mRNA_Ecto-sp6_S_contig10.482.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: A0A6H5JPN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN3_9PHAE) HSP 1 Score: 497 bits (1280), Expect = 8.580e-169 Identity = 425/507 (83.83%), Postives = 433/507 (85.40%), Query Frame = 1
Query: 1 MSKKRERDGGGSDTFQHDN-GAESLLFEIAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDGNNNVASTAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQSLRGEDEQASGXXXXXXXXXXXXDAAPKLTAADFKTHFGGGNPASLMSGDSKSKASAGNDAGNGERGXXXXXXXXXXXXXXXXXXXXXXTVGRRTSSRSTKSTKTYVEEDSDNGELEDGSGTXXXXXXXXXXXXXXXXXX--GDEDVVAVEGGSSGSSKNGGXXSXXXXXXXXXXXXXGVEAFSILNAPGTAKRKPVTVGSGKEEKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGSGEENXXXXXXXXXXXXXVAAAAVAMRSGPARRSSRSSAVSRVKYTQ 1512
MS+KRERDGG DTFQ D+ GAESLLFEIAP XXXXXXXXXXXXXXXXXXXXXX STAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPG LGLGNGSTGGKLGTLNN PANPVLYVEFPEGRLKCTGR VHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFS ACWVGKKEDNPSEEPLPLPESLQ+LRGEDEQA G DAA KLTAADFKTHFGGGNPASLMSGDS+SKASA XXXXXXXXXXXXXXXXXX TVGRRTSSRSTKSTKTYVEEDS +GELEDG G+ XXXXXXXXXXXXXXXXX GDEDVVAVEGGSSGSSK+GGXXSXXXXXXXXX GVEAFSILN+P TAKRKPVTVGSGKE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGGSGE XXXXXXXXXXXXXVAAAAV RSGPARRSSRSSA SRVKYTQ
Sbjct: 1 MSRKRERDGGDGDTFQQDSSGAESLLFEIAPPPEDRTXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXSTAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGVLGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRMVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQTLRGEDEQAPGSGGDDGDATGGGDAAQKLTAADFKTHFGGGNPASLMSGDSESKASA--XXXXXXXXXXXXXXXXXXXXXXXXXXGATKTVGRRTSSRSTKSTKTYVEEDSSDGELEDGGGSSXXXXXXXXXXXXXXXXXXDGDEDVVAVEGGSSGSSKDGGXXSXXXXXXXXX----GVEAFSILNSPATAKRKPVTVGSGKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDD-KGGSGEXXXXXXXXXXXXXXXVAAAAV--RSGPARRSSRSSAASRVKYTQ 497
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: D8LST7_ECTSI (Putative type II topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST7_ECTSI) HSP 1 Score: 493 bits (1269), Expect = 3.120e-167 Identity = 326/359 (90.81%), Postives = 329/359 (91.64%), Query Frame = 1
Query: 175 AGDGNNNVASTAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQSLRGEDEQASGXXXXXXXXXXXXDAAPKLTAADFKTHFGGGNPASLMSGDSKSKASAGNDAGNGERGXXXXXXXXXXXXXXXXXXXXXXTVGRRTSSRSTKSTKTYVEEDSDNGELEDGSGTXXXXXXXXXXXXXXXXXXGDEDVVAVEGGSSGSSKNGGXXSXXXXXXXXXXXXXGVEAFSILNAPGTAKRKPVTVGSGKEEKNA 1251
AGDGNNN ASTAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNN TPANPVLY+EFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFS ACWVGKKEDNPSEEPLPLPESLQSLRGEDEQASG XXXXXXXXX DAAPKLTAADFKTHFGGGNPASLMSGDS+SKASAGNDAGNG XXXXXXXXXXXXXXXXXXXX TVGRRTS TYVEEDSD+GELEDG XXXXXXXXXXXXXXX GDEDVVAVEGGSSGSSKNGGXX XXXXXXXXXXX GVEAFSILNAP AKRKPVTVGSGKEEKNA
Sbjct: 48 AGDGNNNAASTAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNATPANPVLYMEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQASGGGXXXXXXXXXGDAAPKLTAADFKTHFGGGNPASLMSGDSESKASAGNDAGNGXXXXXXXXXXXXXXXXXXXXXXXTKTVGRRTSXXXXXXXXTYVEEDSDDGELEDGXXXXXXXXXXXXXXXXXXADDGDEDVVAVEGGSSGSSKNGGXXXXXXXXXXXXXX--GVEAFSILNAPAAAKRKPVTVGSGKEEKNA 404
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: A0A453TDM3_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453TDM3_AEGTS) HSP 1 Score: 100 bits (250), Expect = 8.630e-21 Identity = 52/136 (38.24%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 232 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQSL 639
AA+ PS + + G ++V+ + + RGR L PG L + GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS + WVG KE+NP E L P+ +Q++
Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGLLAPA--AAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMIVFSESWWVGTKEENPDELKLEFPKEMQNV 175
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: A0A453TD59_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453TD59_AEGTS) HSP 1 Score: 100 bits (250), Expect = 1.840e-20 Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = 1
Query: 232 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQS 636
AA+ PS + + G ++V+ + + RGR L PG L + GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S V FS + WVG KE+NP E L P+ +Q+
Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGLLAPA--AAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMVLFSESWWVGTKEENPDELKLEFPKEMQN 174
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: A0A446Z088_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446Z088_TRITD) HSP 1 Score: 101 bits (252), Expect = 3.360e-20 Identity = 54/135 (40.00%), Postives = 80/135 (59.26%), Query Frame = 1
Query: 232 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQS 636
AA+ PS + + G ++V+ + + RGR L PG L G+ GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS A WVG KE+NP E L P+ +Q+
Sbjct: 43 AALPPSGAVVRLQGRDIVRPRGQRRGRFLFSFPGLLAPAAGA-GGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMIVFSEAWWVGTKEENPDELKLEFPKEMQN 173
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: A0A811S6P0_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811S6P0_9POAL) HSP 1 Score: 103 bits (257), Expect = 4.190e-20 Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 232 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQS 636
A +APS + + G +VV+ + + R L PG L ++GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS ACWVG KEDNP E L P+ Q+
Sbjct: 41 APLAPSGAVTRLQGRDVVRRGGQRKSRYLFSFPGLLAPA--ASGGRIGELADLGTKNPVLYLEFPQGRMKLFGTHVYPKNKYLTLQMTRSAKGVV---CEDVFESLIVFSEACWVGTKEDNPEELKLEFPKEFQN 170
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: A0A176W2G0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W2G0_MARPO) HSP 1 Score: 102 bits (253), Expect = 7.350e-20 Identity = 53/141 (37.59%), Postives = 78/141 (55.32%), Query Frame = 1
Query: 229 PAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQSLRGED 651
PA + P+ T+R+C+G ++VK K + + L PG + +GGK G L + NP+LYV+FP GRLK G V+ K ++ T++ G C D F+S V F + W+G KE+NP E LP P LQ ++ D
Sbjct: 43 PAPLVPTKTIRKCNGKDIVK-KGNRKTKYLFAFPGLVAP---VSGGKFGDLTHLDSRNPILYVDFPHGRLKLFGTIVYPKNKYLTMHFVPGRGDIV---CEDYFESLVVFPESWWIGTKEENPEELRLPFPSDLQQVKHAD 176
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: A0A453TD71_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453TD71_AEGTS) HSP 1 Score: 100 bits (248), Expect = 2.440e-19 Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 1
Query: 232 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQS 636
AA+ PS + + G ++V+ + + RGR L PG L + GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS + WVG KE+NP E L P+ +Q+
Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGLLAPA--AAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMIVFSESWWVGTKEENPDELKLEFPKEMQN 174
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: W4FT72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FT72_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.250e-19 Identity = 54/134 (40.30%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 235 AIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQS 636
AI + LR C G ++ K +G+ L PG + GG LGTL+ PVLY++FP+GRLK G V+A+ RF TL + A R + C DVFD+ V F W+G + NPSE PLP+P L +
Sbjct: 26 AIPLARALRACHGQDIKKKSGHRKGKFLFAFPGLVSPM--PEGGTLGTLDKLDTDKPVLYIDFPQGRLKMQGTLVYAQNRFLTL---QCARRGKSVVCDDVFDAVVTFPEVSWIGPVDANPSEAPLPIPSFLHA 154
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Match: A0A1D6LLW1_MAIZE (DNA-binding protein RHL1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6LLW1_MAIZE) HSP 1 Score: 97.8 bits (242), Expect = 3.300e-19 Identity = 51/136 (37.50%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 232 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNTTPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSTACWVGKKEDNPSEEPLPLPESLQSL 639
A +AP++ + + G +VV+ + + R L PG L ++GG++G L + NP+LY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS A WVG KEDNP E L P+ Q++
Sbjct: 41 APLAPAAAVTRLQGRDVVRRGGQRKSRYLFSFPGLLAPA--ASGGRVGELADLGTKNPLLYLEFPQGRMKLFGTHVYPKNKYLTLQMTRSAKGVV---CEDVFESLIVFSEAWWVGTKEDNPEELKLEFPKEFQNV 171 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.482.1 >prot_Ecto-sp6_S_contig10.482.1 ID=prot_Ecto-sp6_S_contig10.482.1|Name=mRNA_Ecto-sp6_S_contig10.482.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=539bp MSKKRERDGGGSDTFQHDNGAESLLFEIAPPPEDRTTKRSKKSSAADAPLback to top mRNA from alignment at Ecto-sp6_S_contig10:668070..671138- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.482.1 ID=mRNA_Ecto-sp6_S_contig10.482.1|Name=mRNA_Ecto-sp6_S_contig10.482.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3069bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:668070..671138- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:668070..671138- >mRNA_Ecto-sp6_S_contig10.482.1 ID=mRNA_Ecto-sp6_S_contig10.482.1|Name=mRNA_Ecto-sp6_S_contig10.482.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1617bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:668070..671138- (Ectocarpus species6 EcLAC_371)back to top |