAGCTTTTGTGTGCTCAGAGAGCGACGATGGCG
TTTTTTTCTTCTTCTCTGGACTAACGTGTCGGGGTAGGAGGGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1038521..1046417-

>mRNA_Ecto-sp6_S_contig10.519.1 ID=mRNA_Ecto-sp6_S_contig10.519.1|Name=mRNA_Ecto-sp6_S_contig10.519.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1038521..1046417- (Ectocarpus species6 EcLAC_371)
ATGGGTGTCAGCGAAGAGAACAAGGCCATTGCCGAGGCGAAGAAAAAGGC
GGGCAATGATGCGTTTGCCAAGAAAGATCTCGACGAGGCTGTACGCCTCT
ATTCTGAGGCAATAGAGCTGGACCCATCGAGCTACATCTACCGCTCCAAC
CGGAGCGCGTGCTACGCTCTGCAGGGGAAGCATGAGATGGCCAAGGAGGA
AGCGGAAGCGTGCATCAAAATCAACCCGGACTTCACCAAGGGTTACTATC
GATTGGCGACGGCTCAGACCGAAATGGGGGAGATAGACGCCGCGCTCGAG
ACGGTGAAGGCCGGCCTAGGGAGGGATCCAAAGAACGGTGACTTGCTCCG
ACAGAAGCGCTCCCTCATGACAAAAAAAACGGCGGCTTCCTCCAAGGCGC
AACGGGGCGGCGGCGGCGGCGGCGGCGGGCCTGGGGGCGGTCGGATCGAC
CCGCAAGTTATCCAAGAGTTCCAAGAGCTCTCGGTGCAGCTGGGGCTAAC
GAAGAGGGAACTTGCGGAGGTTGAAGCGCAGCTGCAGGCAACCCTCCGGG
AGAAGAAGCGGGGGGTGCTCACGAGGGGGGAGCTGGACAGGGTGGAAGAC
GGAACGCCAATGTACCAGAGCGTGGGGAAAATGTTCTTGTCGCAAACAAA
GGAGGAGGTCACGGCTCTGTTGGACGCACAGCAGGAGGACAAGAACAAGT
CGGAGACACAGCTGCAGTCCAAGCAGTCGTACCTCGAGAAGCGGTTGGCG
TCGGAGCAGAGCAATCTCAACGAGATCATCAAGAATATCCAGGCTCAGGG
ATAG
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