mRNA_Ecto-sp6_S_contig10.488.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.488.1
Unique NamemRNA_Ecto-sp6_S_contig10.488.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: D8LST1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST1_ECTSI)

HSP 1 Score: 529 bits (1362), Expect = 7.730e-188
Identity = 302/306 (98.69%), Postives = 303/306 (99.02%), Query Frame = 2 
Query:  113 MRHGSLHSCARPAQSRASIPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFMFVDEGAEAAVKKALEAELAKAMKEGDGAGEQRASL 1030
            MRHGSLHSCARPAQ RA IPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVG EDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVA+SNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFMFVDEGAEAAVKKALEAELAKAMKEGDGAGEQRASL
Sbjct:    1 MRHGSLHSCARPAQ-RAIIPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGTEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAISNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFMFVDEGAEAAVKKALEAELAKAMKEGDGAGEQRASL 305
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: A0A6G0WIL3_9STRA (Ribosomal protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIL3_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.500e-86
Identity = 140/221 (63.35%), Postives = 167/221 (75.57%), Query Frame = 2 
Query:  263 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFM 925
            + P+  + +AL L K  A   FDETV++ + L VDPRK NQ+VRG V LP G+GK VRVAVFAKGD AD A AAGA IVGAEDL+A +  G IDF+RCVATP+MM +VGR ARVLGPRGLMPN KLG+VT+DV AA++AAKGGQ +FRA K G +H GVGKVSF+   L+EN+RA MVA+   KPE  KGKYI   HLSSTMG G+ +E   +DPSSP FM
Sbjct:   40 KKPLLSLPDALTLCKQHAVRKFDETVDIVVELGVDPRKPNQSVRGVVMLPNGTGKVVRVAVFAKGDKADEARAAGATIVGAEDLLADIQAGKIDFDRCVATPDMMGLVGRVARVLGPRGLMPNPKLGTVTQDVTAAIQAAKGGQVEFRAEKKGIVHAGVGKVSFSDEALVENIRAFMVAIGEAKPEGAKGKYIKACHLSSTMGPGIRLESRFLDPSSPHFM 260
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: A0A067C8G8_SAPPC (Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8G8_SAPPC)

HSP 1 Score: 267 bits (683), Expect = 2.440e-85
Identity = 137/221 (61.99%), Postives = 169/221 (76.47%), Query Frame = 2 
Query:  263 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFM 925
            + P   +  AL   K+ A   FDETV++ + L VDPRK NQ+VRG V LP G+GKTVRVAVFAKG+ A+ A AAGA IVGAEDL+A +  G +DF+RC+ATP+MM++VGR ARVLGPRGLMPN KLG+VT+DV AA+ AAKGGQ +FRA K G +H GVGKVSF+   LIEN+RA MVA+ + KPE  KGKYI  +HLSSTMG G+ +E   +DPSSP+FM
Sbjct:   41 KKPFLDLPTALANCKENAVRKFDETVDIVVELGVDPRKPNQSVRGVVTLPNGTGKTVRVAVFAKGEKAEEAKAAGATIVGAEDLLADIQAGKLDFDRCIATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVSAAISAAKGGQVEFRAEKKGIVHAGVGKVSFSDDALIENIRAFMVAIGDAKPEGAKGKYIKAMHLSSTMGPGIRLEARLLDPSSPQFM 261
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: A0A024UFR5_9STRA (Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UFR5_9STRA)

HSP 1 Score: 267 bits (683), Expect = 2.600e-85
Identity = 138/221 (62.44%), Postives = 168/221 (76.02%), Query Frame = 2 
Query:  263 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFM 925
            + P+ P+  AL   K GA   FDETV++ + L VDPRK NQ+VR  V LP G+GK VRVAVFAKGD AD A AAGA IVGAEDL+A +  G +DF+RCVATP+MM++VGR ARVLGPRGLMPN KLG+VT+DV AA++AA+GGQ +FRA K G +H GVGKVSF+   L+EN+RA MVAV   KPE  KGKYI   HLSSTMG+G+ ++   +DPSSP FM
Sbjct:   42 KKPLLPLNVALVECKQGAVRKFDETVDIVVELGVDPRKPNQSVRSVVSLPHGTGKVVRVAVFAKGDKADEARAAGAAIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAIKAAQGGQVEFRAEKKGIVHAGVGKVSFSDEALLENIRAFMVAVGEAKPEGAKGKYIKACHLSSTMGRGIRLDTRYLDPSSPHFM 262
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: W4FM96_9STRA (Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FM96_9STRA)

HSP 1 Score: 264 bits (674), Expect = 5.760e-84
Identity = 136/221 (61.54%), Postives = 166/221 (75.11%), Query Frame = 2 
Query:  263 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFM 925
            + P+ P+  AL   K GA   FDETV++ + L VDPRK NQ+VR  V LP G+GK VRVAVFAKGD AD A AAGA IVGAEDL+A +  G +DF+RCVATP+MM++VGR ARVLGPRGLMPN KLG+VT+DV AA+ AA GGQ +FRA K G +H GVGKVSF+   L++N+RA MVAV   KPE  KGKY+   HLSSTMG G+ ++   +DPSSP+FM
Sbjct:   41 KKPLVPLNVALAACKQGAVRKFDETVDIVVELGVDPRKPNQSVRSVVTLPHGTGKVVRVAVFAKGDKADEARAAGATIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAITAAMGGQVEFRAEKKGIVHAGVGKVSFSDDALLDNIRAFMVAVGEAKPEGAKGKYVKACHLSSTMGHGIRLDPRQLDPSSPQFM 261
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: A0A485K7N6_9STRA (Ribosomal protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7N6_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.120e-83
Identity = 134/221 (60.63%), Postives = 167/221 (75.57%), Query Frame = 2 
Query:  263 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFM 925
            + P+  + +AL   ++ A   FDETV++ + L VDPRK NQ+VRG V LP G+GK VRVAVFAKG+ A+ A AAGA IVGAEDL+A +  G +DF+RCVATP+MM++VGR ARVLGPRGLMPN KLG+VT DV AA++AAKGGQ +FRA K G +H GVGKVSF  + LIEN+RA MVA+   KPE  KGKYI   HLSSTMG G+ ++   +DP+SP FM
Sbjct:   40 KKPLLLLPQALTTCREHAVRKFDETVDIVVELGVDPRKPNQSVRGVVTLPNGTGKVVRVAVFAKGEKAEEAKAAGASIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTNDVTAAIQAAKGGQVEFRAEKKGVVHAGVGKVSFTDAALIENIRAFMVAIGEAKPEGAKGKYIKACHLSSTMGPGIKLDARYMDPTSPHFM 260
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: A0A7S4D8H6_HETAK (Ribosomal protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8H6_HETAK)

HSP 1 Score: 264 bits (675), Expect = 3.070e-83
Identity = 137/225 (60.89%), Postives = 172/225 (76.44%), Query Frame = 2 
Query:  275 YPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNID----FERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFMFVDE 937
            +P+AEA+  ++  AKA FDET E+A+ L VDPRK NQ VRG+VQLP G+GK VRVA FA G  ADAA  AGA +VG + LV  + +G       F+R VATPEMM  + + AR+LGPRG+MPNAK+G++T D+E+AV+AA GGQ +FRAGKNG LH G GKVSF +++L+EN++A MVA+SN KPE  KGKYI Q HLSSTMG G+ V+VAT+DP SPRF FVDE
Sbjct:  100 FPVAEAIQFLQSNAKAKFDETTEIALQLGVDPRKPNQAVRGSVQLPFGTGKAVRVAAFATGAKADAAKEAGAAVVGDQYLVEEIQRGGAGALAAFDRVVATPEMMPHLKKIARILGPRGMMPNAKVGTITEDIESAVKAAMGGQVEFRAGKNGVLHAGFGKVSFEKNNLMENLKAFMVAISNAKPEGAKGKYIKQAHLSSTMGSGIKVDVATIDPGSPRF-FVDE 323
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: A0A7S2BLH2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BLH2_9STRA)

HSP 1 Score: 262 bits (670), Expect = 4.030e-83
Identity = 133/216 (61.57%), Postives = 163/216 (75.46%), Query Frame = 2 
Query:  281 IAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFMF 928
            +A A+  VK  ++A FDETVE+A+ L VDPRK+NQTVRG  QLP G+GK VRVAVFAK  DADAA  AGAD+VG EDLV  + KG I+F+RC+ATPEMM +V R AR+LGPR LMPN KLG+VT++V   V+  KGGQ Q+RA KNG +H G+GKVSF    L EN+RA M+A++N KPE +KGKYI   HL STMG G  +++  VDPSSPRFM 
Sbjct:   66 VAAAIANVKGRSRAKFDETVELAVKLGVDPRKSNQTVRGATQLPNGTGKPVRVAVFAKDADADAAREAGADVVGGEDLVQEIQKGIIEFDRCIATPEMMPIVSRVARILGPRQLMPNPKLGTVTKNVAVGVKELKGGQVQYRAEKNGIVHAGIGKVSFTDEALSENIRAFMIALTNAKPESVKGKYIQAAHLCSTMGPGFKLDIKAVDPSSPRFMM 281
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: UPI001A95871A (50S ribosomal protein L1 n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A95871A)

HSP 1 Score: 256 bits (654), Expect = 2.180e-81
Identity = 131/213 (61.50%), Postives = 164/213 (77.00%), Query Frame = 2 
Query:  263 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATV 901
            R+ +Y + +A+ L+K+GAKA FDETVE+AM L +DPR A+Q VRG V LP G+GKTVRVAVFA+GD AD ATAAGADIVGA+DL   ++ GNI+F+RC+ATP+MM VVGR  +VLGPRGLMPN KLG+VT DV  AV+AAK G  +FRA K G +H G+GK SF+   L EN+RA + A+S  KP   KG YI +V LSSTMG GV ++VAT+
Sbjct:   17 RDALYSLTDAVTLIKNGAKAKFDETVEIAMNLGIDPRHADQMVRGVVNLPNGTGKTVRVAVFARGDKADQATAAGADIVGADDLAEQILAGNINFDRCIATPDMMGVVGRLGKVLGPRGLMPNPKLGTVTPDVAGAVQAAKAGSVEFRAEKTGIVHAGIGKASFSEDALAENIRAFIDAISRAKPTGAKGTYIEKVSLSSTMGPGVKLDVATL 229
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Match: A0A835YR92_9STRA (Ribosomal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR92_9STRA)

HSP 1 Score: 254 bits (650), Expect = 7.460e-80
Identity = 132/222 (59.46%), Postives = 172/222 (77.48%), Query Frame = 2 
Query:  275 YPIAEALDLVKDGAKA---NFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFMFV 931
            + +A A+ +V+  A+A   NF E++E+A+VL VDPRK NQ VRG V LP G+GK VRVAVFA+G +A+AA AAGA  VGAEDL+  +M G IDFER +ATP+MM +VGR ARVLGPRGLMPN KLG++T+D   AVRA+KGGQ Q+RA K+G +  G+GKV+F    L++NVRA M+A+S  KPE  KGKY+ Q ++SS+MGKGVPV +AT+DPS+ RFM +
Sbjct:   17 HSVATAIAMVQANARAQRRNFVESLELALVLGVDPRKPNQAVRGAVTLPHGTGKEVRVAVFARGAEAEAALAAGASRVGAEDLMEDIMAGKIDFERLIATPDMMPLVGRVARVLGPRGLMPNPKLGTITKDTAPAVRASKGGQVQYRAFKDGQVLAGLGKVNFTHEQLMDNVRAFMLAISTSKPEGAKGKYMKQAYMSSSMGKGVPVTIATIDPSNGRFMLI 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST1_ECTSI7.730e-18898.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6G0WIL3_9STRA1.500e-8663.35Ribosomal protein n=1 Tax=Aphanomyces euteiches Ta... [more]
A0A067C8G8_SAPPC2.440e-8561.99Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=47... [more]
A0A024UFR5_9STRA2.600e-8562.44Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860... [more]
W4FM96_9STRA5.760e-8461.54Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID... [more]
A0A485K7N6_9STRA1.120e-8360.63Ribosomal protein n=1 Tax=Aphanomyces stellatus Ta... [more]
A0A7S4D8H6_HETAK3.070e-8360.89Ribosomal protein n=1 Tax=Heterosigma akashiwo Tax... [more]
A0A7S2BLH2_9STRA4.030e-8361.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001A95871A2.180e-8161.5050S ribosomal protein L1 n=1 Tax=Azospirillum sp. ... [more]
A0A835YR92_9STRA7.460e-8059.46Ribosomal protein n=1 Tax=Tribonema minus TaxID=30... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:714393..721130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score528.1
Seed ortholog evalue2.8e-147
Seed eggNOG ortholog2880.D8LST1
Preferred nameMRPL1
Model size1033
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K01942,ko:K02863
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,ko03010,map00780,map01100,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorymitochondrion
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons7
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0081@1,KOG1569@2759
Ec32 ortholog descriptionRibosomal protein L1/ribosomal biogenesis protein
Ec32 orthologEc-15_002720.1
EC6.3.4.10,6.3.4.11,6.3.4.15,6.3.4.9
Cds size951
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.488.1prot_Ecto-sp6_S_contig10.488.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 714475..721130 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348702.222801-UTR-Ecto-sp6_S_contig10:714392..7144741682348702.222801-UTR-Ecto-sp6_S_contig10:714392..714474Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 714393..714474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348702.2349281-CDS-Ecto-sp6_S_contig10:714474..7145481682348702.2349281-CDS-Ecto-sp6_S_contig10:714474..714548Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 714475..714548 +
1682348702.2440908-CDS-Ecto-sp6_S_contig10:716334..7165211682348702.2440908-CDS-Ecto-sp6_S_contig10:716334..716521Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 716335..716521 +
1682348702.2570546-CDS-Ecto-sp6_S_contig10:717067..7171541682348702.2570546-CDS-Ecto-sp6_S_contig10:717067..717154Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 717068..717154 +
1682348702.2762482-CDS-Ecto-sp6_S_contig10:717441..7175441682348702.2762482-CDS-Ecto-sp6_S_contig10:717441..717544Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 717442..717544 +
1682348702.2856388-CDS-Ecto-sp6_S_contig10:718126..7183381682348702.2856388-CDS-Ecto-sp6_S_contig10:718126..718338Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 718127..718338 +
1682348702.29613-CDS-Ecto-sp6_S_contig10:719153..7192551682348702.29613-CDS-Ecto-sp6_S_contig10:719153..719255Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 719154..719255 +
1682348702.311472-CDS-Ecto-sp6_S_contig10:720944..7211301682348702.311472-CDS-Ecto-sp6_S_contig10:720944..721130Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 720945..721130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.488.1

>prot_Ecto-sp6_S_contig10.488.1 ID=prot_Ecto-sp6_S_contig10.488.1|Name=mRNA_Ecto-sp6_S_contig10.488.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=317bp
MSSTVRLVAAMRHGSLHSCARPAQSRASIPCQALRAASSKSKNKNRRKAS
PTQAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKAN
QTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGAEDLVASVMK
GNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAA
KGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAVSNLKPEVIKG
KYISQVHLSSTMGKGVPVEVATVDPSSPRFMFVDEGAEAAVKKALEAELA
KAMKEGDGAGEQRASL*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:714393..721130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.488.1 ID=mRNA_Ecto-sp6_S_contig10.488.1|Name=mRNA_Ecto-sp6_S_contig10.488.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6738bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:714393..721130+ (Ectocarpus species6 EcLAC_371)
CGGAGGAGTAGGGGAGAGCAGCAGAGCAGGGAGGCAGTGCCAGCGCCACG
CGTAGTCCAGTCACCTTGGATACCACGGTACTATGTCGTCCACCGTTCGA
TTGGTAGCTGCGATGAGGCATGGGTCTCTACATTCTTGCGCACGGCCAGC
ACAAAGGTGAGCACCTGGCAGTGTATTGAATACGTTGATGCCTGAGCGGT
GTTCCTTTATCTTAGAGCCTTCCTTGCTGCATGCCTCCCCAACACACCTT
CGACCAACACCACAGACCGAGCTCTCTCGCCGCATATGGCATCACTCTTA
GGATAACATGGCGTTGTCGATGGAAGCACGCGTCCCCTCAgagGTGCCTC
GAGGTATGCCGGCATCTGCAAAACACGTTTCGTAGGTACACCGCATGTTG
TGCTGGCAACGACGCCACTACACACAGGTAGAGAAGGTCAACCGCTGCAA
CCGCTGCTCTGTGCAACACCTGCGAGGGATTGTTCTTGCGCAACACTCTT
GCCCCAACTGTTCTTATGCATCCCGTGTGTGATCGCTGGGTGTCCTTCCG
ACCGAAGTTTTCAAAGCCAACCAAAATCAAGGATGGACCATTTCAACCCT
GCTTTTGGTATCAGTAGCAACAACTGCCAGTCTGGCGCTGCCTCTGCCGC
AGCTGCTGTCTGATGGACTCATTGGCGCGCTGTGAAACGACATGCACGGA
GTTATGCGTATGTGGTGGTGAAGTCATGCGCAAACACGCAGAACAGTCTC
CCGTGGCTTCTTGGCGGCGGTATGGGTGTTTTTCTCTGCACTTTGTTGCA
GGCGTGGTGTGTGCGTCAGGAAGGTATCGTACCTCCTTTGGGCTGAGTTC
CAGGGCTCGATTACTCCCCCTCGACGAAGATTATGCAAATATCAAATATC
AAACGATAACGTTTCGGAGAAAGCTCTCGACGGGATCAACAACACCGTAC
AATTGTGTGCGTCCCGTCTGACCTAGCCACACTCTGGGAGAGCAACACAT
GCCCACCCCCACTACCGTAAGAGCCGGAGAGATGGCACCCCCGTGTTAGC
GTTGTTGTATAGCGTATTTCTCCACAACCACGGGGGTACCACTGCCGAAA
AGGGCTGTTTTGGAAACATCTCGTCTAGGGCTTTCCTGAGAGGTATCGGT
TGGTGTTCGCACCCTCCTAGTTGTGGAGAAATACGCTACAAAAAAACGCA
GACACGGGGGTGTCATCTCTCCGATTCGTACGGTACTCCCCACCCAAGGC
ACAATAGTAGACAGTCGACGGTGTCAGGACAGGTTCCCCTTCTAAGGCTC
AACTCGCCCTCATCGTTTCGGGGCACACTCCTCGAACTCCCGCAAGCAGA
TTGATGGCACAATGCAGAAACCTAAAGGAGTTCACAGGTTTGGAGAAAAA
ACCGTTTGTATTCGTGGCGATGTCGGACGCGCGGCGGCGGCGGCGGCAGC
GGCCATGCTCTGCATCAGAGCAACGTGCCGGCTTGTGGCCACAGCCAGTA
CTCCCGGTCGAATCCTAGACACAAGTCCTCCTACCTCGTGAACAAGCGAC
TCGCTGAACAGCACAGCAGTGCAAGATCTGGTGCCTCTCTCGGTCAGCAC
GTCAGTACCCCCCCTCCCTCGAAGGTCATATTTCAGCACCCCGTTCCGAA
GGGCTTGTTTCCCACAATCCCCCCTCCCAGTGGAGCTGGGATCCCCTGCC
CTACCCGCGCTCAAAACGGTCATATCTCGGTACCCTTCCGATCGGCTTGT
CACCCACCCACACCCCTCCCAGCAGAGCTACATATAGCATCGCCTGTCCC
CCTCGCGAAAGGTCCACATTTCGGCACACGCATCCGAACGGCATGTTTCC
CACGCATACCCAGCAGAGCTAGCCCTCCCCCCTCGAAAATGGTCATATTT
CAGCACCCTCTTTCGAACGGCGTGTTTCCCACACGCACCCAGCAGAGCTA
GCATCCCCTGTCAAGCGCTGCGCGCGGCGTCTTCCAAGTCCAAGAACAAG
AACCGCAGAAAGGCTTCGCCGACCCAGGCGCAGGCGGCGGTCGCCGCCCG
AAACCCTGTGTACCCCATCGCCGAGGCGTTGGATCTGGTGAAGGACGGTG
CCAAGGCCAACTTCGACGAGACTGTCGAGGTGTGAATTTCGTGGGGAAAG
ACAACCGTAGAAAAAGAACGGGTAGTATCGAACTGGTAGTCCTTCTGCGT
GTTATGTGTGTAAAATTTCTATGACACATGTCGAGGTGCGATTTTTCTCC
AAGACAACCCGCAGTACCGCAGTAATAGCATGTGGTATCCTATATGTCTC
TGGTTTTTATTGTTTTGCGGACCCTTCGGGTCCATATCGTTTGAGTATGT
ACCTTTGGGGGGGTGAGTTCTAGCCTGTGACCACTGGATTCAACCGCGTC
AAGTGGTAACCCAGTACGGGCAGATGGAGGTACTGCGCAGAGAGATCGGA
ACGGTTTCAATGTGAGTATAACAACAACACCGTAAGGTTTCTCTCCCGCC
GGAGGGTTCGAGTAGCCGACCCGTTCTGGTGTGTAAGATGCCTTGGTATT
GTGCGGTACGGCTTTCGCAACCCCAACCTTTTTCAAGCTCTTCCGGTGCT
TATCGCTGATGATGCTTCACTCCGACCTTCGAACCCCCTGCttTTTCCTT
TTTTGTGCTCGTTTTCTGCTTCAAGGTGGCGATGGTGCTTAACGTGGACC
CCCGAAAGGCAAACCAGACTGTCCGGGGCACCGTGCAGCTGCCGAAAGGT
AGCGGGAAGACGGTGAGGGATCGAGAGCGACATATGGGGGGGTAGAGGCA
GAGGAGCGCCTGCGTAGCAGCTACGGCATATGTCTGTGTGTTTCTTGTTT
GCTGGTGTCGTTGCTTTCTTGACCCGCGTCCTACCAATTCTTCTACTCCA
TACCCTCCTTCCTCTACGACCCGCCCCCTTTTTATCGGGCTGAACAACTC
TGTGGGCTACTCTCTCGTCCTTCATTCAGCTCTGCCTGTGCCCCCCCCCG
TCCTCCTGCGTATTTTTAACACTGGTCGGTTGTACCTGGCGTACTGTAGG
TGCGGGTGGCGGTGTTCGCGAAGGGGGATGACGCAGACGCGGCGACCGCG
GCGGGCGCGGACATTGTCGGCGCCGAAGACCTTGTGGCCTCCGTGATGAA
AGGTGAGTGACGTCATGTTCGACCTGTCCCTGATGTGTGGTTGTTCCTGG
TGTAGCAACAATCGCTCTGACCTCTACGCTTTTCCCAGCACCCGCAGCAC
CGACGTTAATCCTCAAAGACCTGTGAACCGAAGTACAGATGCATGATGTC
AAAGTGAACATCAGCTTGATTTGATTCGCTTTTGGCCAAGCGACGCGACC
GGTACACGATGTACCGGGCGTCGGGAATCTGCTGATAAGCGCAAGTGTTT
TCTTTGTTTTGTCGGTGATGTAGAACAACAGCAGAGGAAAAGGAAGGAAC
GATTCCGCATATTGACATCATTTCTCTAGCGTGAGAAACCCTTGCTCCGT
CCTCCCGAGGACGCATGGTCATTTGTCTAACAACCAAAGCATGAACAACG
TCGGTACCCCCCCGCGCTCCCGCTTCGCGATTGGTGATGGTGCTAAGCTG
GTCTGGTGAAAAGCCGGCGTGCTCCGTCCCGGCTTTGTAGTGATGCGAGG
TCAACGGTCTAACGACTACGGCTACGATTATATGATGATGAGTACCCCCC
CCCACCCCACCTCACCCCAAAAAATGGAATCCAGGGAACATCGATTTCGA
GCGGTGCGTTGCTACGCCGGAGATGATGTCGGTCGTAGGGCGAGCCGCGA
GGGTTCTGGGCCCTAGGGGCCTCATGCCCAACGCCAAGCTAGGCAGCGTG
ACTAGAGACGTGGAGGCGGCGGTTAGGGCGGCGAAGGGGGGACAGGCGCA
GTTTAGGGCGGGAAAGAACGGGGCGCTGCACATGGGGGTCGGTAAGGTGA
GAAGCCCGGTCgcgGGGGGGGGTTCCTGCGGAAACGTTGTTTGTTGTTGG
TGGTAGTGGTGGTGGTGGTGTTGCCGTCTGTGTCGTCCTGTGAGGTAAGC
AAGCACGTGGTCCCGTGCTCCGCCAAACACTCGCGCAAGCAGGTGGTGCT
CCGAAAAATGCTCATGCCGTCCACCCCAGCAAATGGATGTAGCCGCCATC
GCATGACATGAAAAAGGCTGCGCGTGGCCATCGCAGTGAGTGGGCGAGGA
CGTGCTCACCCCACGAAAACGCCAAAAATGGCACCTGTTTCGTTTTTTTT
TTCTTCTTTGTATATTTTTAGGCGTATGTTTCTTCTTGCCGGACCGGCTT
TGTTTCATCTTTTCGACACAAAAATATTTTTAACTGCCTGCTTGGTCGAT
TCGTGCTGCTACGGTACCAGAATGACATCGACACAACCAATTATCCAAGA
AAATGTGGACTACTGTTCTCGCAAGACGAAACGATTTTTTGACGACAAAA
ACCGGGGGAAGGAGAGTTGCGCGTTTTGCGCGGGCGTTCTCGTTCTCTCG
TCGTTTGCTTCCGTCTTGGCAACGACTTGTTGCTTTGCTTTTGGTGGACA
GGCGAGATTGAAAGTGGGAGGCTAGGCATGATCAATCGTGtTTTTTTCTT
TCGTTTGTGTCTTGTTTGGAGCGGTCACGACGAGGCGGCTTGGAGAGGCC
GACGACATGACCGAGACTGCGTTTTTTCCACGTCTCCTTTTGTGTGTGTG
TGTTTTGTGCTCTTTTCTTACGCCACGTCGTTGTCGTTAATGTTGTTGCT
GTTGCCGACAGGTGAGCTTTGCGAGGTCGGACCTTATCGAGAATGTTCGC
GCGACCATGGTTGCTGTCTCCAACCTCAAGCCCGAGGTGATCAAGGGGAA
ATACATCTCGCAGGTGTGTGCGTGTATGTTTGTGTGTTGAGACCTTGTTT
TTTTTGTTGTGCTTCGGACGTGCTATCCAATGATAAGACGTCAGTCTTGT
GTGCGTGTTTCTTTATTGTCTGAGAACGTTTGCATCGACCGCGTAAGTCG
TTCGGCCAATAAAAAAATTGTCATCTTCGCCGGGTAACACACGGAAAAGT
TCTCTGTTAGAGCCCACAAACACCGGTTCCTGAGAGTATGCATAGATGTC
GATATGATACTCCCATGCTTGTTTTTCCACTTGGGTGTCGCCGCCGACGT
TTTGTTTTTTCGGTATCGGACCTCTCCATGTACTTTCACGAGAGCGCAGG
CTGGCCGCTTTCTCATTGGCACACGGTTTTCTCCCCGATGATCTTTTGAC
GAAGGTCGGGGATGGGTACAAGTAGGCTCAAACGGCGCGCTTGTGGTCTG
CAGTGCTGGTTCTCACAAGGCATGCCCGCAACGCTCGGTCGAGGCCTCCT
TTCAACAGACCTACATTTGTGTTCAGCCTATCTCCTGTCTAAATATTTCA
TTCCTGCAGTCTGCACCACGGTATTGCATCGACGAAGTCAGGGTAGCAAC
AACGAGATCTGCGGCATGCCAAATTCCCCTGCCGTTTCTGCGAACACACG
TCACAGTTCGTCCACCTCGGCTTTCCTTTCGGGGCGACAATGCTGATGGC
GCAGGCCACGCACTTACAGCCCTACGCGAAAATAATTCCCTCCCTGCATC
CCCTACGTTGCCCCCCCCCCTCTCCGGAACCATTGGCCATATCGGTGATC
GGTCCTGTGGGAACAACAACGCTCCGTCCTCTCGAGGACGCGTGGTCGAT
GGTCTAGCCTCTTAACGCATGCAAAACATGAGAGGACCGCCTTCGCGGAA
ATTCAGTATTGTAAGGGAATAGAACAGGGAGGGGGTACGCAGACCCTATT
TCCCTAACCCTAACCGTAGCCCAACTTCCCCGATTGCATGCTTTATCCAA
CATGTTCCCTGAGGCCAGTTGTTATGGAGAAATTTTCCGATTTGGAATCC
CGATATTACGCCTTTTACATCCAAGCCCCCATGAGGCCGCAGGAGTTCTG
CGTACTTCGTTAGAAAAGCTCACAAAAGCGCTTTGGCACTCAGTACTCGC
CTCACAGAGACCCGTTTGCAAACCTTCGAGGCCGCGTAGAGCATTGCTGT
GAGTCTCTTCGAGCCAAGTTTGGGGAGCTGCGGTGGAGTGTGTGTTCACC
ATTATGATAAAATAGGAATTCCAATTTGGAATTGCTGGACGATCCGGGTG
GGAATTCCTCATGAATTCCAAACTGGATTTGGTTGGAATTCCAAATTGGG
AATCGTGACTTTGCTTTCATATCATTGCATTCTCTACGCGCACTGCACTC
TAGCTGCCCAAACTTGGCTCCGAGAAGCTCACAGTAGTGGAGTGTACAGC
CTTATCGGTTAGATAGCAAACAGGGGTCTGAGGCGAGGACGAATTGGCAA
AGCGCTTTGGTGCTCTCTGCTTGCTGCCTAGTACGCAGACCTCCTTCTTT
CAGGGGGTGGTGGAGCATTATCTGCCGATCCCCCGGATTCCAAATCGGAA
AATTTCTCCATAACAACTGGCCTGAATACAATACGTTGCGAAGCCTACTG
ACATGAGAGTAACCCCCCCCAACGTCGCCCCCCCCTTCCTCCCCGAAAAC
AGGTTCACTTGAGCTCGACGATGGGGAAGGGCGTGCCCGTAGAGGTGGCT
ACCGTGGACCCGAGCTCGCCCCGCTTCATGTTTGTGGACGAGGGCGCGGA
GGCGGCGGTGAAGAAGGCGTTGGAGGCGGAGCTAGCGAAGGCCATGAAGG
AAGGGGATGGGGCTGGGGAACAGCGAGCTTCCTTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:714393..721130+

>mRNA_Ecto-sp6_S_contig10.488.1 ID=mRNA_Ecto-sp6_S_contig10.488.1|Name=mRNA_Ecto-sp6_S_contig10.488.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:714393..721130+ (Ectocarpus species6 EcLAC_371)
ATGTCGTCCACCGTTCGATTGGTAGCTGCGATGAGGCATGGGTCTCTACA
TTCTTGCGCACGGCCAGCACAAAGCAGAGCTAGCATCCCCTGTCAAGCGC
TGCGCGCGGCGTCTTCCAAGTCCAAGAACAAGAACCGCAGAAAGGCTTCG
CCGACCCAGGCGCAGGCGGCGGTCGCCGCCCGAAACCCTGTGTACCCCAT
CGCCGAGGCGTTGGATCTGGTGAAGGACGGTGCCAAGGCCAACTTCGACG
AGACTGTCGAGGTGGCGATGGTGCTTAACGTGGACCCCCGAAAGGCAAAC
CAGACTGTCCGGGGCACCGTGCAGCTGCCGAAAGGTAGCGGGAAGACGGT
GCGGGTGGCGGTGTTCGCGAAGGGGGATGACGCAGACGCGGCGACCGCGG
CGGGCGCGGACATTGTCGGCGCCGAAGACCTTGTGGCCTCCGTGATGAAA
GGGAACATCGATTTCGAGCGGTGCGTTGCTACGCCGGAGATGATGTCGGT
CGTAGGGCGAGCCGCGAGGGTTCTGGGCCCTAGGGGCCTCATGCCCAACG
CCAAGCTAGGCAGCGTGACTAGAGACGTGGAGGCGGCGGTTAGGGCGGCG
AAGGGGGGACAGGCGCAGTTTAGGGCGGGAAAGAACGGGGCGCTGCACAT
GGGGGTCGGTAAGGTGAGCTTTGCGAGGTCGGACCTTATCGAGAATGTTC
GCGCGACCATGGTTGCTGTCTCCAACCTCAAGCCCGAGGTGATCAAGGGG
AAATACATCTCGCAGGTTCACTTGAGCTCGACGATGGGGAAGGGCGTGCC
CGTAGAGGTGGCTACCGTGGACCCGAGCTCGCCCCGCTTCATGTTTGTGG
ACGAGGGCGCGGAGGCGGCGGTGAAGAAGGCGTTGGAGGCGGAGCTAGCG
AAGGCCATGAAGGAAGGGGATGGGGCTGGGGAACAGCGAGCTTCCTTGTG
A
back to top