mRNA_Ecto-sp6_S_contig10.490.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.490.1
Unique NamemRNA_Ecto-sp6_S_contig10.490.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:726220..727122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size903
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.3721638-UTR-Ecto-sp6_S_contig10:726219..7264331682348693.3721638-UTR-Ecto-sp6_S_contig10:726219..726433Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 726220..726433 +
1682348693.4052646-UTR-Ecto-sp6_S_contig10:726886..7271221682348693.4052646-UTR-Ecto-sp6_S_contig10:726886..727122Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 726887..727122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.3902118-CDS-Ecto-sp6_S_contig10:726433..7268861682348693.3902118-CDS-Ecto-sp6_S_contig10:726433..726886Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 726434..726886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.490.1prot_Ecto-sp6_S_contig10.490.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 726434..726886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.490.1

>prot_Ecto-sp6_S_contig10.490.1 ID=prot_Ecto-sp6_S_contig10.490.1|Name=mRNA_Ecto-sp6_S_contig10.490.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=151bp
MPAPFRTSPARARVANGRKTDVEIVCLDLLAFAVYVLVNAPILPLPPHYC
PLQYSAALSKNKATKHAAWGCCTTTVSQPDNSAIVQGSMIRPITGPQMKR
AIDTLDTCLYLNTPKYATHTCDRWRSLRCGHSTNGVFAAILITSTKRLPA
*
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mRNA from alignment at Ecto-sp6_S_contig10:726220..727122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.490.1 ID=mRNA_Ecto-sp6_S_contig10.490.1|Name=mRNA_Ecto-sp6_S_contig10.490.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=903bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:726220..727122+ (Ectocarpus species6 EcLAC_371)
GTGAAAGTAAACTTAAGCAGGCGCCCCATATTTATCCACTAATACAATCG
CCGGCAACATCTATGCGTCATATAGACATCAGCTGCCGGCAGAAGCAAGT
ACACAAAAAACATCTCCACTCTTGCAAAGTGCTACGGCTGCGTTATTGCC
TGGTTGATGCTGCATGTTTGGATGTTAGTGCGTCATATTTGGGGCCGAAG
AAAGCTAGCTGCAAATGCCTGCCCCCTTCCGGACATCTCCCGCTCGAGCA
AGAGTTGCTAACGGACGGAAAACCGACGTGGAGATTGTTTGCTTGGACTT
GTTAGCGTTCGCGGTCTATGTGCTCGTGAACGCCCCCATCCTCCCTCTCC
CACCTCACTATTGCCCCCTGCAATATTCGGCTGCTCTATCCAAGAACAAA
GCGACAAAGCATGCTGCGTGGGGGTGCTGCACTACTACCGTAAGCCAACC
TGACAACTCAGCCATCGTCCAAGGATCAATGATTCGACCGATCACAGGTC
CCCAAATGAAAAGGGCAATCGACACTCTCGACACTTGCTTGTACTTGAAC
ACTCCAAAATATGCCACACATACATGTGACAGATGGCGGTCGTTGCGGTG
TGGTCACTCGACGAACGGCGTCTTCGCGGCAATCCTCATCACATCCACTA
AGCGTCTCCCCGCCTAAATCGTCCCCGCGCCTCAACAATATCAACTACCC
TAGGAAAAACGCACAGATATCCGAGCGGGTTTCGCGCCAGGAAAAAAAAC
GTCATCACACCCATACAGACCACAGCCGGCCCGCTAGACAAAAGTCGTCA
AGGGCCACGCTATGGCCACTACTCTAGCGCAATCAGGGGCCATGCTATGG
CCACTCGATGTAGTTGTCGTCCTGGTACTTCTTGATGTCAGTGGGCCGTC
TGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:726220..727122+

>mRNA_Ecto-sp6_S_contig10.490.1 ID=mRNA_Ecto-sp6_S_contig10.490.1|Name=mRNA_Ecto-sp6_S_contig10.490.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:726220..727122+ (Ectocarpus species6 EcLAC_371)
ATGCCTGCCCCCTTCCGGACATCTCCCGCTCGAGCAAGAGTTGCTAACGG
ACGGAAAACCGACGTGGAGATTGTTTGCTTGGACTTGTTAGCGTTCGCGG
TCTATGTGCTCGTGAACGCCCCCATCCTCCCTCTCCCACCTCACTATTGC
CCCCTGCAATATTCGGCTGCTCTATCCAAGAACAAAGCGACAAAGCATGC
TGCGTGGGGGTGCTGCACTACTACCGTAAGCCAACCTGACAACTCAGCCA
TCGTCCAAGGATCAATGATTCGACCGATCACAGGTCCCCAAATGAAAAGG
GCAATCGACACTCTCGACACTTGCTTGTACTTGAACACTCCAAAATATGC
CACACATACATGTGACAGATGGCGGTCGTTGCGGTGTGGTCACTCGACGA
ACGGCGTCTTCGCGGCAATCCTCATCACATCCACTAAGCGTCTCCCCGCC
TAA
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