Homology
BLAST of mRNA_Ecto-sp6_S_contig10.517.1 vs. uniprot
Match: D8LSQ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ4_ECTSI) HSP 1 Score: 369 bits (946), Expect = 6.680e-123 Identity = 248/361 (68.70%), Postives = 251/361 (69.53%), Query Frame = 1 Query: 262 MSLAQSAVQGTXXXXXXXXXXXXXXXXVPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPLPVRRSTAVNSAXXXXXXXXXXXXXXXXETFLFSNSTATSYSDTSTYDYCDSGDALCGTDDLCQECQSLTTSGGSLTCREAYPAAAASGDSSACEQLAATFCCYYGDASTAQRCLGNKPTALYWECVLTGAAFGCSLEDMPCYS----AAQTQPIPSPSPTEAATMAPVQFGSGGEMESVFTASPTGAPTTFDRGSSLAGTASPTPAAPIASEDGDGGEAPAATRSPVAGNDDTGSGGIGAGSGFNSAXXXXXXXXXXXXXXXXXXXXXXXXWSTATAVPRAVVTLGVTLFLAARHSAAK 1332
MSLAQSAVQGT XXXXXXX VPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEP PVRRS AXXXXXXXXXXXXXXXXE FLFSNST TSYSDTSTYDYCDSGDA CGTDDLCQECQSLTTSGGSLTCREAYPAAAASG+SSACEQLAATFCCYYGDASTAQRCLGN+PTALYWECVLTG AFGCSLEDMPCYS AAQTQP GEAPAATRSPVAGNDDTGSGGIGAGSGFNSA WSTATAVPRAVVTLGVTLFLAARH+AAK
Sbjct: 1 MSLAQSAVQGTTTEAXXXXXXX-----VPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPFPVRRS-----AXXXXXXXXXXXXXXXXEAFLFSNSTDTSYSDTSTYDYCDSGDAWCGTDDLCQECQSLTTSGGSLTCREAYPAAAASGNSSACEQLAATFCCYYGDASTAQRCLGNEPTALYWECVLTGPAFGCSLEDMPCYSGNSSAAQTQPXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------GEAPAATRSPVAGNDDTGSGGIGAGSGFNSAGTSSGGGDFDGAAEEAGDGAARVAWSTATAVPRAVVTLGVTLFLAARHAAAK 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.517.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match Name | E-value | Identity | Description | |
D8LSQ4_ECTSI | 6.680e-123 | 68.70 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 0 |
Model size | 1335 |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-15_003010.1 |
Cds size | 1335 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1682348704.651927-CDS-Ecto-sp6_S_contig10:1016960..1017046 | 1682348704.651927-CDS-Ecto-sp6_S_contig10:1016960..1017046 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 1016961..1017046 + |
1682348704.6613762-CDS-Ecto-sp6_S_contig10:1020074..1020807 | 1682348704.6613762-CDS-Ecto-sp6_S_contig10:1020074..1020807 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 1020075..1020807 + |
1682348704.6709144-CDS-Ecto-sp6_S_contig10:1021153..1021669 | 1682348704.6709144-CDS-Ecto-sp6_S_contig10:1021153..1021669 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 1021154..1021669 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.517.1 >prot_Ecto-sp6_S_contig10.517.1 ID=prot_Ecto-sp6_S_contig10.517.1|Name=mRNA_Ecto-sp6_S_contig10.517.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=445bp
SNCCAGSGCFRASQLCIYHFFCGWRETVRSREIEAERPAMGSGAERSTAT TAPHRQRSWGPAAAATSMWRGADSLLLLTLLLTTRPTMSLAQSAVQGTTT EAYSSSSSSSSSSDVPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPLP VRRSTAVNSAAAAYNDDDGEALGHDDETFLFSNSTATSYSDTSTYDYCDS GDALCGTDDLCQECQSLTTSGGSLTCREAYPAAAASGDSSACEQLAATFC CYYGDASTAQRCLGNKPTALYWECVLTGAAFGCSLEDMPCYSAAQTQPIP SPSPTEAATMAPVQFGSGGEMESVFTASPTGAPTTFDRGSSLAGTASPTP AAPIASEDGDGGEAPAATRSPVAGNDDTGSGGIGAGSGFNSAGTSSGGGD FDGAAEGAGDGAARVAWSTATAVPRAVVTLGVTLFLAARHSAAK* back to topmRNA from alignment at Ecto-sp6_S_contig10:1016961..1021669+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig10.517.1 ID=mRNA_Ecto-sp6_S_contig10.517.1|Name=mRNA_Ecto-sp6_S_contig10.517.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4709bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1016961..1021669+ (Ectocarpus species6 EcLAC_371) AGTAACTGCTGCGCGGGATCGGGTTGCTTTCGGGCCTCTCAGCTGTGTAT
ATATCATTTCTTCTGTGGCTGGAGAGAGACTGTAAGGTGAGAACACCGCT
CAGCGTTTGCGGCCAACTGCCGTCGATGTCGCTTCAGCTACCGCTTGGTG
CAACACCGAACGAATAGCCGTTGGCGGTCATTGGTCGTGCCTCTGACTAT
TGTGTATTTTAGTCGTATCTTCGCTGCTGGGCACATGGATGTGCAGGAGA
GCTCGTACGGAAGGTTGCTAACTCCAGCGGCTCATGTGGCATCATCGCCA
CTGAATTTCGTTTGCACACGAAGCGCGCTGTCCATGCTCTGCCGCAGGCC
ACGCTACTACTGTTGTTGGAAAAAAGGAAAGGTGCATCATCATGTGTTGT
GTTTGTTCGAATTTTCGTGGGAAAAGCCGGCCTCGTTGTGTCTGTGATCG
GTAGCACCGGCCGTGAGTGAACTTCACCTCTTTAGCGCTTCAATCCGCCG
TGCTAACGTGATGTTGTAAGAGAGTCAACAACGGTGGGGTCAAGCATTTT
CCAGAAGCTTTGCCGCTTTGTGCCACAACAGCTGAATATCGTCCAGCGTC
ATCTACTACTGCTGTATGCAAAAAGTCGCCGTTGGTCTTATTTTTCGGTG
TGCTGGTCGTGCGTGTGGTCGTGCGTGTCCATTTACAGCCCTGCAGCTAC
AGCAGTAGCTGGCAGGGGCAATTTACGCGCTAGATGTTTCGCCCCCCGCA
CAACATTATGAGCCGTGTGCGGCTCACCATCCTGCATCTCTGTCCACACA
AACCGTCTCCGAGTGGCTCCTCGAGATGTTTTTTCAACAAAAGTGTGGCC
TGCTTTGTGTGGTCGTGTCGGATCGTTCACGTATGTAGTAAAATACCGAA
CAGAGGTGATAGCCACCAACAACATATGCCGACGACTCACAGACGACGCG
TTACTGCTGTATCGAAATTGGTTGCCAAACACGTTGCTCCACAGACGCGA
AACTATTCTTCGTTGTAACATACATAGACCTACAGTAGATGACTGCTGCA
CACAGCAATATGTTCTCTCTCACTCTTAGAGTAGCCCACGTGCTGCTCGG
CTTTTTGGTGTTCTTGTGGTTGGAGCGAGATGCACAATCTCATTCATACG
TCTTGCCCATACCAATGTACTGTGTAGACGAAACGGTAAACTGAATTACA
AGCCAGGAGAAAGAAGGCTGTACAACTGCTGGATGTACTGCTTTTACCAA
ACGGTAACCATGTACCCATCATATGAGCAACAGGAAGAGCTTGACACACC
TACCTGCAGACTCCTATTATTCCGTCTTTATGTTTGTTGAAGCAAAGTCC
GAGGGATGGATGATGGATGATGCAGCATCGTAATTCCAAGCGTGACAGCG
CTCTTTGGCGCCTTGAAACGTCTGGCTACAGCTGGTTTAAGGCCGTCTTC
TTGTCATCCTGGCACCGACCGCCTTTAACACTGGGGATTCTATATTGGAA
GAGTGGCATGACAGACGACCCTTGAAATAATTTTCTTCCGAGTTTGGAGC
GGTGTTGTCGTGCAGGGCGCCTCTCTCTCTCGACGAACGATTACACACAG
CAGATAGATGGCAAACGTACCTAAAGAAGGTCGGGGGGTGATTTTTTTTT
TTTTATGTATTGCCAAACGAAACGGAACATCAGGCAAACAATATATATCT
ATGCATACACACACAGAAAGACTTTTGTTGTTGTTGTTGGCTTCACATTA
AATTCTTAAGGAATAATAAAAACACACACAGAAAGACTACCCATTCGAGA
TATACCCACAGTCGAACGGGATGTGGTGGAGTCTTTTCAGTGAGTGGAGG
GAAACCGGCTGGGTACTGGACTTATTTCGAGTCTTTTTAAGTCTATACAC
TGATGATTTATACCAGTGATGCCAGCTGGTGCTAAGTACAAAAACATCTG
TATAGGTAACTTACATTTTACAATACATCCCCTGTAGTTCTCTACTGGGT
CAACGACAAAATATCGGGGAGAAGCCCTCCGTTGTGCCGTGTATTGTAAG
TTGTAACCTTCACAGGGGACACGGCGCAGTGTCTATTGACAGCTTGCTGG
TTTATTAGACATATTAGGAATAACATTGTAAAATTCATGGAAGGTGGAAC
AAAATCTACAGCAGTACATCATCAGCTCTACATCACTCGTTTTTCAAATC
TACAGATTTTTGAATTTCACGGACAGCAGCAGGTGTTTCCCGCCGTTTTT
TTTAAAAATTCTTGTACAGAAGCGATATCAACCTCTACTCTACTACTGCT
GTAGTTTTTCTTTCCCAATCCTCGCAAATCCTCGCACAACCCGTAGTGAT
GACTCCGATGTGCCGAATCAGACCGTATACCCTCTGGCAGGCTCACCAGA
ATCCATGTCGGATGGTACCGTGTTTTGTGATGGACCGCCTACGCAGGATT
TCAAGAGTATCAAGAAAAAAAAAGGCGAGGGGGCACGCAGACCCCAACCC
TAACCTAACCCTTAAGCACGGATTGAATACTTTATCCCATGTGTTTGCTT
AATCAATTTTGCTCTGAGTAGACTCGTTTTCATTACTATTACGGTTGCCC
CCCTTTCCATGAAGCAGTAGTGTTTGTGATTGACAGAAACGAAATATTCA
GGATAGGGCAGAAGTGACGAACTATTTTATTTTTCGAGTGCATGCACTCT
TTGGGTAGTTGGCTTGCGAGCACGGAAGGCATTCACGTCAGTTAGACCAT
CACGGACACCATAAGGTACTGAGGGGAGACCGGTTAAAATGTGGAGACGA
CAAGGACAACAACGCACGCATATACCACACTGCCGAAGTTTCGAGCTGCA
ATAATCGTAACACAACAACATGAGGTGCCCTGTGGGTGACGGGCGGGAGA
AGACAACCTGGTTGGGTCGATCTTCAAAATCCGACTATGTATCCCGGGAG
GTGCAGGAACCGATGTTTGTACTTGCAACGTAGTTTCTTGTGTCGGAAAC
TCCGAAATTCCAACAACGGTGAATCTTGTGTGCACGATTCAAATATTCGG
CGAAGATTTCAACGTATTGCATTGCGGGTGCTGCATATGCGAACGATACT
TTTTTTCTTCGCAGGTCTCGGGAGATTGAAGCAGAGCGACCAGCAATGGG
GTCGGGAGCGGAGCGGAGCACAGCAACAACCGCGCCCCACCGGCAGCGTT
CGTGGGGGCCAGCAGCAGCAGCAACAAGCATGTGGCGAGGGGCGGATTCC
CTCCTCCTCCTGACGCTGCTGCTTACCACACGCCCCACCATGAGCTTGGC
CCAATCGGCAGTTCAAGGAACCACCACCGAAGCCTATTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCGGATGTTCCGCCAACAATGCTGACGAAGTCCGCC
ATCGCGTACAACGACGACGACGGCGACGCCCTGGGGAACGACGACGACGA
ACCGGAACCGTTCCCCGAACCGCTCCCCGTCAGGCGCAGCACCGCCGTCA
ACAGCGCCGCCGCCGCGTACAACGACGACGATGGCGAGGCGTTGGGCCAC
GACGACGAAACTTTCCTCTTCAGCAACAGCACCGCCACCAGCTACTCCGA
CACGTCCACCTACGACTACTGCGACAGCGGCGACGCCTTGTGCGGAACGG
ACGACCTCTGCCAAGAGTGTCAGTCACTCACCACCTCCGGCGGGAGCTTG
ACGTGCCGGGAGGCCTACCCCGCGGCCGCCGCGAGCGGCGACAGCAGCGC
GTGCGAGCAGCTCGCTGCCACGTTCTGCTGTTACTACGGAGACGCCTCCA
CGGCCCAGCGCTGCCTGGGCAACAAACCCACGGCCCTCTACTGGGAGGTG
GGCGCGCCCATATTTTCGAGCGGGGGGGGGGGGTGATCATGAGCGGAGGG
CGTGGCTCTCGTGAGGCTCTCAGGCTATGCTTGTTACTCGGGCGATCGAG
GTCACCTGCCCGCAAACCTGAGTCGGCTGTCTTTAGAAATTATACGTGCA
ATCAAAGAAAGACTGGTGTGCCCATTCGGGATAATACCACAGTCGAAGGG
CACGTGTTGGAGTGAATGGGATGTTTTTGCTCGGCCGAAAACATTTTGGC
ATTGCATAGCAACGTTCCGCTCGGTATTTCGGAGCTCATCCCCCCTCTCC
CTTCCGcccCCCCCGCCGCCTCCCCCCCCCAACAAAAAAATAGTGCGTCC
TCACCGGCGCCGCTTTCGGCTGCTCTCTGGAAGACATGCCGTGCTACAGC
GCCGCGCAGACCCAACCCATCCCCAGCCCGTCTCCCACAGAGGCGGCGAC
GATGGCGCCCGTGCAGTTCGGTTCCGGAGGTGAGATGGAAAGCGTCTTCA
CCGCCTCCCCAACCGGCGCGCCTACGACATTCGATCGAGGTTCGTCCTTG
GCAGGGACCGCTAGCCCAACGCCCGCTGCTCCGATCGCTTCAGAAGACGG
TGACGGCGGCGAGGCTCCGGCGGCGACTCGATCGCCGGTGGCGGGCAACG
ACGACACTGGAAGCGGCGGCATTGGTGCTGGTAGCGGCTTCAACTCGGCA
GGCACCTCGTCGGGCGGGGGCGACTTCGACGGGGCTGCGGAGGGGGCGGG
GGACGGCGCCGCTCGCGTTGCTTGGTCCACAGCAACGGCCGTGCCCCGCG
CGGTTGTTACCCTTGGCGTCACCCTTTTCCTGGCGGCGAGGCATTCTGCT
GCAAAGTAG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1016961..1021669+ >mRNA_Ecto-sp6_S_contig10.517.1 ID=mRNA_Ecto-sp6_S_contig10.517.1|Name=mRNA_Ecto-sp6_S_contig10.517.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1335bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1016961..1021669+ (Ectocarpus species6 EcLAC_371) AGTAACTGCTGCGCGGGATCGGGTTGCTTTCGGGCCTCTCAGCTGTGTAT ATATCATTTCTTCTGTGGCTGGAGAGAGACTGTAAGGTCTCGGGAGATTG AAGCAGAGCGACCAGCAATGGGGTCGGGAGCGGAGCGGAGCACAGCAACA ACCGCGCCCCACCGGCAGCGTTCGTGGGGGCCAGCAGCAGCAGCAACAAG CATGTGGCGAGGGGCGGATTCCCTCCTCCTCCTGACGCTGCTGCTTACCA CACGCCCCACCATGAGCTTGGCCCAATCGGCAGTTCAAGGAACCACCACC GAAGCCTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGATGTTCCGCC AACAATGCTGACGAAGTCCGCCATCGCGTACAACGACGACGACGGCGACG CCCTGGGGAACGACGACGACGAACCGGAACCGTTCCCCGAACCGCTCCCC GTCAGGCGCAGCACCGCCGTCAACAGCGCCGCCGCCGCGTACAACGACGA CGATGGCGAGGCGTTGGGCCACGACGACGAAACTTTCCTCTTCAGCAACA GCACCGCCACCAGCTACTCCGACACGTCCACCTACGACTACTGCGACAGC GGCGACGCCTTGTGCGGAACGGACGACCTCTGCCAAGAGTGTCAGTCACT CACCACCTCCGGCGGGAGCTTGACGTGCCGGGAGGCCTACCCCGCGGCCG CCGCGAGCGGCGACAGCAGCGCGTGCGAGCAGCTCGCTGCCACGTTCTGC TGTTACTACGGAGACGCCTCCACGGCCCAGCGCTGCCTGGGCAACAAACC CACGGCCCTCTACTGGGAGTGCGTCCTCACCGGCGCCGCTTTCGGCTGCT CTCTGGAAGACATGCCGTGCTACAGCGCCGCGCAGACCCAACCCATCCCC AGCCCGTCTCCCACAGAGGCGGCGACGATGGCGCCCGTGCAGTTCGGTTC CGGAGGTGAGATGGAAAGCGTCTTCACCGCCTCCCCAACCGGCGCGCCTA CGACATTCGATCGAGGTTCGTCCTTGGCAGGGACCGCTAGCCCAACGCCC GCTGCTCCGATCGCTTCAGAAGACGGTGACGGCGGCGAGGCTCCGGCGGC GACTCGATCGCCGGTGGCGGGCAACGACGACACTGGAAGCGGCGGCATTG GTGCTGGTAGCGGCTTCAACTCGGCAGGCACCTCGTCGGGCGGGGGCGAC TTCGACGGGGCTGCGGAGGGGGCGGGGGACGGCGCCGCTCGCGTTGCTTG GTCCACAGCAACGGCCGTGCCCCGCGCGGTTGTTACCCTTGGCGTCACCC TTTTCCTGGCGGCGAGGCATTCTGCTGCAAAGTAG back to top
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