mRNA_Ecto-sp6_S_contig10.465.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.465.1
Unique NamemRNA_Ecto-sp6_S_contig10.465.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: D7G8Z2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z2_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 3.190e-124
Identity = 193/199 (96.98%), Postives = 194/199 (97.49%), Query Frame = 1 
Query:  721 MARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEKQSSGERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDMWQLCGADPGRRFTWDMANNDNLVFGGGFQPRARYDRMFV 1317
            MARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGG RYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRA+FNGKPMLLMTSHLESEKQSS ERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDMWQLCGADP RRFTWDMANNDNLVFGGGFQPRARYDR  V
Sbjct:    1 MARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGGRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRATFNGKPMLLMTSHLESEKQSSEERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDMWQLCGADPERRFTWDMANNDNLVFGGGFQPRARYDRYRV 199
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: A0A7S4LFJ9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LFJ9_9EUGL)

HSP 1 Score: 176 bits (446), Expect = 3.510e-45
Identity = 114/263 (43.35%), Postives = 141/263 (53.61%), Query Frame = 1 
Query:  646 SVAPHSPKTCR-VVSWNIDCLNGENKMARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGT--VTVEESGRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEKQSSGERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDMWQLCGADPGRRFTWDMANNDNLVFGGGFQPRARYDRMFVNGQAKGYARSFALLGTERMAPPHSCFPSDHFGLDTC 1425
            S AP  P+    V SWN D L+G     R  EVC+ILLE  P  DV+ LQEV  +   V   RL       +    VP  + YFTL FV+ G   V V  + R  F  S MGRDL        G  + LMTSH ES ++ + ER+ Q   V+++L   +  PAIFAGDTNLREAE + EK      D W  CG D   +FTWD+  N N       QPRARYDR++VN   K   + F LLGT++MA    C PSDHFG+  C
Sbjct:   62 SAAPDGPRVALCVASWNTDGLDGHLCADRAGEVCSILLEETPAWDVVFLQEVVPKTARVFVGRLKASGY--SCVTEVPSAE-YFTLMFVREGAQAVKVVHAKRVPFGRSAMGRDLIEAWVDVAGHQIRLMTSHFESCREGAEERQRQLGVVVEKLQ--QPLPAIFAGDTNLREAEAQAEKRLARMTDAWVACGRDKSAQFTWDLQKNHNKEMPCQSQPRARYDRLWVN--EKFEVQDFRLLGTDKMA--EGCHPSDHFGISAC 315
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: B7QJH1_IXOSC (Endo/exonuclease/phosphatase domain-containing protein n=4 Tax=Ixodes TaxID=6944 RepID=B7QJH1_IXOSC)

HSP 1 Score: 159 bits (402), Expect = 9.730e-40
Identity = 103/267 (38.58%), Postives = 139/267 (52.06%), Query Frame = 1 
Query:  643 GSVAPHSPKTCRVVSWNIDCLNGENKMARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEKQSSGERKAQFNQVMKQLLAFRGG-PAIFAGDTNLREAEVKQEKLAKEAG-DMWQLCGADPGRRFTWDMANNDNLVFGGG-FQPRARYDRMFVN-GQAKGYA-RSFALLGTERMAPPHSCFPSDHFGLDTCF 1428
            G   P SP   ++VSWNID LN +   AR   +C  L   EP  DV+ LQEV   +  V+   L    RYR  P     ++ YF +T +   +V         F  + M R +  V A+FNG P++LM +HLES   SS  R  Q  +  ++ +        IF GD NLR++EV       +   D+W+ CG+ P  R TWDM+ NDNL FGG   +P+ R+DR++V   Q  G    SF L G ER+ P   CFPSDH+GL  CF
Sbjct:   24 GCAHPGSPTALKLVSWNIDGLNDKEIQARTLSICNALNGLEP--DVVFLQEVVPSIVGVVKKHLS---RYRYIPGD---DKGYFAVTLINKNSVKYISHSVVPFTSTQMDRHIVCVEATFNGFPLVLMNTHLESMAYSSQVRSIQLRKCFRKCMKEPSDRTVIFGGDLNLRDSEVASVGGVPDGMFDVWEACGSSPATRHTWDMSVNDNLDFGGEQAKPKCRFDRVYVRPSQPPGLVPASFLLTGKERLRPG-GCFPSDHWGLVCCF 281
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: A0A4D9D3T3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3T3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.010e-37
Identity = 115/306 (37.58%), Postives = 143/306 (46.73%), Query Frame = 1 
Query:  679 VVSWNIDCLNGENKMARVEEVCAILLES---EPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFN--------------------GKP-------MLLMTSHLES--EKQSSGERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDMWQLCGADPGRRFTWDMANNDNLVFG-GGFQPRARYDRMFVNGQ------------------------AKGYARSFALLGTERMAPPHSCFPSDHFGLDTC 1425
            V S+N+D L+    + R  EVC+ILLE     P PDVILLQEV +    V  +RL     Y   PP       YFTL F K   + +  + R  FP S MGRDL  V+   N                    G P       +L MT+HLES  +  SS +R  Q   V++ LLAF G P +FAGDTNLRE EV+ E   K   D W   G+      TWDMA NDN      GF+PR R DR+ +NG+                         +G  + + LLG ERMA     FPSDHFG+  C
Sbjct:   41 VCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAG-YEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSPASQNPPSDSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLLAFPG-PGLFAGDTNLREKEVRAEGRYKLVVDAWVADGSPKTASATWDMAVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGAQRGKDGEGRVKGWRLLGRERMA--EGVFPSDHFGISCC 342
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: B7Q1G6_IXOSC (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=7 Tax=Ixodes TaxID=6944 RepID=B7Q1G6_IXOSC)

HSP 1 Score: 155 bits (393), Expect = 1.750e-37
Identity = 92/260 (35.38%), Postives = 143/260 (55.00%), Query Frame = 1 
Query:  664 PKTCRVVSWNIDCLNGENKMARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEKQSSGERKAQFNQVMKQLLAFRGGPA-IFAGDTNLREAEVKQ-EKLAKEAGDMWQLCGADPGRRFTWDMANNDNLVFGGGFQPRARYDRMFVNGQAKGYARS--FALLGTERMAPPHSCFPSDHFGLDTCFE 1431
            P T + ++WNID ++ +N + R + VC+I+  S    DV+ LQEV      V+   L G   Y+     V     YFT T ++   V  E      F ++ MGR+++ V+ASFN  P+ L+ +HLES  + +  RK Q  + +++ +      + IFAGD NLR++E+     L     D+W+ CG     R+TWDM  NDN+ + G F+PR R+DR++         +   F L+G ER+ P H CFPSDH+G+ +CF+
Sbjct:  131 PGTLKFITWNIDGIDDKNLLLRTKAVCSIIESSGI--DVVFLQEVVPTSVKVMEQSLPG---YKLL---VGNTVEYFTATLLRKSRVKYESHEVYPFSNTAMGRNVTYVKASFNKWPLTLLNTHLESTAEFAEPRKVQLRRCLRKCIKEPAERSVIFAGDLNLRDSELDDLGGLPHGFEDVWESCGQRKEARYTWDMTRNDNVTWNGRFKPRCRFDRVYFKHSKPTSLKPVFFGLIGLERLKP-HRCFPSDHWGIMSCFK 381
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: UPI0001CB975E (tyrosyl-DNA phosphodiesterase 2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB975E)

HSP 1 Score: 153 bits (386), Expect = 6.890e-37
Identity = 94/251 (37.45%), Postives = 140/251 (55.78%), Query Frame = 1 
Query:  676 RVVSWNIDCLNGENKMARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEKQSSGERKAQFNQVMKQLLAFRGGPA-IFAGDTNLREAEVKQ-EKLAKEAGDMWQLCGADPGRRFTWDMANNDNLVFGGGFQPRARYDRMFVNG--QAKGYARSFALLGTERMAPPHSCFPSDHFGL 1416
            ++++WNID L+ +N   R + VC+I+     +PDV+ LQEV  E FA +         Y A P      ++YFT   ++   +++      +FP + M R+L TV+A F    +LLMTSH+ES K  S ERK Q   V+K +       A IF GDTNLR+ E+ Q   L    GD+WQ+CG+    +F+WD+  NDNL     F+P+ R+DR+F+     +K   + F  +GTER+  P   F SDH+G+
Sbjct:  104 KLLTWNIDGLDNKNITERTKTVCSII--KRESPDVVYLQEVIVETFAYIETMCSP--TYIAIPAN---SEQYFTTILLRKSRISLLAHKIIEFPTTKMYRNLLTVKARFRDIDLLLMTSHMESMKNHSHERKTQLTTVLKHMSEADAATAVIFGGDTNLRDYEITQIGGLPDSIGDVWQMCGSPEDAQFSWDITKNDNLDMP--FKPKCRFDRLFLRQGCSSKLLPQMFMFVGTERL--PCGRFASDHWGI 343
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: A0A1X7VUW5_AMPQE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VUW5_AMPQE)

HSP 1 Score: 150 bits (379), Expect = 1.100e-36
Identity = 98/260 (37.69%), Postives = 141/260 (54.23%), Query Frame = 1 
Query:  676 RVVSWNIDCLNGENKMARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEES--GRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEKQSSGERKAQFNQV---MKQLLAFRGGPAIFAGDTNLREAEVKQEK-LAKEAGDMWQLCGADPGRRFTWDMANNDNLVFGGGFQPRARYDRMFVNGQAKGYAR--SFALLGTERMAPPHSCFPSDHFGLDTCFE 1431
            +V+SWNID L+G + +AR + VC+++LE +P   +I LQEV  +    L ++LG    Y        V Q +  +   KV    V +   G  DFP S MGR L  +     G PM L TSHLES K  SGERK Q +Q    +K+         IF GD NLR+ EVK    L  +  DMW+ CG+    ++TWD+  NDN+ +    +PR R+DR+++      + +  SF L+G ER+ P    FPSDH+G+ + F+
Sbjct:   21 KVLSWNIDGLDGRDTIARADAVCSVILEKKP--HIIFLQEVVPQTLKRLQSKLGS--YYTIHISHKLVFQYFPAILVTKVSRKIVPDGDVGMFDFPGSTMGRHLLQLFVRVCGVPMALYTSHLESMKDFSGERKDQLSQCFEFVKEQNELFSRTCIFGGDLNLRDEEVKSMGGLLPKMVDMWEACGSSEEDKYTWDIQANDNIDWKYANKPRCRFDRLYLCPADGPFVKALSFELVGKERL-PQIGRFPSDHWGMWSVFQ 275
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: A0A293MGF4_ORNER (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=2 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MGF4_ORNER)

HSP 1 Score: 152 bits (383), Expect = 1.970e-36
Identity = 95/262 (36.26%), Postives = 139/262 (53.05%), Query Frame = 1 
Query:  652 APHSPK--TCRVVSWNIDCLNGENKMARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEKQSSGERKAQFNQVMKQLLAF-RGGPAIFAGDTNLREAEVKQEKLAKEAG--DMWQLCGADPGRRFTWDMANNDNLVFGGGFQPRARYDRMFVNGQAKGYARS--FALLGTERMAPPHSCFPSDHFGL 1416
            A H+PK  + + +SWNID ++  N + R + V + +   E   D++ LQEV      +L   L   +     P     EQ YFT   ++  TV+        F ++ MGR ++ + ASF+G P+ LM +HLES  + +  RK Q  +  K  +        IFAGD NLR+ EV QE     AG  DMW+ CG      +TWD+  NDNL++ G F+PR R+DR ++        +   F L+G ER+ P H+CFPSDH+GL
Sbjct:   51 AHHAPKQGSLKFISWNIDGIDERNLLLRTKAVVSYVERHEA--DIVFLQEVVPTSSKMLAKLLPQYKMVLGSPE----EQGYFTAVLLRKDTVSYNSDTVFRFSNTSMGRTVTHIDASFSGHPLTLMNTHLESTAEFADARKVQLKKCFKTCIKEPENKTVIFAGDLNLRDTEV-QELGGVPAGIEDMWEACGRRKEATYTWDLTRNDNLIWNGRFKPRCRFDRAYLRRSKPPRIQPAFFGLIGLERLKP-HTCFPSDHWGL 304
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: W7TBL8_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBL8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.440e-36
Identity = 113/306 (36.93%), Postives = 142/306 (46.41%), Query Frame = 1 
Query:  679 VVSWNIDCLNGENKMARVEEVCAILLES---EPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFN--------------------GKP-------MLLMTSHLES--EKQSSGERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDMWQLCGADPGRRFTWDMANNDNLVFG-GGFQPRARYDRMFVNGQ------------------------AKGYARSFALLGTERMAPPHSCFPSDHFGLDTC 1425
            V S+N+D L+    + R  EVC+ILLE     P PDVILLQEV +    V  +RL     Y   PP       YFTL F K   + +  + R  FP S MGRDL  V+   N                    G P       +L MT+HLES  +  SS +R  Q   V++ L+AF G P +FAGDTNLRE EV+ E   K   D W   G+      TWDM  NDN      GF+PR R DR+ +NG+                         +G  + + LLG ERMA     FPSDHFG+  C
Sbjct:  158 VCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAG-YEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPG-PGLFAGDTNLREKEVRAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMA--EGVFPSDHFGISCC 459
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Match: UPI000C6EB6A2 (tyrosyl-DNA phosphodiesterase 2-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EB6A2)

HSP 1 Score: 149 bits (375), Expect = 1.780e-35
Identity = 86/262 (32.82%), Postives = 137/262 (52.29%), Query Frame = 1 
Query:  670 TCRVVSWNIDCLNGENKMARVEEVCAILLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEKQSSGERKAQFNQVMKQLLAFRGGPA-IFAGDTNLREAEVKQEKLAKEAGDMWQLCGADPGRRFTWDMANNDNLVFGGG--FQPRARYDRMFVNGQAKGYARS--FALLGTERMAPPHSCFPSDHFGLDTCFEW*K 1440
            T + ++WN D L+ +N++ R+  +C I+   +   D++ LQEV  +    +   L     Y+  P        YFT+T +K  TV+  +    ++P++ MGR+L  V       P+ L  +HLES  ++S ER  Q      ++L      A I AGD NLR+ E+    +     DMW +CG+     +TWDM  NDNL F  G  ++PR R+DR+++   +        F L+G ER+ P H CFPSDH+G+ + F++ K
Sbjct:   94 TLKFITWNSDGLDEKNQLLRIRRICKIIKCEDA--DIVFLQEVIPKTLDEIVKHLP---EYKCIPGN---NVEYFTVTLLKKNTVSYIDHDIHEYPNTRMGRNLLQVDVKIGKIPITLFNTHLESTGEASQERMQQLRTAFDKMLEVSSEKAVILAGDLNLRDKEMPPHSIPTAIEDMWVICGSRKECAYTWDMTRNDNLTFNSGSRYKPRFRFDRVYIRQSSPSTVEPEYFGLIGLERLLP-HRCFPSDHWGILSKFQYQK 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Z2_ECTSI3.190e-12496.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4LFJ9_9EUGL3.510e-4543.35Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
B7QJH1_IXOSC9.730e-4038.58Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A4D9D3T3_9STRA1.010e-3737.58Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
B7Q1G6_IXOSC1.750e-3735.38Endo/exonuclease/phosphatase domain-containing pro... [more]
UPI0001CB975E6.890e-3737.45tyrosyl-DNA phosphodiesterase 2-like n=1 Tax=Sacco... [more]
A0A1X7VUW5_AMPQE1.100e-3637.69Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A293MGF4_ORNER1.970e-3636.26Endo/exonuclease/phosphatase domain-containing pro... [more]
W7TBL8_9STRA6.440e-3636.93Endonuclease/exonuclease/phosphatase n=1 Tax=Nanno... [more]
UPI000C6EB6A21.780e-3532.82tyrosyl-DNA phosphodiesterase 2-like n=1 Tax=Centr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:436642..447229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score388.7
Seed ortholog evalue4.1e-105
Seed eggNOG ortholog2880.D7G8Z2
Preferred nameTDP2
Model size3385
KEGG koko:K19619
Hectar predicted targeting categorysignal peptide
GOsGO:0000287,GO:0002009,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003712,GO:0003714,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0008081,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010648,GO:0016234,GO:0016235,GO:0016604,GO:0016605,GO:0016787,GO:0016788,GO:0017015,GO:0019219,GO:0019222,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030145,GO:0030154,GO:0030182,GO:0030512,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0036317,GO:0042578,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060026,GO:0060027,GO:0060255,GO:0060429,GO:0065007,GO:0070013,GO:0070259,GO:0070260,GO:0071704,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1903844,GO:1903845,GO:2001141
Exons8
EggNOG free text desc.5'-tyrosyl-DNA phosphodiesterase activity
EggNOG OGsKOG2756@1,KOG2756@2759
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-15_002530.1
Cds size1437
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.465.1prot_Ecto-sp6_S_contig10.465.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 436642..445281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348699.403423-CDS-Ecto-sp6_S_contig10:436641..4371691682348699.403423-CDS-Ecto-sp6_S_contig10:436641..437169Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 436642..437169 +
1682348699.4146328-CDS-Ecto-sp6_S_contig10:439942..4400951682348699.4146328-CDS-Ecto-sp6_S_contig10:439942..440095Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 439943..440095 +
1682348699.4230835-CDS-Ecto-sp6_S_contig10:441253..4413641682348699.4230835-CDS-Ecto-sp6_S_contig10:441253..441364Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 441254..441364 +
1682348699.4321213-CDS-Ecto-sp6_S_contig10:442183..4423391682348699.4321213-CDS-Ecto-sp6_S_contig10:442183..442339Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 442184..442339 +
1682348699.4413784-CDS-Ecto-sp6_S_contig10:443043..4431811682348699.4413784-CDS-Ecto-sp6_S_contig10:443043..443181Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 443044..443181 +
1682348699.4503198-CDS-Ecto-sp6_S_contig10:443586..4436881682348699.4503198-CDS-Ecto-sp6_S_contig10:443586..443688Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 443587..443688 +
1682348699.4586318-CDS-Ecto-sp6_S_contig10:444197..4443161682348699.4586318-CDS-Ecto-sp6_S_contig10:444197..444316Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 444198..444316 +
1682348699.4677756-CDS-Ecto-sp6_S_contig10:445151..4452811682348699.4677756-CDS-Ecto-sp6_S_contig10:445151..445281Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 445152..445281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348699.4769928-UTR-Ecto-sp6_S_contig10:445281..4472291682348699.4769928-UTR-Ecto-sp6_S_contig10:445281..447229Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 445282..447229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.465.1

>prot_Ecto-sp6_S_contig10.465.1 ID=prot_Ecto-sp6_S_contig10.465.1|Name=mRNA_Ecto-sp6_S_contig10.465.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=479bp
MRLLRGRLPCCLSLSLSWQTGGGPYLDQSQSKTATRCLAAFATINMSTSK
AVNTSSSSSSSGSSRREKAAQAAEQRLQASKSAWTTSPAAASINRGKGAG
EPVSPAAGERSRKRKAPSASVQQICFSDSDDGSESGVALVGVVAGPSSSA
HRDNTAAAAAGATLAAGKNKREKKEPKATGTSGAAAGADGAFGVAGAAGR
RAEASSAAGSSSSGGSVAPHSPKTCRVVSWNIDCLNGENKMARVEEVCAI
LLESEPTPDVILLQEVDDEMFAVLNARLGGGRRYRAFPPRVPVEQRYFTL
TFVKVGTVTVEESGRKDFPHSLMGRDLSTVRASFNGKPMLLMTSHLESEK
QSSGERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDM
WQLCGADPGRRFTWDMANNDNLVFGGGFQPRARYDRMFVNGQAKGYARSF
ALLGTERMAPPHSCFPSDHFGLDTCFEW*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:436642..447229+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.465.1 ID=mRNA_Ecto-sp6_S_contig10.465.1|Name=mRNA_Ecto-sp6_S_contig10.465.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10588bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:436642..447229+ (Ectocarpus species6 EcLAC_371)
ATGCGCTTGCTGAGAGGACGACTTCCGTGTTGTCTCTCCCTATCGTTATC
GTGGCAAACGGGTGGTGGGCCATATCTTGACCAAAGCCAGAGTAAGACAG
CAACTCGGTGCTTGGCAGCCTTTGCGACGATTAATATGAGCACCTCCAAG
GCTGTAAACACTAGCAGCAGCAGCAGCAGCAGCGGCTCTTCGAGACGAGA
GAAAGCAGCGCAGGCTGCAGAGCAACGGCTACAGGCATCAAAATCAGCGT
GGACTACATCTCCCGCTGCTGCAAGCATTAACCGCGGCAAAGGAGCAGGA
GAGCCAGTTAGTCCCGCCGCCGGCGAGAGGAGTCGTAAGCGGAAGGCTCC
TTCTGCCTCTGTTCAACAGATCTGTTTCTCTGACAGCGATGACGGCTCCG
AGTCGGGCGTGGCATTGGTTGGAGTTGTTGCTGGGCCTTCCTCATCCGCC
CACAGGGATAACACCGCCGCTGCCGCTGCTGGTGCTACGTTGGCAGCAGG
GAAGAACAAGCGTGAGAAGAAGGAACCGGTGAGCGGGACGAATAATGTGT
GATGGTGATACATGTAGATGCGTCGGGGCACATTACAACCGCCTTTGTCT
GGTGTAGGTGCCGGGGGAGTCTATGCCCAACCTGAAGGGATCCGACAAAC
AAATGCTATGTATGCATGTGCATGCATTCACGGTTGCAACAGGGTACAAG
TAGATATTTTGTACAGAGAAGGGGTTCAGCGGTAGACAACATGTGCCGTT
GGCGCCACACTCGTAAGTCGTAAGGAACGCTGCCTGTATTGTGACCAAGG
CTCAAATCAAACTCCGTTGGCATTTGTACGCCGTGGGTGAGCATCCGCCC
AACACACATAGGCTGCACTCAGGAGAGCCATGGGTAAATGTGCTACTGCT
ACAAAACATGTTTTGAACGCAGTGGACATTGGTTTTCAGTCAACCTCTTT
CGTTGTTCAATTTCGCTACTCAACCTTCAAGTTGCCAGGTGCATACTCAG
CCTCATTGTGTGTGGTGGCTTCACGTATTGTACATTTGTACTTGTTAAGG
CGTGGACGAACCCTACTAAACAACATGCGGTCGCCCTCGTAAGGAGGAGG
GGGGGGCACGTGACAACAATCTGTTTCAAAGCCGCGATGATCCCCATGAA
GCTTGTATCGACACTAAATAGGTAAAAGCAGCTGACTTCCTCATGCAAGG
GCAGCCACGGTGTCGAAGGAGGCAAAGTAAACACACCGGGGCACGGGTGA
CCACCTCAAGACTTCAAGAGAGGGCACTGTATAAGCCAGCAGGGGCATTA
AGAACACGGTGACATATGCGTACGACTCGGTCTATTCGGGGCAGGCTATG
TGGTTGAAGGACTAAGTCTTCAACCATCCGTGAGCATGGGGGCACTCGGC
GGAAGAACCGAAGCATTTAGGCCACCTCTCATGGGAGGTCTGCATTTTGT
CTGGAAACCACAGCATCAGGTGGAACTCCGGAAATTTTCACTTCCACCTG
GGGCCGACAAAGAGCAGCTCCGATATTTGACATTGTTCCTTATACATGTG
CAACTTGCAAGTATATTTGAAACAGACATGTGGTTGAGCACTATTCACGG
GTAAGATACGTCTCACCTGTGCAGACATACATATTTCAGTCAACCTACGT
CTGCGGAGGAGCCGATATCCGTAGGCAATCAGCGTTGTCACATTCTCTAG
CAAGCAGCTCCCTTCAACATCCAAAAGCGTCACATCTCATCGATATCACA
TCCATGGCATCCTTAGCAAGCTCCATAATAAGCATTTCAGGTTCAGCGCT
CACAGCAGTGGGTGACAATAGGCAAGGGATATGACTCAAAATCGTTGCTT
CTGAGGGCGGCATCGAGTAAACGCCTGGGGTTTGGTTCGGGGCAACCGCC
GAGGACCCCTCCAGCAGGCTGGATCGGGAGACATACTAGTCTGTCTGATT
CCCGATCATGTCAGCCTACGCCCTCCGGAAACTCGCGACCATGCGAAGTA
TCTATCATTGTATTTCGAGAACCGGTGGGGACGACCGGCCGTAACATATT
TTATGGTACATACGAGAAAGGAAGAAAAACATTGGGTTAAACTAAACAGG
ACCACCAACTGACGATTGGGTCCTTTCGAACCGATATCAACAGCGGCTAC
GCCGTAGGATGGGAGGGATGCACACACACCTGCTCTTCGTTGATTGCACA
GCACCACATCATCATCAGCACGCAACAAGCAAAGGCAACGGACAGTTGTG
TACTGCAATGAGAGCATGCAGCACCAGCACCAGCACCAGCAGCGATAAAT
GAGAGCATGCAGCACCAGCAGCGATACCAGATCTATCTACTGCTGCGTCC
TGTTTTTCCTTTGAGAAAGGAAGGGTAACATGTGTCCCGTTTGCCTCTCT
GCGCCAACTGCTCTCCACGCAATCCTGGCTCGTGGACATTTTGTCGATTG
GTGGATGGCGTATTAAGATCAGCAGAGAGTCGACACACATGTCCAACATC
TGATCTGTATACATATGGCCTGGTGCGGTGCATTGTGCGAACAAACGTGC
ATTGGTGCCGCGCGCGCGCAACAACGCCTGCACAACGGCATCAAACCCAA
ATCCCAGCCGAAAAATCTGGCTGGGATTTGGGCCTCCAAATCGCAGCGGG
TGAGGCGATTCCGGAGTGTATCTGGGATTTGAAATCCCATTTTTTCGGCA
AATAACAACACCATGAGGAGTGGTATATCCTGTCGGCCTCACTCAAGAAA
CTAAATCTCAGGAACTGCAGACCTTTCGTAAGAGTTGGTCTGAGTGGTTC
ATTGATACAATGCCCGTTGAATGCAACGCCGGGTATTGGGTATGGTGCCA
GTGAAATCGCGTGACGTATGCATAGATACAATATTCAAGTTGTCTCGTGC
TCTGAATAATGCTGAGTGCCCGGTATAAAATGCCAGGCAAATCGGCGTGA
CACGTGCCGGCATTCTATCGGGACCTCTCCTGCTGTACCAAGGGGTCGGA
TTGGTAGTGCTTGCCACTTCACCCATCAGAACTACGAGAGGTTTCCAGTT
CTCTGTGTGTACATACATAGGCTACTCTATTTCCGGGCTCAACATTTTCA
GCGCTCACCGTTGACGAGGAAAATAATGGCCAAATCCTTCTCGCGATAAA
AAAAGCACTGCAGAGGGAAGGTGAAATCAGTCAAACGAACACTGCTCCTG
TGTGGTCCCTCTTTAAAAACAGAAATATGAACACTCGACGTCCAGAATGA
AAAGGGGATGACAAGCCTACGCAGCCCATTTTGTGACGTCCCCATTTCCA
GAAAGCAACGGGCACCTCTGGTGCTGCTGCCGGTGCTGATGGGGCTTTCG
GTGTTGCTGGAGCCGCCGGGCGCAGGGCTGAAGCAAGCTCGGCAGCAGGG
AGCAGCAGCAGCGGCGGCAGCGTCGCACCTCACTCCCCCAAGACGTGTCG
CGTGGTGAGCATTTTTACCGTCGTAGCTGCCGAAACGTTTTTCGTTTAGA
TGGACGTGTTTGGCGCCAGTGACGAATAAATGATGGCGTTATCCGCCGGT
ATTGCTTCTTGAGTTCGATCTTGGTTCCGTTGTGCTTGTTGTGGAGCGCG
GATAATTGTGCAGTACGGCGTTGCCGATGTGTGAGCCTAAGAGACAGAAA
ATTCGTGTACATCGAAGATCGAAAAGGAACAGCTCGCTTCAAGGAGCAGG
AAATCGATGGTACAAGAGGGATAGGTAGCAGATTAGAAGGGAGAGAGAGA
GAGAGAGAGATGAGCATCACCAGCAAAGAAAGATGTAGAGAGCCTTCATA
TCTTCCACGCGCTGAGAGTTCGAATGCAGCACAGCACGGACTGGTGAAAC
ACCAATTGATGCCTCTCTCAGCCTTTAGAAAGGCATGTACCAAAGAAGGC
GTGAGGCCCTCGGGTGAGTGGTATGTGGGTGGGTGAGGTAGAGCCTTTGG
AATGGCACGTAGCAAAGAAGACAAGAGGCGCTTTGGGTGCGTGGTATGTG
GGGGGTGTGAGGTAGACCCGCCCAGGAAAGGTGAGATCGCGCGCTACAAG
CCTATTCATTGCCACACGCAAACGTTTTGACCACCCCTCGGCAGTGCACT
TCACCTAAATGGTGGTCGGAAAAGGAACAGCAGTCTCGTCATCGTACACC
CTTCTTTTTTTCCGACCTGGGTGTGTGTCTCCTGTTATTTATTTGTCGCT
CGTTCTCGTTCCTTGTGGCCCTCTTCTTGTGCCTGGTTTTGGGAACAAGA
GCTTCACTTTCTTGTCGACGAGGTACCGCACCAACTGATTGTGTACGCGA
AATTAGCAGCTACGAGTACGTCGTGTAGGCCGGATTGCGATTCCTGGCAT
CAGGTCTGGACACTCTGACAGCGGCCACGGGCTCACCCTTTGTAAAATCG
CTGTGCGAAGGAGAAAATGGTTGCGACTCCCTCTGTTTTTCCTGACAGCC
TTGAAACTGTTCGGGCTGCGCGTATGCCCAGGAGCGCATACTTGTCCGCC
CCTCGGAACAGGAAAAATCCTGCCTGCTCCGCTTGCTCGTGAACTACAAC
GTACATGATGTGTGTCAAAAGGCCCACGAGTACCGTGTGTGTATCATCCG
TGCATCGTGCAGGTTTCATGGAATATTGACTGCCTGAACGGCGAGAACAA
GATGGCCAGGGTGGAAGAGGTGTGCGCGATCTTGCTGGAATCGGAGCCGA
CACCCGACGTCATCCTTCTACAGGCGAGTTAGTGCTCCTAGCTAGTGGGG
AGCGGAAGGTGCCGCGGAGGTTGGGGGCGGTATCGTGCGCCAGGAGTTTG
CCCCGAGGTGGCTGTGCGCCCACTGTTCGTCACAGCGTTTGTTTGCACAG
GGGATCATTTTTTGTTTTTTGTTTAACTCGGTCCTGTAGGGGGGTTTCGA
AGGCACCTGTACTCATGGTGGAGCAAGGTTTACTTCCTAACGGTTGCTTT
CCAATCTTGGCATCTGGGTATTCGATTTTTTTTCCTGAAGGGAGCGTCGA
GGAGGAGGTGCTGGTTATGTAGAGCTCATGCACGTTTTTGTTTTCGAAAA
CGAGAAGGATTACGATTCCTTCGCGACACCAATGGTGAACATCGATGCGG
CAGGTGCAGCAGTTTGTTAGAAGTATGTCGTGTGTTTTGTCGTTTGTGTA
AGTCTCGTCGTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCGATTGAAGAAAACGCCTACACGTGTGGCAGTGGTAGAAGTGGTATGGT
ATGGTGCCATGTGTCCCAGCCAGTGTGCCGGTACCGTTTATAGATTTGGA
TGCTCTCTTCCACATTGGTCGCTAGACAGCTGCTTCCCCTACCTCTCTCC
CCGTCCCGTCTTCTTGCAGGGCTCCCTCTTGTACTTTTGGCTTCGTATTG
ACTCTTCTGCCCGCTCTATCGGCCTGTGCGTGCCCCGCCCCCCCGTCTGC
TCTGTTTCTGTCTCTGTCTCCCCCCTTTTTCTTCGGCAAACGCCTGCTTG
GCGTTTTCTTCCCCGGACACACTACAACGGCCCTCTAACCAGGAGGTGGA
TGACGAGATGTTTGCTGTGCTTAACGCGCGGCTAGGGGGGGGGAGACGAT
ACCGCGCCTTCCCCCCTAGGGTCCCCGTAGAGCAGAGGTACTTCACGCTA
ACGTTCGTCAAGGTGGGCACTGTCACGGTGGAGGAAAGCGGGAGGAAGGT
GAGAGGGGAAACAACAACCGCATCGTTTCTCTTCCTTGATCGTGAAAGAA
AAGGGCAGTTTCTGGTCTAAACACTGCGCGCGTTTGTTCGATGCGGGCTG
GTGGAATACGTGCGTGTCGTGGGCGCTCTGCTGGTAGAGTGGTCACCGAG
ACCCCCAGCATGCTTTGAATGCCTGCAGCAGGTAGGTGACACAGGAAACC
ACGCCCCCTGGACCGATTTTCAAAGCTCGATTAGTCCACTATGAAGATGA
TGCGTAGAAAAGAAGGATACGTCTTTCGAAAGCTCTCGATGAGACGGCCC
CAACACCGCCGTTTTCGGCACCGTCCCTCTTTCAGCGGTGAAAATATCGA
ATGTCCGGATCCAAGCGAGGGGAAGATCAAGGTTTTTTTTTGGTTTCGTA
TCCCAGCGCTCTAATACGAAGCAGATCGCAAGTCCTCGTCCATTAGCCAA
CCAGAGGCTTGGGGACGGCGAGCCCTTCACGCAACACGAGGTGAAGACGA
AGACCACAGCAGGCAGGGTGGAAGTCCTTACGAGGAATCATTGTCTGCGG
AGAGGAGCTCGTCCGAAGCTACTGCGAGCGGCCAGAAAACTACTGCCATG
CACGATTATGATGATGAAGTAAACATTGTTGGTTGGGCGTTTGAGTGATG
TTTTCTTTCGATTTCATCTGCCGTCCCTTTTCGTTCCGAAATTTTGTGGA
AGGATTTCCCGCACTCGCTCATGGGGAGAGACCTGTCAACGGTTCGGGCT
TCCTTCAACGGAAAGCCGATGCTCCTCATGACCTCCCACTTGGAGAGCGA
AAAGCAAAGCTCCGGAGAAAGGAAGGCGCAATTTAACCAGGTGCTTGTGT
GCGTGTGTGCGGGGGCGGGGGCGGGGTCAGCAACAGCTGTAGTAGGGTTG
GGAGAGGAGAAGTGTCCACGAGAGTGCACCCTTGAGACTGCGCTCTGTGA
GCATGCGTGGTAAGCAAAACACGGAATTGGTTACATACACGGGTGAAACT
AAGAGCTGGCAATGAATGGTGTTCGGCACCGGCTATGTCTTTTTTTGTGT
GTGCGTGTGTGTGCGCGAAACAGGTGCTTATGCAGTTGCTCGAATGGTGG
TCGGCACCTTCGTGTGTCTTTGTTATTAGCATCGACCGCGCAAACGGGCT
GACCGATGAAAAGACGTCAGTCTCAGTGCGGTTGAAAACGCGTAACACTT
CTAAATGCCATTAAACTGGTGTGTGCGTGTGCGTGCGTGAAACAGGTGAT
GAAGCAGTTGCTCGCCTTCCGCGGGGGGCCCGCCATCTTCGCCGGAGACA
CCAACCTCCGGGAGGCTGAGGTCAAGCAGGAAAAGCTCGCCAAAGAGGTG
ATAGTGGCGATGGGCGGTGGAAGAAGATGGCAACATGCGCCTGTTTGTGT
ATTTCTGGCATGAACTGTAAGCAAGCCATGTGGCTACAAGGCGGGCACCC
GTTCGCTGGTGGTAGACTCACGGGCGTGATTTATTTTTGGCACGAATTCG
AGCGCACCCCGTGAGCTAGACTCCAGGCATTTGGGAGCGAGCCGCGGACA
CATCCATCGATGTGTTTTTTTTTCGACACTGAGCTGCCAAGACAAGGCAG
GTATTCAAACAAAGGGACTTGGTGGAACGGTGATGTTTGGAAGGACGGCG
AGGTGCTTTCCTTGTATGCGCCGCGCCGCACCCCCCCCCACGCCGCCTTG
CTTCGGCTGGTGGTGCGTTTTCCATGCAGGGCAAGACGCTGCTGCTGGTG
CGAGTCGTGCCCACGTACGTAGCACCTGGTGCTTGCTTGTTTGCATCGCC
ACGCGGTATCTTGCCTGACCCCCCCCGTCTGTCTGCCCTGAAAAATAATT
GGGAAGGCTGGAGACATGTGGCAACTTTGCGGTGCGGATCCTGGGCGTCG
CTTCACTTGGGACATGGCCAACAACGACAACCTCGTCTTCGGCGGGGGGT
TCCAGCCTAGGGCCAGATACGACAGGTACCGCGTGCAACAGGTTATGCAC
AGGCTCCCGAGGTCTTGAGAGTAGCGTTAAGGTTACAACAGGGCCAACGG
TTATTATTGGGACCTACCATCTTTGTTGTGACTTGACATAATGGTATTCA
AGCAGGTATTTGCATAATCGTTCGCTTCATGTTTGCATATCCCCCACCCC
TCGGGATATGCTAACTAACAGCAACGCTTTGGTGCTCGCCGAACGGGCTC
CGGCTGAGAGAGAGGCGGATCGTTACAATGTACATGTCTTTGAGCTTCTG
TGCTGTCAATAGAATGTACCCGTTTATGAGATCGGCCGTGTAGAAAGGTT
TTGGACTGGCGCGATTCCGCGAGATGATGCGTCTGCCCGTGACTGGATTC
CCATGACCGAGCAGGGGCGCAGATTCCCAAGGGGCGACAGCTCAGTGTAG
AGTAACCTCTGTGGGTGAGGTGCTTCACAGACTGCCAAGGTTTTTGTTAT
CAAATTGTTCGCAATGACGTTTCCAAGCTCCTGTTTTGTGAATGTTCGTA
ACAATCGTTGATGGGGGGAGTGACACTTGGCCTCGCCTTAGACTTTGTAT
TGGATATTCCACCACGAATGAAGAACACCACGGACCGTGTAGGCCACTCC
CATCTCGCCCTGCGAATGAGGTGACCGATCGCTCTGTATGCGCGCGGGTG
TGTACCCTCGTGAACTCTTCAGCCGGTGATCGGTCCTGTGCGTGTGGAAC
AATGCTCCGTCCTCTCGAGGACGCGTGGGCAATGGTCTAACCGCTAAGGC
ATGCAAAGCATGAGAGTACACCCTCCCTCCCTTGCGGATCACCTTTTGGC
CTCAAAACAGGATGTTTGTCAACGGTCAGGCGAAGGGGTACGCCAGGTCT
TTCGCCCTCCTCGGGACCGAAAGGATGGCCCCGCCACACTCTTGCTTCCC
TTCGGACCACTTCGGCTTGGACACTTGCTTCGAGTGGTGAAAGAAACACC
ATCGACCGGAGGAAAAAGAAACATCATCGTGGGCTCTTCGACTCTTTTAA
TCTCTGGATGGAGTGGTGTCTCCGAACAGAAACGAAATCTCGGACTATTG
TCTACGATAGAGATGAGATTGGTTGTGTTTTTTTTAGAAAAATCAACACA
TCTCGTCTCACCTCGTACGAGTCGGTCTCGTCTATTTTTAGTACGAAAAT
CGTGTGTGCGTTGTTGGCTGCAGCGTGGTGTGTAACGAGGCACAAGGTAA
GGAGGATATCAGGGCTACTCCTGTTGCGAATGGTCGAAACCAGCGAGCCC
TGTTTTTCGAGCTCACACCTCTCCGGGAACAGACTGAGTAAAAACTTGGA
GTTGTGTGGGTGCGCCCCCTGCTGATTTTCGATGTAACGTGAAGGTTGTA
TTTTCGTTGGAGTTGTGAACGAAGGAAGCTGTTTCGCTGTTTGCGAGGAT
GGGAGTGGCTCGCCCCCATCACATGGATTGGCTGGAAAAGCCATCCGGGT
TTGTCTGGAACATCAGTCTATTGTTTTTTTAAGTTAAAAAGTGCAACGGC
GCTGTTGACCTGCAGCACGGAGCTTTATTCGTTATATAGAGTGTGGTGTA
ACGATGCTGTTGACCTGAAGCATGGAGTTGGCCGGATGTGGCACAAGGTG
ACGCATTGTGCGAGCGGTGCGGGCGAATTGCCTGGTTCTGGTGGTAGAAA
AAAAGGACGAAATCACCGGTATCGAAGTCGGTTCGACTAGAGTGGTGAGG
GGGCCACTTGTCGAAGACTTACCCCATGTATGCATACAAACAAAAGTTTT
CGGAGTGGCAACACGAGATATCGCCGTTTTCAAGTGAACAAACGCGCCTG
CTTTGAATATGGAAAGGTAGCTGCCCACCAGTAGCGTCACTCACAACACT
TTGTTTGGAGTGTTTTCGTTCACGCTACGTATGCCACCCACATCACAAAC
AAGACCGCAAAGCAGCGAGCCGCCTCGGCGGTCTGAGACACGTTGGTTTA
GCGTATCCATCTCAAGTAGACTTACCCCGGCCTATCCAGCTCCCCCTATG
AGTATACCAATGGTACCGAATTTCAATCTCTCTCTGTCAGCCCCACCCTC
CTCGTCTCCAACGTTGCTCGCCACAATTAAACGCCTCCCAAAATATGGGG
CTCAAACTAGGCGCACACATCGTTCTGCTAGCGATACCGTCAAATCATTT
TTCATCTCACGGTAGCACACAAAACAAAACCAGGTTGTGCCCTCTTAGCA
AGGCACCAATCGATACCTCCGCAGCAGCTGCCGAGCAGCGACACCGTCGC
GCATCCACGAGCATCTGTGGCCAACCTCCCACAGAAAAACAAATTTGGCG
AACTTCACACCGGCGACGCTCACTTGTACACAAAGTGCAAAAACACTACA
GCCCTCCTTCGGCGCTTGCTAAGGAATCACCAAGAAACTGCCCACTGCAC
ACGGAGTAAAGAGCCGAACCAGTTCGGTATCTACTTCGCACATTTGATGT
CAACATCGGAACAGAAATAGGTCACCCCTTTTCCTTCTTTCCCCAAACAC
TACAAGACCCAAATAGAAACAGCAGTAGTAGCCGCGCACCATGACTTCCC
GAACGATGTTGTCGTCCTGTGCCGCGAGGATAACGAGGGATACGGGAAAT
GTCGCCGCCCAAGCGAGCGACACCTCTTACCCGACTCCGCAGCACCAACA
AACAACACCGCACACACACAAAAAACTCAAATCTGATAGAAAAACCATGA
AGCCGAAACATCATGATTTTTTTTGCCGCAAACCTCCAGCGTGCTGCGCT
CAATGCTGGATGCCAGTATCCCCGACAAACCTGCGCTTTTCCTTCGTGGG
AATGGACAACCGGTCTGCCCGTGCGCAGAAATCGGGCGTCGCCATGAGCA
CTTCACTCAAAAAACATCGCTCAACTCTCGACACTGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:436642..447229+

>mRNA_Ecto-sp6_S_contig10.465.1 ID=mRNA_Ecto-sp6_S_contig10.465.1|Name=mRNA_Ecto-sp6_S_contig10.465.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1437bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:436642..447229+ (Ectocarpus species6 EcLAC_371)
ATGCGCTTGCTGAGAGGACGACTTCCGTGTTGTCTCTCCCTATCGTTATC
GTGGCAAACGGGTGGTGGGCCATATCTTGACCAAAGCCAGAGTAAGACAG
CAACTCGGTGCTTGGCAGCCTTTGCGACGATTAATATGAGCACCTCCAAG
GCTGTAAACACTAGCAGCAGCAGCAGCAGCAGCGGCTCTTCGAGACGAGA
GAAAGCAGCGCAGGCTGCAGAGCAACGGCTACAGGCATCAAAATCAGCGT
GGACTACATCTCCCGCTGCTGCAAGCATTAACCGCGGCAAAGGAGCAGGA
GAGCCAGTTAGTCCCGCCGCCGGCGAGAGGAGTCGTAAGCGGAAGGCTCC
TTCTGCCTCTGTTCAACAGATCTGTTTCTCTGACAGCGATGACGGCTCCG
AGTCGGGCGTGGCATTGGTTGGAGTTGTTGCTGGGCCTTCCTCATCCGCC
CACAGGGATAACACCGCCGCTGCCGCTGCTGGTGCTACGTTGGCAGCAGG
GAAGAACAAGCGTGAGAAGAAGGAACCGAAAGCAACGGGCACCTCTGGTG
CTGCTGCCGGTGCTGATGGGGCTTTCGGTGTTGCTGGAGCCGCCGGGCGC
AGGGCTGAAGCAAGCTCGGCAGCAGGGAGCAGCAGCAGCGGCGGCAGCGT
CGCACCTCACTCCCCCAAGACGTGTCGCGTGGTTTCATGGAATATTGACT
GCCTGAACGGCGAGAACAAGATGGCCAGGGTGGAAGAGGTGTGCGCGATC
TTGCTGGAATCGGAGCCGACACCCGACGTCATCCTTCTACAGGAGGTGGA
TGACGAGATGTTTGCTGTGCTTAACGCGCGGCTAGGGGGGGGGAGACGAT
ACCGCGCCTTCCCCCCTAGGGTCCCCGTAGAGCAGAGGTACTTCACGCTA
ACGTTCGTCAAGGTGGGCACTGTCACGGTGGAGGAAAGCGGGAGGAAGGA
TTTCCCGCACTCGCTCATGGGGAGAGACCTGTCAACGGTTCGGGCTTCCT
TCAACGGAAAGCCGATGCTCCTCATGACCTCCCACTTGGAGAGCGAAAAG
CAAAGCTCCGGAGAAAGGAAGGCGCAATTTAACCAGGTGATGAAGCAGTT
GCTCGCCTTCCGCGGGGGGCCCGCCATCTTCGCCGGAGACACCAACCTCC
GGGAGGCTGAGGTCAAGCAGGAAAAGCTCGCCAAAGAGGCTGGAGACATG
TGGCAACTTTGCGGTGCGGATCCTGGGCGTCGCTTCACTTGGGACATGGC
CAACAACGACAACCTCGTCTTCGGCGGGGGGTTCCAGCCTAGGGCCAGAT
ACGACAGGATGTTTGTCAACGGTCAGGCGAAGGGGTACGCCAGGTCTTTC
GCCCTCCTCGGGACCGAAAGGATGGCCCCGCCACACTCTTGCTTCCCTTC
GGACCACTTCGGCTTGGACACTTGCTTCGAGTGGTGA
back to top