mRNA_Ecto-sp6_S_contig10.518.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: D8LSQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ3_ECTSI) HSP 1 Score: 1066 bits (2757), Expect = 0.000e+0 Identity = 607/688 (88.23%), Postives = 616/688 (89.53%), Query Frame = 1 Query: 1 MQQRRSLPPTSSTGRRGRQPQTPRSRPLCTWEVLGVATLLVLTIVNVCTYSERRAKFQLAHGGALHTSDDDNGLPEHSLRAPAPQGKVSERTGGSEGGAGPDTYVASVGRPGGNVDASGTKRPDAVGGAVGGGDGRSRGDAGEETVVGSGGWKWTNKTTGPVRPXXXXXXXXXXXXXXXXNPLGRDAPLQVAVMRSANDAGGGSSGTGMNSWRWPSDVGAGSGGSIGGVSEAESAVGHFPCSLTEADDAPGPGHRGXXXXXXXXXXXXXXXXRLKPWSTSGPCVVSCSXXXXXXXXXXXXXXXGARQLVEARGPEDRIGGGGLAVTPIGXXXXXXXXXXXLERCERAARACNLYQECTHVLLPLGGXXXXXHSSGSGNRSGDKRNGGGFAVLMHRAAGDGSMDGVEAXXXXXXXXXXXXXX-NGWSGPRGGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGKGKDFRGYDFPEGDFPSEGTAVHDVDNYRVVLVFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXX-AVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTSAERGEPFTLAVRERLRRKHASLSKKVFESPAVAIV 2058
MQQRRSLPP+SSTGRRGRQPQTPRS PLCTWEVLGVATLLVLTIVNVCTYSERRAKFQLAHGG LHTSDDDNGLPEHSLR PAPQGKVSERTGGSEGGAGPD YVASVGRPGGNVDASGTKRPDAVGG EET+VGSGGWKWTNKTTGPVRP XXXXXXXXXXXXX PLGRDAPLQVAV+R AN+AGGGSSGTGMNSWRWPSDVGAGSGGSIGGVSEAESAVGHFPCSLTEADDAPGPGHRGXXXXXXXXXXXX RLKPWSTSGPCVVSCS XXXXXXXX GARQLVEARGPEDRIG XXXXXXXXXX LERCERAARACNLYQECTHV+LPLGG HSSGSGNRSGDKRNGGGFAVLMHRAA DGSMDGVEA XXXXX NGWSGPRGGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGG+GKDFRGYDFPEGDFPSEGTAVHDVDNYRVVL+FKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPA A+KKE+RNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTSAERGEPFTLAVRERLRRKHASLSKKVFESPAVAIV
Sbjct: 1 MQQRRSLPPSSSTGRRGRQPQTPRSHPLCTWEVLGVATLLVLTIVNVCTYSERRAKFQLAHGGVLHTSDDDNGLPEHSLRPPAPQGKVSERTGGSEGGAGPDIYVASVGRPGGNVDASGTKRPDAVGGXXXXXXXXXXXXXXEETMVGSGGWKWTNKTTGPVRPLSXXXXXXXXXXXXXPTPLGRDAPLQVAVLRPANEAGGGSSGTGMNSWRWPSDVGAGSGGSIGGVSEAESAVGHFPCSLTEADDAPGPGHRGXXXXXXXXXXXXQ---RLKPWSTSGPCVVSCSPXXXXXXXXS-----GARQLVEARGPEDRIGXXXXXXXXXXXXXXXXXXXXGLERCERAARACNLYQECTHVMLPLGGGGGDGHSSGSGNRSGDKRNGGGFAVLMHRAARDGSMDGVEAAAXXXXXVSHAAGAGNGWSGPRGGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGRGKDFRGYDFPEGDFPSEGTAVHDVDNYRVVLIFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPATVAGAGAGASGAIKKERRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTSAERGEPFTLAVRERLRRKHASLSKKVFESPAVAIV 680
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: A0A7S4A8H3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8H3_9STRA) HSP 1 Score: 188 bits (477), Expect = 3.720e-49 Identity = 108/252 (42.86%), Postives = 148/252 (58.73%), Query Frame = 1 Query: 1306 KPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGKGKDFRGYDFPEGD-FPSEGTAVHDVDNYRVVLVFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTSA-ERGEPFTLAVRERLRRKHASLSKKVFESPAVAI 2055
KPRTY VVS+GG GSKML GWL++ + K V+H HD RP D L S + +DFR FP G F +E V D+D+YRV+ +FKDP EA+VSR+ Y HCK+L G CG FP L+ YA++ DR+ + AF++ Y +P + YP+V +NYHK+W N+EA++ ALGLPA AS P RTETVRND T+A E + + A R L R + + +++ PAV++
Sbjct: 215 KPRTYIVVSYGGCGSKMLAGWLAQLPRKYAKHVYHFHDKRPPDILRELPPPPRPST-----RERDFRARRFPGGGRFRTETKPVADLDDYRVLYIFKDPVEAMVSRFGYGHCKHLDGD-CG-VEQSFPKLDVYAQQGVDRMGLLAFFEAYTSP-----------------QKYPIVALNYHKLWQNREAVMSALGLPASLASSFPERTETVRNDLTAAGENNQAHSEATRRGLDRMYGRILERIRALPAVSV 442
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: A0A7S3NGV2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGV2_9STRA) HSP 1 Score: 167 bits (423), Expect = 2.650e-41 Identity = 105/277 (37.91%), Postives = 147/277 (53.07%), Query Frame = 1 Query: 1306 KPRTYYVVSFGGSGSKMLGGWLS--ERGKGM--------------------VKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGKGKDFRGYDFPEGD-FPSEGTAVHD--VDNYRVVLVFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTS-AERGEPFTLAVRERLRRKHASLSKKVFESPAVAIV 2058
KPRTY V+S+GG GSKML GWLS E + VK V+H+HD P L R KDFR FP G F S+ + + +D+YR++ +FKDP EALVSRY Y HC +L G CG+ FP L++YA D +++ +F+ NY P R++P++ +NYHK+WDN +AL+ ALGLP AS P RTETVRND T+ AE + + A R+ L + + + +++ + PAV +V
Sbjct: 231 KPRTYVVISYGGCGSKMLAGWLSSLEAQSAVKRPSRKQQPITKKSATFPKYVKRVYHLHDAHPPLTLRELPPPRAPPT-----NQKDFRARRFPGGGHFRSDTPLIPESSLDDYRLLFIFKDPVEALVSRYGYGHCLHL-GGNCGTNERTFPKLDAYARRGIDNMNILSFFKNYVTP--------------NPNRSFPIILLNYHKLWDNLDALMAALGLPPQLASTFPQRTETVRNDLTAQAEGNQAHSEATRQYLDKIYDPIIQRIRDLPAVTVV 487
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: A0A7S2DQ38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQ38_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.110e-38 Identity = 92/234 (39.32%), Postives = 130/234 (55.56%), Query Frame = 1 Query: 1363 GWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGKGKDFRGYDFPEGD-FPSEGTAVHDVDNYRVVLVFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTSAERGEP-FTLAVRERLRRKHASLSKKVFESPAVAIV 2058
G+LS+ K V+HIHD P KL ++ + G G DFR FP G F + V D++ YRVV ++KDP EALVSRY + HC +++G CG A +P L+ YA++ DR+ ++ ++ + +P +E R +P+V +NYH++WDN A++ ALGLPA AS P RTETVRND T G T R L+R +A L +V +PAV IV
Sbjct: 2 GFLSQLPKAHKTYVYHIHDRSP-PKLLRQMPKPPPPTIRSG--GNDFRSGRFPGGSKFKRDTEPVDDLNEYRVVYMYKDPVEALVSRYGWGHCNHIQGD-CGDAEAQWPKLDKYAKKQVDRMRLKDHFNAFHHP--------------EEPREFPIVAINYHRLWDNIPAVLTALGLPASLASTFPPRTETVRNDMTGKSEGNAAHTEETRSGLKRMYAELQTEVLSNPAVLIV 217
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: A0A7S2RTZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTZ4_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.310e-27 Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 1498 DFRGYDFPEGD-FPSEGTAV--HDVDNYRVVLVFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTS 1953
D+R FP G F ++ + D+D YRV+ ++KDP EALVSRY Y HC +++G CG + +P L+ YA DR+ + A + NY +P+ E R++PVV VNYHK+WDN AL++ALGLP P RTETVRND T+
Sbjct: 1 DYRTGRFPGGGRFKTDSPRIPSSDLDKYRVLYIYKDPIEALVSRYGYGHCMHIQGD-CGEERS-WPKLDKYAAAQQDRMKLMAHFQNYMHPS--------------EMRSFPVVAVNYHKLWDNLPALMQALGLPDELIKTFPPRTETVRNDLTA 139
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: A0A7S0TAQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TAQ6_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.370e-27 Identity = 62/142 (43.66%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 1495 KDFRGYDFPEGD-FPSEGTAVHDVDNYRVVLVFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLP 1917
KDFR FP G F + V D+D +RV+ +FKDP EALVSRY Y HC +L G CG A FP L++YA DR+ + +F+D Y +P R++PV+ +NYHK+WDN AL++ALGLP A P
Sbjct: 18 KDFRARRFPGGGRFRDDTPPVRDLDAFRVLFIFKDPVEALVSRYGYGHCLHL-GGDCGPNEAAFPKLDAYAASGRDRMGILSFFDAYVDPPP--------------SRSFPVLLLNYHKLWDNLPALMRALGLPPDAARSFP 144
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: A0A7S2CP49_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP49_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 4.310e-21 Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 1627 YNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTS-AERGEPFTLAVRERLRRKHASLSKKVFESPAVAIV 2058
+ HC +++G CG + A FP L+ YA+ DR+ + ++ + P+ RNYPVV +NYHK+WDN A+++A GLP K P RTETVRND T AE T R L+R ++++ + +PAV +V
Sbjct: 1 HGHCTHIQGD-CGPSDAQFPKLDKYADMGQDRMRLNDHFNAFMRPSTP--------------RNYPVVAINYHKLWDNLPAVMEAFGLPQEFVQKFPPRTETVRNDLTGKAEGNAAHTEKTRNGLKRMYSTILDDIRNNPAVRVV 130
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: F2UND3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UND3_SALR5) HSP 1 Score: 102 bits (253), Expect = 5.940e-20 Identity = 66/225 (29.33%), Postives = 105/225 (46.67%), Query Frame = 1 Query: 1291 FTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGKGKDFRGYDFPEGDFPSEGTAVHDVDNYRVVLVFKDPAEALVSRYFY----NHCKNLRGAR--CGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDR 1947
F D +P ++V+S+GGSGSK +L + GK +HIHDP P ++L +A + P+ D+ +RV++ +DP EA S NHC+N+ ++ C + P S E Y + D + + FY + +P K +QRNY +V +N+HKMWD+KE +++ALGLP + PT + +R
Sbjct: 98 FRADQRPVHFFVISYGGSGSKTFWHFLRKYGKS-----YHIHDPHPVEELHMPAPTHTDTA------------MSVSKHKIPTA-----DLHLFRVIVQVRDPCEAACSHLHLGLNKNHCRNMLNSKSHCLNGPQ---SYEEYVQRGEDHIGFDRFYQAWMDPE------------KAKQRNYNIVILNFHKMWDHKEEVIRALGLPPSAINDFPTSSAASEEER 285
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: A0A2D6LX15_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D6LX15_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 1.240e-10 Identity = 55/209 (26.32%), Postives = 84/209 (40.19%), Query Frame = 1 Query: 1303 AKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGKGKDFRGYDFPEGDFPSEGTAVHDVDNYRVVLVFKDPAEALVSRYFYN--HCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTR 1923
A + Y+V S+GG S L +L G +HIH RP + L V+R+ V Y E + + D NY V+ +F PA ++ SR ++ H +++ R S E Y D + E+F+ NY + RNY ++ VN HK+W++ E+ LP E K P R
Sbjct: 4 AGAKRYFVCSYGGCASWTLRRFLQHYGT-----AYHIHSCRPPEFLTLPVSRKPVHR---------LFNYGVKEHFGSARKDRIRDTSNYSVIYLFVKPAYSIFSRKAFSQRHLRSIGVERKNLRKLRKLSREEYITSGEDLIDYESFFHNY--------------VTRGINRNYDIIAVNVHKLWNDLESFFTLTDLPLSELEKFPQR 184
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Match: A0A6C0AUF0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AUF0_9ZZZZ) HSP 1 Score: 62.8 bits (151), Expect = 1.600e-7 Identity = 58/211 (27.49%), Postives = 89/211 (42.18%), Query Frame = 1 Query: 1312 RTYYVVSFGGSGSKMLGGWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGKGKD-----FRGYDFPEGDFPSEGTAVHDVDNYRVVLVFKDPAEALVSRY--FYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPAAXXXXXXXXXAVKKEQRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTR 1923
+T+YV SFGGSGS +L L G+ V HIH P +L G KG D F G PE +++++ V+ +++DP +A+ SRY +Y C + R T + L++ + D + FY+NY K E+RNY + CV Y M++ + L LG+ K T+
Sbjct: 2 KTFYVCSFGGSGSTLLANSLKPYGR-----VEHIHSRIPPLELEYI----------GNNKGGDTYYEWFNGIKVPE----------NELNDINVIFIYRDPIKAIYSRYIPYYEDC-HKRHMDHVQTNRNI-ELKNVLSQKKDLFGITEFYNNY--------------TTKNEKRNYKIHCVRYEDMFERQNELCDLLGVGPLHLHKKETK 171 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.518.1 >prot_Ecto-sp6_S_contig10.518.1 ID=prot_Ecto-sp6_S_contig10.518.1|Name=mRNA_Ecto-sp6_S_contig10.518.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=687bp MQQRRSLPPTSSTGRRGRQPQTPRSRPLCTWEVLGVATLLVLTIVNVCTYback to top mRNA from alignment at Ecto-sp6_S_contig10:1026765..1035902+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.518.1 ID=mRNA_Ecto-sp6_S_contig10.518.1|Name=mRNA_Ecto-sp6_S_contig10.518.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=9138bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1026765..1035902+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1026765..1035902+ >mRNA_Ecto-sp6_S_contig10.518.1 ID=mRNA_Ecto-sp6_S_contig10.518.1|Name=mRNA_Ecto-sp6_S_contig10.518.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2061bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1026765..1035902+ (Ectocarpus species6 EcLAC_371)back to top |